HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-JAN-12 4DFX TITLE CRYSTAL STRUCTURE OF MYRISTOYLATED K7C CATALYTIC SUBUNIT OF CAMP- TITLE 2 DEPENDENT PROTEIN KINASE IN COMPLEX WITH SP20 AND AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 2-351; COMPND 5 SYNONYM: PKA C-ALPHA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: UNP RESIDUES 6-25; COMPND 13 SYNONYM: PKI-ALPHA, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 14 MUSCLE/BRAIN ISOFORM; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS PROTEIN KINASE, MYRISTOYLATED, PHOSPHOTRANSFERASE ONTO SER/THR, MG, KEYWDS 2 PKI, PKA REGULATORY SUBUNITS, PHOSPHORYLATED ON S139, T197, S338, KEYWDS 3 MYRISTOYLATED ON G1, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.BASTIDAS,J.M.STEICHEN,S.S.TAYLOR REVDAT 2 02-JAN-13 4DFX 1 JRNL REVDAT 1 06-JUN-12 4DFX 0 JRNL AUTH A.C.BASTIDAS,M.S.DEAL,J.M.STEICHEN,M.M.KESHWANI,Y.GUO, JRNL AUTH 2 S.S.TAYLOR JRNL TITL ROLE OF N-TERMINAL MYRISTYLATION IN THE STRUCTURE AND JRNL TITL 2 REGULATION OF CAMP-DEPENDENT PROTEIN KINASE. JRNL REF J.MOL.BIOL. V. 422 215 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22617327 JRNL DOI 10.1016/J.JMB.2012.05.021 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 90882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3237 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4394 ; 1.335 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;35.524 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;12.252 ;15.053 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2435 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1888 ; 0.902 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3056 ; 1.451 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 2.091 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1325 ; 3.122 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3236 ; 1.124 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 455 ; 3.013 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3148 ; 2.744 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 350 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4570 5.5500 -24.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0238 REMARK 3 T33: 0.0462 T12: -0.0010 REMARK 3 T13: 0.0100 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5944 L22: 1.0858 REMARK 3 L33: 1.5212 L12: 0.1273 REMARK 3 L13: -0.0601 L23: 0.4537 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0351 S13: 0.0033 REMARK 3 S21: 0.0298 S22: -0.0258 S23: 0.0359 REMARK 3 S31: -0.0066 S32: 0.0191 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 5 I 24 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5410 -6.1120 -32.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0506 REMARK 3 T33: 0.0806 T12: 0.0261 REMARK 3 T13: 0.0074 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1823 L22: 4.5115 REMARK 3 L33: 4.7012 L12: -0.7517 REMARK 3 L13: -0.2582 L23: 3.5141 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0077 S13: 0.0690 REMARK 3 S21: -0.0325 S22: 0.1116 S23: -0.2999 REMARK 3 S31: 0.0369 S32: 0.1946 S33: -0.1196 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 402 E 402 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6210 0.2750 -17.3320 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.0636 REMARK 3 T33: 0.0315 T12: 0.0343 REMARK 3 T13: -0.0071 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.5425 L22: 3.0138 REMARK 3 L33: 1.6064 L12: 2.1418 REMARK 3 L13: -0.4699 L23: -0.9898 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.0682 S13: -0.1437 REMARK 3 S21: 0.1705 S22: 0.0766 S23: -0.1413 REMARK 3 S31: 0.1299 S32: 0.1261 S33: -0.0313 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 403 E 403 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7180 1.8730 -21.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0020 REMARK 3 T33: 0.0249 T12: 0.0031 REMARK 3 T13: -0.0016 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0001 REMARK 3 L33: 0.0003 L12: -0.0001 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0006 S13: -0.0025 REMARK 3 S21: 0.0006 S22: -0.0001 S23: 0.0008 REMARK 3 S31: -0.0034 S32: -0.0003 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 404 E 404 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0400 5.2880 -20.3450 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0273 REMARK 3 T33: 0.0384 T12: -0.0073 REMARK 3 T13: 0.0135 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0014 L22: 0.0017 REMARK 3 L33: 0.0003 L12: 0.0012 REMARK 3 L13: 0.0004 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0007 S13: -0.0009 REMARK 3 S21: 0.0020 S22: -0.0024 S23: -0.0025 REMARK 3 S31: 0.0001 S32: -0.0015 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 501 E 865 REMARK 3 RESIDUE RANGE : I 101 I 138 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5700 5.4040 -23.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1227 REMARK 3 T33: 0.1507 T12: 0.0015 REMARK 3 T13: 0.0082 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.6370 L22: 1.0394 REMARK 3 L33: 1.6062 L12: 0.0012 REMARK 3 L13: -0.0932 L23: 0.4798 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0347 S13: 0.0092 REMARK 3 S21: 0.0263 S22: -0.0213 S23: 0.0334 REMARK 3 S31: -0.0090 S32: 0.0211 S33: 0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 25.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOTHER LIQUOR: 12% MPD, 100 MM BIS- REMARK 280 TRIS, PROTEIN SOLUTION: 50 MM BICINE, 150 MM AMMONIUM ACETATE, 10 REMARK 280 MM DTT, 8-10 MG/ML 9% MEOH ADDED TO THE WELL IMMEDIATELY BEFORE REMARK 280 SEALING. 8 UL DROP SIZE WITH 1:1 PROTEIN:MOTHER LIQUOR, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 8 CD CE NZ REMARK 470 GLU E 334 CG CD OE1 OE2 REMARK 470 LYS E 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 669 O HOH I 136 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 144 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG E 144 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 166 47.04 -148.20 REMARK 500 ASP E 184 78.01 66.13 REMARK 500 LEU E 273 47.25 -88.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP E 402 O2A REMARK 620 2 ANP E 402 O2G 143.8 REMARK 620 3 ASN E 171 OD1 99.6 116.6 REMARK 620 4 HOH E 520 O 90.5 88.4 89.9 REMARK 620 5 ASP E 184 OD2 90.0 88.6 94.2 175.7 REMARK 620 6 ANP E 402 N3B 82.0 61.8 178.4 90.1 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP E 402 O3G REMARK 620 2 HOH E 526 O 107.4 REMARK 620 3 ANP E 402 O1B 88.5 91.5 REMARK 620 4 HOH E 522 O 92.8 89.3 178.2 REMARK 620 5 ASP E 184 OD2 93.9 158.7 88.7 90.0 REMARK 620 6 ASP E 184 OD1 153.0 99.4 87.7 90.5 59.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT REMARK 800 PROTEIN KINASE INHIBITOR ALPHA REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ATP RELATED DB: PDB REMARK 900 THE CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH ATP AND IP20. REMARK 900 RELATED ID: 1JBP RELATED DB: PDB REMARK 900 THE CATALYTIC SUBUNIT OF PKA IN COMPLEX WITH ADP AND SP20. REMARK 900 RELATED ID: 1CTP RELATED DB: PDB REMARK 900 MYRISTOYLATED CATALYTIC SUBUNIT OF PKA BOUND TO IP20. REMARK 900 RELATED ID: 4DFZ RELATED DB: PDB REMARK 900 RELATED ID: 4DG0 RELATED DB: PDB REMARK 900 RELATED ID: 4DG2 RELATED DB: PDB DBREF 4DFX E 1 350 UNP P05132 KAPCA_MOUSE 2 351 DBREF 4DFX I 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 4DFX CYS E 7 UNP P05132 LYS 8 ENGINEERED MUTATION SEQADV 4DFX ALA I 20 UNP P63248 ASN 21 ENGINEERED MUTATION SEQADV 4DFX SER I 21 UNP P63248 ALA 22 ENGINEERED MUTATION SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA CYS LYS GLY SER GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 E 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ALA SER ILE HIS ASP MODRES 4DFX SEP E 139 SER PHOSPHOSERINE MODRES 4DFX TPO E 197 THR PHOSPHOTHREONINE MODRES 4DFX SEP E 338 SER PHOSPHOSERINE HET SEP E 139 10 HET TPO E 197 11 HET SEP E 338 10 HET MYR E 401 15 HET ANP E 402 31 HET MG E 403 1 HET MG E 404 1 HET GOL E 405 6 HET GOL E 406 6 HET GOL E 407 6 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MYR MYRISTIC ACID HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MYR C14 H28 O2 FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 MG 2(MG 2+) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *453(H2 O) HELIX 1 1 GLY E 1 CYS E 7 1 7 HELIX 2 2 GLU E 11 THR E 32 1 22 HELIX 3 3 GLN E 39 ASP E 41 5 3 HELIX 4 4 LYS E 76 LEU E 82 1 7 HELIX 5 5 GLN E 84 GLN E 96 1 13 HELIX 6 6 GLU E 127 GLY E 136 1 10 HELIX 7 7 SEP E 139 LEU E 160 1 22 HELIX 8 8 LYS E 168 GLU E 170 5 3 HELIX 9 9 THR E 201 LEU E 205 5 5 HELIX 10 10 ALA E 206 LEU E 211 1 6 HELIX 11 11 LYS E 217 GLY E 234 1 18 HELIX 12 12 GLN E 242 GLY E 253 1 12 HELIX 13 13 SER E 262 LEU E 273 1 12 HELIX 14 14 VAL E 288 ASN E 293 1 6 HELIX 15 15 HIS E 294 ALA E 298 5 5 HELIX 16 16 ASP E 301 GLN E 307 1 7 HELIX 17 17 GLY E 344 THR E 348 5 5 HELIX 18 18 THR I 6 ALA I 12 1 7 SHEET 1 A 5 PHE E 43 THR E 51 0 SHEET 2 A 5 GLY E 55 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 A 5 HIS E 68 ASP E 75 -1 O ILE E 73 N ARG E 56 SHEET 4 A 5 ASN E 115 GLU E 121 -1 O MET E 120 N ALA E 70 SHEET 5 A 5 LEU E 106 LYS E 111 -1 N PHE E 108 O VAL E 119 SHEET 1 B 2 LEU E 162 ILE E 163 0 SHEET 2 B 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 C 2 LEU E 172 ILE E 174 0 SHEET 2 C 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 SHEET 1 D 2 CYS E 199 GLY E 200 0 SHEET 2 D 2 ILE I 22 HIS I 23 -1 O ILE I 22 N GLY E 200 LINK C PHE E 138 N SEP E 139 1555 1555 1.33 LINK C SEP E 139 N GLU E 140 1555 1555 1.33 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK C VAL E 337 N SEP E 338 1555 1555 1.33 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 LINK O2A ANP E 402 MG MG E 403 1555 1555 1.97 LINK O3G ANP E 402 MG MG E 404 1555 1555 1.99 LINK O2G ANP E 402 MG MG E 403 1555 1555 1.99 LINK MG MG E 404 O HOH E 526 1555 1555 2.00 LINK O1B ANP E 402 MG MG E 404 1555 1555 2.03 LINK OD1 ASN E 171 MG MG E 403 1555 1555 2.05 LINK MG MG E 403 O HOH E 520 1555 1555 2.06 LINK MG MG E 404 O HOH E 522 1555 1555 2.08 LINK OD2 ASP E 184 MG MG E 403 1555 1555 2.13 LINK OD2 ASP E 184 MG MG E 404 1555 1555 2.21 LINK OD1 ASP E 184 MG MG E 404 1555 1555 2.23 LINK N3B ANP E 402 MG MG E 403 1555 1555 2.76 LINK N GLY E 1 C1 MYR E 401 1555 1555 1.48 SITE 1 AC1 9 GLY E 1 ASN E 2 ALA E 3 ALA E 4 SITE 2 AC1 9 SER E 14 PHE E 18 LEU E 152 ILE E 303 SITE 3 AC1 9 ASP I 24 SITE 1 AC2 32 GLY E 52 VAL E 57 ALA E 70 LYS E 72 SITE 2 AC2 32 VAL E 104 MET E 120 GLU E 121 TYR E 122 SITE 3 AC2 32 VAL E 123 GLU E 127 ASP E 166 LYS E 168 SITE 4 AC2 32 GLU E 170 ASN E 171 LEU E 173 THR E 183 SITE 5 AC2 32 ASP E 184 PHE E 327 MG E 403 MG E 404 SITE 6 AC2 32 HOH E 520 HOH E 521 HOH E 522 HOH E 523 SITE 7 AC2 32 HOH E 526 HOH E 594 HOH E 717 HOH E 718 SITE 8 AC2 32 HOH E 753 ARG I 18 ALA I 20 SER I 21 SITE 1 AC3 4 ASN E 171 ASP E 184 ANP E 402 HOH E 520 SITE 1 AC4 4 ASP E 184 ANP E 402 HOH E 522 HOH E 526 SITE 1 AC5 4 ASN E 36 ALA E 38 GLN E 39 GLN E 42 SITE 1 AC6 6 ARG E 93 HOH E 703 THR I 5 THR I 6 SITE 2 AC6 6 ASP I 9 HOH I 121 SITE 1 AC7 7 PRO E 237 PHE E 238 PHE E 239 LYS E 249 SITE 2 AC7 7 HOH E 533 HOH E 650 HOH E 891 SITE 1 AC8 72 GLY E 1 ASN E 2 ALA E 3 LEU E 82 SITE 2 AC8 72 GLN E 84 GLU E 86 LEU E 89 ARG E 93 SITE 3 AC8 72 GLU E 127 PHE E 129 ARG E 133 ASP E 166 SITE 4 AC8 72 LYS E 168 PRO E 169 GLU E 170 PHE E 187 SITE 5 AC8 72 LYS E 189 ARG E 190 VAL E 191 LYS E 192 SITE 6 AC8 72 LEU E 198 CYS E 199 GLY E 200 THR E 201 SITE 7 AC8 72 PRO E 202 GLU E 203 GLU E 230 TYR E 235 SITE 8 AC8 72 PRO E 236 PHE E 239 ALA E 240 ASP E 241 SITE 9 AC8 72 ILE E 246 TYR E 330 GLU E 349 MYR E 401 SITE 10 AC8 72 ANP E 402 GOL E 406 HOH E 507 HOH E 543 SITE 11 AC8 72 HOH E 594 HOH E 683 HOH E 701 HOH E 820 SITE 12 AC8 72 HOH E 885 HOH I 101 HOH I 102 HOH I 103 SITE 13 AC8 72 HOH I 104 HOH I 106 HOH I 107 HOH I 109 SITE 14 AC8 72 HOH I 110 HOH I 111 HOH I 113 HOH I 114 SITE 15 AC8 72 HOH I 115 HOH I 117 HOH I 118 HOH I 119 SITE 16 AC8 72 HOH I 120 HOH I 121 HOH I 122 HOH I 125 SITE 17 AC8 72 HOH I 126 HOH I 127 HOH I 128 HOH I 129 SITE 18 AC8 72 HOH I 131 HOH I 133 HOH I 134 HOH I 139 CRYST1 48.100 79.700 117.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008530 0.00000