HEADER TRANSFERASE/ANTIBOTIC/INHIBITOR 24-JAN-12 4DFU TITLE INHIBITION OF AN ANTIBIOTIC RESISTANCE ENZYME: CRYSTAL STRUCTURE OF TITLE 2 AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(2")-ID/APH(2")-IVA IN COMPLEX TITLE 3 WITH KANAMYCIN INHIBITED WITH QUERCETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2")-ID; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APH(2")-IVA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: APH(2")-ID; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, EUKARYOTIC PROTEIN KINASE-LIKE FOLD, TRANSFERASE- KEYWDS 3 ANTIBIOTIC-INHIBITOR COMPLEX, AMINOGLYCOSIDE PHOSPHOTRANSFERASE, KEYWDS 4 KINASE, TRANSFERASE, AMINOGLYCOSIDES, KANAMYCIN, FLAVANOIDS, KEYWDS 5 QUERCETIN, INTRACELLULAR, ANTIBOTIC, TRANSFERASE-ANTIBOTIC-INHIBITOR KEYWDS 6 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,G.MINASOV,A.DONG,E.EVDOKIMOVA,E.EGOROVA,R.DI LEO,H.LI, AUTHOR 2 T.SHAKYA,G.D.WRIGHT,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 20-NOV-24 4DFU 1 REMARK REVDAT 5 13-MAR-24 4DFU 1 SOURCE REVDAT 4 06-DEC-23 4DFU 1 REMARK REVDAT 3 13-SEP-23 4DFU 1 REMARK SEQADV LINK REVDAT 2 22-FEB-12 4DFU 1 AUTHOR REVDAT 1 08-FEB-12 4DFU 0 SPRSDE 08-FEB-12 4DFU 3VCQ JRNL AUTH T.SHAKYA,P.J.STOGIOS,N.WAGLECHNER,E.EVDOKIMOVA,L.EJIM, JRNL AUTH 2 J.E.BLANCHARD,A.G.MCARTHUR,A.SAVCHENKO,G.D.WRIGHT JRNL TITL A SMALL MOLECULE DISCRIMINATION MAP OF THE ANTIBIOTIC JRNL TITL 2 RESISTANCE KINOME. JRNL REF CHEM.BIOL. V. 18 1591 2011 JRNL REFN ISSN 1074-5521 JRNL PMID 22195561 JRNL DOI 10.1016/J.CHEMBIOL.2011.10.018 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 81608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8380 - 4.2531 0.98 7701 395 0.1807 0.2304 REMARK 3 2 4.2531 - 3.3813 0.99 7794 387 0.1848 0.2116 REMARK 3 3 3.3813 - 2.9554 0.99 7845 391 0.2274 0.2949 REMARK 3 4 2.9554 - 2.6859 1.00 7769 387 0.2531 0.3232 REMARK 3 5 2.6859 - 2.4938 1.00 7900 395 0.2464 0.3011 REMARK 3 6 2.4938 - 2.3470 0.99 7793 394 0.2560 0.3463 REMARK 3 7 2.3470 - 2.2297 0.99 7794 390 0.2679 0.3553 REMARK 3 8 2.2297 - 2.1327 0.98 7730 377 0.2838 0.3408 REMARK 3 9 2.1327 - 2.0507 0.98 7691 385 0.3054 0.3191 REMARK 3 10 2.0507 - 1.9800 0.97 7712 378 0.3344 0.3437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 80.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.37800 REMARK 3 B22 (A**2) : -32.43490 REMARK 3 B33 (A**2) : -20.44900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.37070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5233 REMARK 3 ANGLE : 1.247 7086 REMARK 3 CHIRALITY : 0.069 752 REMARK 3 PLANARITY : 0.008 898 REMARK 3 DIHEDRAL : 14.608 2007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 3:99 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6546 22.6515 -22.5487 REMARK 3 T TENSOR REMARK 3 T11: 0.2472 T22: 0.3189 REMARK 3 T33: 0.2879 T12: 0.0008 REMARK 3 T13: -0.0161 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.5493 L22: 2.6086 REMARK 3 L33: 1.7970 L12: 0.0604 REMARK 3 L13: 0.5448 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: -0.0669 S13: 0.0411 REMARK 3 S21: 0.0863 S22: -0.0145 S23: 0.0442 REMARK 3 S31: -0.1574 S32: 0.0159 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 3:99 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8118 -10.2929 -15.5213 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 0.5184 REMARK 3 T33: 0.4407 T12: -0.0333 REMARK 3 T13: 0.0340 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.3319 L22: 2.4699 REMARK 3 L33: 1.6813 L12: -0.4503 REMARK 3 L13: 0.4721 L23: 0.0230 REMARK 3 S TENSOR REMARK 3 S11: 0.1195 S12: 0.2138 S13: 0.0131 REMARK 3 S21: -0.0815 S22: -0.0964 S23: 0.1641 REMARK 3 S31: 0.2854 S32: -0.0864 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 100:298 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1352 7.8556 -38.2194 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.6580 REMARK 3 T33: 0.6021 T12: 0.0240 REMARK 3 T13: 0.0140 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.0418 L22: 3.5547 REMARK 3 L33: 1.0671 L12: 1.5041 REMARK 3 L13: 0.3940 L23: 1.1736 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.1434 S13: -0.0528 REMARK 3 S21: -0.2377 S22: 0.0418 S23: -0.3204 REMARK 3 S31: 0.0754 S32: 0.1542 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 100:299 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6394 2.5634 2.7746 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.5507 REMARK 3 T33: 0.5300 T12: -0.0543 REMARK 3 T13: 0.0137 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6304 L22: 2.4807 REMARK 3 L33: 0.5415 L12: -0.6590 REMARK 3 L13: 0.0696 L23: -0.6200 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: -0.0384 S13: 0.0444 REMARK 3 S21: 0.2254 S22: -0.0402 S23: -0.2719 REMARK 3 S31: -0.0932 S32: 0.0557 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 37.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59200 REMARK 200 FOR SHELL : 2.704 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DBX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M HEPES PH 7.5, 29% REMARK 280 PEG3350, 1 MM KANAMYCIN, 5 MM QUERCITIN, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.90700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 98 O27 QUE A 402 2.07 REMARK 500 OD1 ASN A 62 NH1 ARG A 66 2.15 REMARK 500 N ILE A 98 O13 QUE A 402 2.16 REMARK 500 O HOH B 522 O HOH B 586 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 18.09 51.41 REMARK 500 ASN A 141 -19.12 71.53 REMARK 500 ASP A 197 45.11 -145.23 REMARK 500 ASP A 217 75.17 58.00 REMARK 500 SER A 224 -149.95 -164.96 REMARK 500 GLU A 239 -155.84 -123.72 REMARK 500 ASP A 256 70.72 -165.81 REMARK 500 ARG B 41 25.08 49.61 REMARK 500 ASN B 196 -1.53 76.69 REMARK 500 ASP B 217 76.54 59.47 REMARK 500 SER B 224 -148.16 -157.75 REMARK 500 GLU B 239 -152.01 -120.81 REMARK 500 GLU B 281 -70.61 -53.90 REMARK 500 TYR B 282 20.59 -74.79 REMARK 500 TYR B 284 87.18 -65.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DBX RELATED DB: PDB REMARK 900 RELATED ID: 4DE4 RELATED DB: PDB REMARK 900 RELATED ID: 4DFB RELATED DB: PDB REMARK 900 RELATED ID: IDP91189 RELATED DB: TARGETTRACK DBREF 4DFU A 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 4DFU B 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 4DFU MSE A -20 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY A -19 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER A -18 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER A -17 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -16 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -15 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -14 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -13 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -12 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS A -11 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER A -10 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER A -9 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY A -8 UNP O68183 EXPRESSION TAG SEQADV 4DFU ARG A -7 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLU A -6 UNP O68183 EXPRESSION TAG SEQADV 4DFU ASN A -5 UNP O68183 EXPRESSION TAG SEQADV 4DFU LEU A -4 UNP O68183 EXPRESSION TAG SEQADV 4DFU TYR A -3 UNP O68183 EXPRESSION TAG SEQADV 4DFU PHE A -2 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLN A -1 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY A 0 UNP O68183 EXPRESSION TAG SEQADV 4DFU MSE B -20 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY B -19 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER B -18 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER B -17 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -16 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -15 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -14 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -13 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -12 UNP O68183 EXPRESSION TAG SEQADV 4DFU HIS B -11 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER B -10 UNP O68183 EXPRESSION TAG SEQADV 4DFU SER B -9 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY B -8 UNP O68183 EXPRESSION TAG SEQADV 4DFU ARG B -7 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLU B -6 UNP O68183 EXPRESSION TAG SEQADV 4DFU ASN B -5 UNP O68183 EXPRESSION TAG SEQADV 4DFU LEU B -4 UNP O68183 EXPRESSION TAG SEQADV 4DFU TYR B -3 UNP O68183 EXPRESSION TAG SEQADV 4DFU PHE B -2 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLN B -1 UNP O68183 EXPRESSION TAG SEQADV 4DFU GLY B 0 UNP O68183 EXPRESSION TAG SEQRES 1 A 322 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 322 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG THR TYR THR SEQRES 3 A 322 PHE ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO SEQRES 4 A 322 ASP PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY SEQRES 5 A 322 ASN ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE SEQRES 6 A 322 PHE LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU SEQRES 7 A 322 PHE ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS SEQRES 8 A 322 LEU PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MSE SEQRES 9 A 322 PRO SER GLU THR TYR GLN MSE SER PHE ALA GLY PHE THR SEQRES 10 A 322 LYS ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN SEQRES 11 A 322 ASN LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP SEQRES 12 A 322 LEU ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SEQRES 13 A 322 SER GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU SEQRES 14 A 322 LYS ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SEQRES 15 A 322 SER ARG GLU LEU LYS GLY PRO GLN MSE LYS LYS VAL ASP SEQRES 16 A 322 ASP PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE SEQRES 17 A 322 LYS TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER SEQRES 18 A 322 ASP HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS SEQRES 19 A 322 GLY ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO SEQRES 20 A 322 ASP ASN ASP PHE ILE SER LEU MSE GLU ASP ASP GLU GLU SEQRES 21 A 322 TYR GLY MSE GLU PHE VAL SER LYS ILE LEU ASN HIS TYR SEQRES 22 A 322 LYS HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG SEQRES 23 A 322 MSE LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR SEQRES 24 A 322 GLY LYS GLU TYR GLY TYR MSE ASP TRP TYR GLU GLU GLY SEQRES 25 A 322 LEU ASN GLU ILE ARG SER ILE LYS ILE LYS SEQRES 1 B 322 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 322 ARG GLU ASN LEU TYR PHE GLN GLY MSE ARG THR TYR THR SEQRES 3 B 322 PHE ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO SEQRES 4 B 322 ASP PHE THR ILE ASN THR ILE GLU ILE SER GLY GLU GLY SEQRES 5 B 322 ASN ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE SEQRES 6 B 322 PHE LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU SEQRES 7 B 322 PHE ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS SEQRES 8 B 322 LEU PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MSE SEQRES 9 B 322 PRO SER GLU THR TYR GLN MSE SER PHE ALA GLY PHE THR SEQRES 10 B 322 LYS ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN SEQRES 11 B 322 ASN LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP SEQRES 12 B 322 LEU ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SEQRES 13 B 322 SER GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU SEQRES 14 B 322 LYS ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SEQRES 15 B 322 SER ARG GLU LEU LYS GLY PRO GLN MSE LYS LYS VAL ASP SEQRES 16 B 322 ASP PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE SEQRES 17 B 322 LYS TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER SEQRES 18 B 322 ASP HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS SEQRES 19 B 322 GLY ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO SEQRES 20 B 322 ASP ASN ASP PHE ILE SER LEU MSE GLU ASP ASP GLU GLU SEQRES 21 B 322 TYR GLY MSE GLU PHE VAL SER LYS ILE LEU ASN HIS TYR SEQRES 22 B 322 LYS HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG SEQRES 23 B 322 MSE LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR SEQRES 24 B 322 GLY LYS GLU TYR GLY TYR MSE ASP TRP TYR GLU GLU GLY SEQRES 25 B 322 LEU ASN GLU ILE ARG SER ILE LYS ILE LYS MODRES 4DFU MSE A 83 MET SELENOMETHIONINE MODRES 4DFU MSE A 90 MET SELENOMETHIONINE MODRES 4DFU MSE A 170 MET SELENOMETHIONINE MODRES 4DFU MSE A 234 MET SELENOMETHIONINE MODRES 4DFU MSE A 242 MET SELENOMETHIONINE MODRES 4DFU MSE A 266 MET SELENOMETHIONINE MODRES 4DFU MSE A 285 MET SELENOMETHIONINE MODRES 4DFU MSE B 83 MET SELENOMETHIONINE MODRES 4DFU MSE B 90 MET SELENOMETHIONINE MODRES 4DFU MSE B 170 MET SELENOMETHIONINE MODRES 4DFU MSE B 234 MET SELENOMETHIONINE MODRES 4DFU MSE B 242 MET SELENOMETHIONINE MODRES 4DFU MSE B 266 MET SELENOMETHIONINE MODRES 4DFU MSE B 285 MET SELENOMETHIONINE HET MSE A 83 16 HET MSE A 90 8 HET MSE A 170 8 HET MSE A 234 8 HET MSE A 242 8 HET MSE A 266 8 HET MSE A 285 16 HET MSE B 83 8 HET MSE B 90 8 HET MSE B 170 8 HET MSE B 234 8 HET MSE B 242 8 HET MSE B 266 8 HET MSE B 285 8 HET KAN A 401 33 HET QUE A 402 22 HET CL A 403 1 HET QUE B 401 44 HET KAN B 402 33 HET QUE B 403 22 HET CL B 404 1 HETNAM MSE SELENOMETHIONINE HETNAM KAN KANAMYCIN A HETNAM QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE HETNAM CL CHLORIDE ION HETSYN QUE QUERCETIN FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 KAN 2(C18 H36 N4 O11) FORMUL 4 QUE 3(C15 H10 O7) FORMUL 5 CL 2(CL 1-) FORMUL 10 HOH *168(H2 O) HELIX 1 1 THR A 5 TYR A 17 1 13 HELIX 2 2 HIS A 50 HIS A 68 1 19 HELIX 3 3 THR A 104 ASN A 110 1 7 HELIX 4 4 PRO A 112 HIS A 131 1 20 HELIX 5 5 ASP A 145 SER A 162 1 18 HELIX 6 6 LYS A 166 GLU A 182 1 17 HELIX 7 7 ASN A 183 PHE A 187 5 5 HELIX 8 8 SER A 199 ASP A 201 5 3 HELIX 9 9 ASP A 227 SER A 232 1 6 HELIX 10 10 GLY A 241 LYS A 253 1 13 HELIX 11 11 ASP A 256 GLY A 283 1 28 HELIX 12 12 TYR A 284 ARG A 296 1 13 HELIX 13 13 THR B 5 TYR B 17 1 13 HELIX 14 14 HIS B 50 ILE B 67 1 18 HELIX 15 15 THR B 104 ASN B 110 1 7 HELIX 16 16 PRO B 112 HIS B 131 1 20 HELIX 17 17 LYS B 139 VAL B 143 5 5 HELIX 18 18 ASP B 145 SER B 162 1 18 HELIX 19 19 LYS B 166 GLU B 182 1 17 HELIX 20 20 ASN B 183 PHE B 187 5 5 HELIX 21 21 SER B 199 ASP B 201 5 3 HELIX 22 22 ASP B 227 SER B 232 1 6 HELIX 23 23 GLY B 241 LYS B 253 1 13 HELIX 24 24 ASP B 256 TYR B 282 1 27 HELIX 25 25 TYR B 284 ILE B 295 1 12 SHEET 1 A 5 ILE A 25 GLU A 30 0 SHEET 2 A 5 CYS A 34 ILE A 39 -1 O ALA A 36 N SER A 28 SHEET 3 A 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 A 5 ALA A 93 THR A 96 -1 O ALA A 93 N LYS A 46 SHEET 5 A 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 B 3 VAL A 101 PRO A 102 0 SHEET 2 B 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 B 3 THR A 211 ILE A 215 -1 O GLY A 214 N LEU A 204 SHEET 1 C 2 CYS A 192 ILE A 194 0 SHEET 2 C 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 SHEET 1 D 5 ILE B 25 GLU B 30 0 SHEET 2 D 5 CYS B 34 ILE B 39 -1 O GLU B 38 N GLU B 26 SHEET 3 D 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 D 5 ALA B 93 THR B 96 -1 O ALA B 93 N LYS B 46 SHEET 5 D 5 VAL B 78 THR B 81 -1 N VAL B 79 O GLY B 94 SHEET 1 E 3 VAL B 101 PRO B 102 0 SHEET 2 E 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 E 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 F 2 CYS B 192 ILE B 194 0 SHEET 2 F 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 LINK C GLY A 82 N AMSE A 83 1555 1555 1.33 LINK C GLY A 82 N BMSE A 83 1555 1555 1.33 LINK C AMSE A 83 N PRO A 84 1555 1555 1.34 LINK C BMSE A 83 N PRO A 84 1555 1555 1.35 LINK C GLN A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N SER A 91 1555 1555 1.34 LINK C GLN A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N LYS A 171 1555 1555 1.33 LINK C LEU A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N GLU A 235 1555 1555 1.33 LINK C GLY A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N GLU A 243 1555 1555 1.33 LINK C ARG A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N LYS A 267 1555 1555 1.33 LINK C TYR A 284 N AMSE A 285 1555 1555 1.33 LINK C TYR A 284 N BMSE A 285 1555 1555 1.33 LINK C AMSE A 285 N ASP A 286 1555 1555 1.33 LINK C BMSE A 285 N ASP A 286 1555 1555 1.33 LINK C GLY B 82 N MSE B 83 1555 1555 1.33 LINK C MSE B 83 N PRO B 84 1555 1555 1.34 LINK C GLN B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N SER B 91 1555 1555 1.33 LINK C GLN B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N LYS B 171 1555 1555 1.33 LINK C LEU B 233 N MSE B 234 1555 1555 1.33 LINK C MSE B 234 N GLU B 235 1555 1555 1.33 LINK C GLY B 241 N MSE B 242 1555 1555 1.33 LINK C MSE B 242 N GLU B 243 1555 1555 1.33 LINK C ARG B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N LYS B 267 1555 1555 1.34 LINK C TYR B 284 N MSE B 285 1555 1555 1.33 LINK C MSE B 285 N ASP B 286 1555 1555 1.33 SITE 1 AC1 12 ASP A 197 SER A 199 ASP A 201 ASP A 220 SITE 2 AC1 12 GLU A 235 GLU A 238 GLU A 239 GLU A 268 SITE 3 AC1 12 TRP A 271 TYR A 278 HOH A 555 HOH A 569 SITE 1 AC2 9 ILE A 44 LYS A 46 PRO A 76 THR A 96 SITE 2 AC2 9 LYS A 97 ILE A 98 GLY A 100 PRO A 102 SITE 3 AC2 9 ASP A 217 SITE 1 AC3 3 TYR A 17 PRO A 18 ASP A 19 SITE 1 AC4 16 ARG A 52 THR A 55 SER A 85 GLU A 86 SITE 2 AC4 16 THR A 87 TYR A 88 GLN A 89 SER B 51 SITE 3 AC4 16 ARG B 52 THR B 55 SER B 85 GLU B 86 SITE 4 AC4 16 THR B 87 TYR B 88 GLN B 89 GLU B 281 SITE 1 AC5 10 ASP B 197 SER B 199 ASP B 220 GLU B 235 SITE 2 AC5 10 GLU B 238 GLU B 239 GLU B 268 TRP B 271 SITE 3 AC5 10 TYR B 278 HOH B 592 SITE 1 AC6 13 ILE B 44 LYS B 46 PRO B 76 PHE B 95 SITE 2 AC6 13 THR B 96 LYS B 97 ILE B 98 GLY B 100 SITE 3 AC6 13 PRO B 102 LEU B 204 ASP B 217 HOH B 567 SITE 4 AC6 13 HOH B 568 SITE 1 AC7 2 LYS B 113 ASN B 117 CRYST1 43.141 101.814 70.249 90.00 96.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023180 0.000000 0.002788 0.00000 SCALE2 0.000000 0.009822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014338 0.00000