HEADER OXIDOREDUCTASE 22-JAN-12 4DF2 TITLE P. STIPITIS OYE2.6 COMPLEXED WITH P-CHLOROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHEFFERSOMYCES STIPITIS CBS 6054; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 322104; SOURCE 5 STRAIN: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545; SOURCE 6 GENE: OYE2.6, PICST_44614; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TIM BARREL, OXIDOREDUCTASE, FMN, NAD(P)H, CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 3 13-SEP-23 4DF2 1 REMARK LINK REVDAT 2 29-APR-15 4DF2 1 HETSYN REVDAT 1 11-JUL-12 4DF2 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,A.WALTON,J.D.STEWART JRNL TITL STRUCTURAL AND CATALYTIC CHARACTERIZATION OF PICHIA STIPITIS JRNL TITL 2 OYE 2.6, A USEFUL BIOCATALYST FOR ASYMMETRIC ALKENE JRNL TITL 3 REDUCTIONS JRNL REF ADV.SYNTH.CATAL. 2012 JRNL REFN ESSN 1615-4169 JRNL DOI 10.1002/ADSC.201200213 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 38149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8622 - 6.0349 0.87 1280 143 0.1728 0.1968 REMARK 3 2 6.0349 - 4.8013 0.92 1265 140 0.1425 0.1547 REMARK 3 3 4.8013 - 4.1977 0.92 1269 141 0.1192 0.1509 REMARK 3 4 4.1977 - 3.8154 0.93 1238 137 0.1268 0.1637 REMARK 3 5 3.8154 - 3.5428 0.95 1256 140 0.1469 0.1654 REMARK 3 6 3.5428 - 3.3344 0.95 1270 140 0.1621 0.1865 REMARK 3 7 3.3344 - 3.1678 0.96 1258 140 0.1692 0.2147 REMARK 3 8 3.1678 - 3.0301 0.96 1283 142 0.1744 0.2255 REMARK 3 9 3.0301 - 2.9137 0.97 1257 141 0.1771 0.2046 REMARK 3 10 2.9137 - 2.8133 0.97 1279 142 0.1659 0.2017 REMARK 3 11 2.8133 - 2.7254 0.97 1266 140 0.1780 0.2126 REMARK 3 12 2.7254 - 2.6476 0.98 1290 144 0.1648 0.2412 REMARK 3 13 2.6476 - 2.5780 0.98 1275 141 0.1632 0.2043 REMARK 3 14 2.5780 - 2.5151 0.98 1273 142 0.1633 0.2075 REMARK 3 15 2.5151 - 2.4580 0.98 1277 142 0.1662 0.2146 REMARK 3 16 2.4580 - 2.4057 0.98 1269 141 0.1574 0.2248 REMARK 3 17 2.4057 - 2.3576 0.98 1297 144 0.1588 0.2138 REMARK 3 18 2.3576 - 2.3132 0.99 1262 141 0.1563 0.2053 REMARK 3 19 2.3132 - 2.2719 0.99 1281 142 0.1677 0.2151 REMARK 3 20 2.2719 - 2.2334 0.99 1294 143 0.1609 0.2181 REMARK 3 21 2.2334 - 2.1974 0.99 1262 141 0.1670 0.2137 REMARK 3 22 2.1974 - 2.1636 0.99 1283 143 0.1772 0.2259 REMARK 3 23 2.1636 - 2.1318 0.99 1268 141 0.1834 0.2375 REMARK 3 24 2.1318 - 2.1018 0.99 1279 142 0.1961 0.2509 REMARK 3 25 2.1018 - 2.0734 0.99 1258 139 0.2229 0.2981 REMARK 3 26 2.0734 - 2.0465 0.99 1276 143 0.2345 0.2785 REMARK 3 27 2.0465 - 2.0209 0.99 1269 140 0.2423 0.2687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 38.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01120 REMARK 3 B22 (A**2) : 1.01120 REMARK 3 B33 (A**2) : -2.02240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3357 REMARK 3 ANGLE : 1.049 4578 REMARK 3 CHIRALITY : 0.079 504 REMARK 3 PLANARITY : 0.004 593 REMARK 3 DIHEDRAL : 13.573 1231 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : GRAPHITE CRYSTAL REMARK 200 OPTICS : MONOCHROMATIC CUKA REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M MALONATE, 1% IPROH PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.82300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.82300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.82300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.82300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.82300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.82300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 247.29200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 723 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 406 REMARK 465 LEU A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 169 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 153.54 -44.36 REMARK 500 ILE A 85 50.78 -144.96 REMARK 500 GLU A 168 -70.70 -120.14 REMARK 500 ALA A 252 -121.98 53.43 REMARK 500 SER A 346 -68.08 -90.96 REMARK 500 ASN A 354 33.00 -96.65 REMARK 500 TYR A 381 -88.70 -111.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 26 OE1 REMARK 620 2 HOH A 696 O 99.2 REMARK 620 3 HOH A 787 O 83.3 108.9 REMARK 620 4 HOH A 863 O 110.5 90.5 154.4 REMARK 620 5 HOH A 864 O 168.1 90.4 87.0 76.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 335 O REMARK 620 2 HOH A 823 O 117.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4CH A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TJL RELATED DB: PDB REMARK 900 SAME ENZYME BOUND TO MALONATE REMARK 900 RELATED ID: 3UPW RELATED DB: PDB REMARK 900 SAME ENZYME BOUND TO NICOTINAMIDE REMARK 900 RELATED ID: 1OYA RELATED DB: PDB DBREF 4DF2 A 1 407 UNP A3LT82 A3LT82_PICST 1 407 SEQRES 1 A 407 MET SER SER VAL LYS ILE SER PRO LEU LYS ASP SER GLU SEQRES 2 A 407 ALA PHE GLN SER ILE LYS VAL GLY ASN ASN THR LEU GLN SEQRES 3 A 407 THR LYS ILE VAL TYR PRO PRO THR THR ARG PHE ARG ALA SEQRES 4 A 407 LEU GLU ASP HIS THR PRO SER ASP LEU GLN LEU GLN TYR SEQRES 5 A 407 TYR GLY ASP ARG SER THR PHE PRO GLY THR LEU LEU ILE SEQRES 6 A 407 THR GLU ALA THR PHE VAL SER PRO GLN ALA SER GLY TYR SEQRES 7 A 407 GLU GLY ALA ALA PRO GLY ILE TRP THR ASP LYS HIS ALA SEQRES 8 A 407 LYS ALA TRP LYS VAL ILE THR ASP LYS VAL HIS ALA ASN SEQRES 9 A 407 GLY SER PHE VAL SER THR GLN LEU ILE PHE LEU GLY ARG SEQRES 10 A 407 VAL ALA ASP PRO ALA VAL MET LYS THR ARG GLY LEU ASN SEQRES 11 A 407 PRO VAL SER ALA SER ALA THR TYR GLU SER ASP ALA ALA SEQRES 12 A 407 LYS GLU ALA ALA GLU ALA VAL GLY ASN PRO VAL ARG ALA SEQRES 13 A 407 LEU THR THR GLN GLU VAL LYS ASP LEU VAL TYR GLU THR SEQRES 14 A 407 TYR THR ASN ALA ALA GLN LYS ALA MET ASP ALA GLY PHE SEQRES 15 A 407 ASP TYR ILE GLU LEU HIS ALA ALA HIS GLY TYR LEU LEU SEQRES 16 A 407 ASP GLN PHE LEU GLN PRO CYS THR ASN GLN ARG THR ASP SEQRES 17 A 407 GLU TYR GLY GLY SER ILE GLU ASN ARG ALA ARG LEU ILE SEQRES 18 A 407 LEU GLU LEU ILE ASP HIS LEU SER THR ILE VAL GLY ALA SEQRES 19 A 407 ASP LYS ILE GLY ILE ARG ILE SER PRO TRP ALA THR PHE SEQRES 20 A 407 GLN ASN MET LYS ALA HIS LYS ASP THR VAL HIS PRO LEU SEQRES 21 A 407 THR THR PHE SER TYR LEU VAL HIS GLU LEU GLN GLN ARG SEQRES 22 A 407 ALA ASP LYS GLY GLN GLY ILE ALA TYR ILE SER VAL VAL SEQRES 23 A 407 GLU PRO ARG VAL SER GLY ASN VAL ASP VAL SER GLU GLU SEQRES 24 A 407 ASP GLN ALA GLY ASP ASN GLU PHE VAL SER LYS ILE TRP SEQRES 25 A 407 LYS GLY VAL ILE LEU LYS ALA GLY ASN TYR SER TYR ASP SEQRES 26 A 407 ALA PRO GLU PHE LYS THR LEU LYS GLU ASP ILE ALA ASP SEQRES 27 A 407 LYS ARG THR LEU VAL GLY PHE SER ARG TYR PHE THR SER SEQRES 28 A 407 ASN PRO ASN LEU VAL TRP LYS LEU ARG ASP GLY ILE ASP SEQRES 29 A 407 LEU VAL PRO TYR ASP ARG ASN THR PHE TYR SER ASP ASN SEQRES 30 A 407 ASN TYR GLY TYR ASN THR PHE SER MET ASP SER GLU GLU SEQRES 31 A 407 VAL ASP LYS GLU LEU GLU ILE LYS ARG VAL PRO SER ALA SEQRES 32 A 407 ILE GLU ALA LEU HET FMN A 501 31 HET MLA A 502 7 HET MLA A 503 7 HET NA A 504 1 HET NA A 505 1 HET 4CH A 506 8 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM NA SODIUM ION HETNAM 4CH 4-CHLOROPHENOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MLA 2(C3 H4 O4) FORMUL 5 NA 2(NA 1+) FORMUL 7 4CH C6 H5 CL O FORMUL 8 HOH *396(H2 O) HELIX 1 1 SER A 12 GLN A 16 5 5 HELIX 2 2 SER A 46 ARG A 56 1 11 HELIX 3 3 SER A 72 SER A 76 5 5 HELIX 4 4 THR A 87 ASN A 104 1 18 HELIX 5 5 LEU A 115 ALA A 119 5 5 HELIX 6 6 ASP A 120 ARG A 127 1 8 HELIX 7 7 SER A 140 VAL A 150 1 11 HELIX 8 8 THR A 158 GLU A 168 1 11 HELIX 9 9 GLU A 168 ALA A 180 1 13 HELIX 10 10 TYR A 193 GLN A 200 1 8 HELIX 11 11 SER A 213 GLY A 233 1 21 HELIX 12 12 THR A 246 MET A 250 5 5 HELIX 13 13 LYS A 251 ASP A 255 5 5 HELIX 14 14 HIS A 258 LYS A 276 1 19 HELIX 15 15 SER A 297 GLN A 301 5 5 HELIX 16 16 ASN A 305 TRP A 312 1 8 HELIX 17 17 ASN A 321 ALA A 326 5 6 HELIX 18 18 PHE A 329 ALA A 337 1 9 HELIX 19 19 SER A 346 ASN A 352 1 7 HELIX 20 20 ASN A 354 GLY A 362 1 9 HELIX 21 21 ASP A 369 PHE A 373 5 5 HELIX 22 22 TYR A 381 MET A 386 5 6 HELIX 23 23 ASP A 387 VAL A 391 5 5 HELIX 24 24 ASP A 392 ARG A 399 1 8 SHEET 1 A 2 ILE A 18 VAL A 20 0 SHEET 2 A 2 ASN A 23 LEU A 25 -1 O ASN A 23 N VAL A 20 SHEET 1 B 9 ILE A 29 TYR A 31 0 SHEET 2 B 9 LEU A 63 PHE A 70 1 O ILE A 65 N TYR A 31 SHEET 3 B 9 PHE A 107 ILE A 113 1 O SER A 109 N THR A 66 SHEET 4 B 9 TYR A 184 HIS A 188 1 O GLU A 186 N THR A 110 SHEET 5 B 9 ILE A 237 ILE A 241 1 O ARG A 240 N LEU A 187 SHEET 6 B 9 TYR A 282 VAL A 286 1 O SER A 284 N ILE A 239 SHEET 7 B 9 VAL A 315 ALA A 319 1 O LEU A 317 N VAL A 285 SHEET 8 B 9 THR A 341 GLY A 344 1 O LEU A 342 N ILE A 316 SHEET 9 B 9 ILE A 29 TYR A 31 1 N VAL A 30 O VAL A 343 SHEET 1 C 2 VAL A 132 SER A 133 0 SHEET 2 C 2 ARG A 155 ALA A 156 1 O ARG A 155 N SER A 133 SHEET 1 D 2 VAL A 290 SER A 291 0 SHEET 2 D 2 VAL A 294 ASP A 295 -1 O VAL A 294 N SER A 291 LINK OE1 GLN A 26 NA NA A 505 1555 1555 2.41 LINK O ASP A 335 NA NA A 504 1555 1555 2.51 LINK NA NA A 504 O HOH A 823 1555 1555 2.34 LINK NA NA A 505 O HOH A 696 1555 1555 2.32 LINK NA NA A 505 O HOH A 787 1555 1555 2.40 LINK NA NA A 505 O HOH A 863 1555 1555 2.42 LINK NA NA A 505 O HOH A 864 1555 1555 2.44 CISPEP 1 ALA A 326 PRO A 327 0 5.85 SITE 1 AC1 22 PRO A 33 THR A 34 THR A 35 ALA A 68 SITE 2 AC1 22 GLN A 111 HIS A 188 HIS A 191 ARG A 240 SITE 3 AC1 22 GLY A 292 GLY A 320 ASN A 321 PHE A 345 SITE 4 AC1 22 SER A 346 ARG A 347 PHE A 373 TYR A 374 SITE 5 AC1 22 MLA A 503 4CH A 506 HOH A 671 HOH A 694 SITE 6 AC1 22 HOH A 701 HOH A 703 SITE 1 AC2 7 HIS A 43 SER A 76 ARG A 127 HOH A 698 SITE 2 AC2 7 HOH A 791 HOH A 915 HOH A 944 SITE 1 AC3 7 ILE A 113 HIS A 188 HIS A 191 TYR A 193 SITE 2 AC3 7 GLY A 292 FMN A 501 HOH A 987 SITE 1 AC4 4 ASP A 335 ASP A 338 THR A 341 HOH A 823 SITE 1 AC5 6 GLN A 26 ASN A 104 HOH A 696 HOH A 787 SITE 2 AC5 6 HOH A 863 HOH A 864 SITE 1 AC6 8 THR A 35 TYR A 78 HIS A 188 HIS A 191 SITE 2 AC6 8 TYR A 193 TYR A 374 FMN A 501 HOH A 987 CRYST1 127.736 127.736 123.646 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007829 0.004520 0.000000 0.00000 SCALE2 0.000000 0.009040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008088 0.00000