HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-JAN-12 4DG3 TITLE CRYSTAL STRUCTURE OF R336A MUTANT OF CAMP-DEPENDENT PROTEIN KINASE TITLE 2 WITH UNPHOSPHORYLATED TURN MOTIF. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 10 CHAIN: A; COMPND 11 FRAGMENT: UNP RESIDUES 6-25; COMPND 12 SYNONYM: PKI-ALPHA, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 13 MUSCLE/BRAIN ISOFORM; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 OTHER_DETAILS: SYNTHESIZED KEYWDS PROTEIN KINASE, PHOSPHOTRANSFERASE, SERINE/THREONINE PROTEIN KINASE, KEYWDS 2 REGULATORY SUBUNIT, PKI, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.STEICHEN,J.YANG,S.S.TAYLOR REVDAT 2 06-NOV-24 4DG3 1 REMARK SEQADV LINK REVDAT 1 13-FEB-13 4DG3 0 JRNL AUTH J.M.STEICHEN,J.YANG,S.S.TAYLOR JRNL TITL TURN MOTIF PHOSPHORYLATION REGULATES PROCESSING OF JRNL TITL 2 CAMP-DEPENDENT PROTEIN KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 35158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2994 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4057 ; 1.135 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;34.310 ;23.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;12.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2264 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 14 E 126 REMARK 3 RESIDUE RANGE : E 328 E 350 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0753 15.5905 -5.7273 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.1055 REMARK 3 T33: 0.0553 T12: 0.0584 REMARK 3 T13: -0.0207 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.4659 L22: 1.9968 REMARK 3 L33: 3.8185 L12: -0.5546 REMARK 3 L13: -0.9407 L23: -0.0862 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.0666 S13: 0.1863 REMARK 3 S21: -0.0242 S22: 0.0181 S23: 0.0539 REMARK 3 S31: -0.3102 S32: -0.3279 S33: -0.0303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 127 E 327 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2759 -6.8346 -0.7348 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.0447 REMARK 3 T33: 0.0512 T12: -0.0477 REMARK 3 T13: 0.0214 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.7449 L22: 2.2166 REMARK 3 L33: 3.3028 L12: -0.3248 REMARK 3 L13: 0.1908 L23: -0.7746 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0312 S13: -0.2568 REMARK 3 S21: -0.1065 S22: -0.0134 S23: 0.1440 REMARK 3 S31: 0.5326 S32: -0.2365 S33: 0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-14% MPD, 100 MM TRIS, 10 MM DTT. 11 REMARK 280 -13% METHANOL ADDED TO WELL BEFORE SEALING, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.14500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E -20 REMARK 465 GLY E -19 REMARK 465 SER E -18 REMARK 465 SER E -17 REMARK 465 HIS E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 HIS E -12 REMARK 465 HIS E -11 REMARK 465 SER E -10 REMARK 465 SER E -9 REMARK 465 GLY E -8 REMARK 465 LEU E -7 REMARK 465 VAL E -6 REMARK 465 PRO E -5 REMARK 465 ARG E -4 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 GLY E 1 REMARK 465 ASN E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 LYS E 7 REMARK 465 LYS E 8 REMARK 465 GLY E 9 REMARK 465 SER E 10 REMARK 465 GLU E 11 REMARK 465 GLN E 12 REMARK 465 GLU E 13 REMARK 465 ASP A 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 16 CD CE NZ REMARK 470 GLU E 17 CG CD OE1 OE2 REMARK 470 LYS E 21 CE NZ REMARK 470 LYS E 28 CG CD CE NZ REMARK 470 ARG E 256 NE CZ NH1 NH2 REMARK 470 LYS E 285 CG CD CE NZ REMARK 470 LYS E 317 CE NZ REMARK 470 PHE E 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 319 CG CD CE NZ REMARK 470 LYS E 345 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG E 308 O HOH E 642 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 54 18.67 -160.78 REMARK 500 ASP E 112 -164.59 -126.94 REMARK 500 ASP E 166 42.87 -149.23 REMARK 500 ASP E 184 77.98 61.62 REMARK 500 ASN E 216 -159.76 -136.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN E 171 OD1 REMARK 620 2 ASP E 184 OD2 94.7 REMARK 620 3 ANP E 401 O2A 99.0 92.3 REMARK 620 4 ANP E 401 O2G 110.2 89.1 150.6 REMARK 620 5 HOH E 715 O 90.9 174.4 86.7 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 184 OD2 REMARK 620 2 ASP E 184 OD1 59.5 REMARK 620 3 ANP E 401 O3G 96.3 155.6 REMARK 620 4 ANP E 401 O1B 91.0 88.4 89.3 REMARK 620 5 HOH E 694 O 87.1 90.2 91.4 178.0 REMARK 620 6 HOH E 701 O 156.3 97.0 107.4 91.3 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ATP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN REMARK 900 KINASE COMPLEXED WITH ATP AND IP20. DBREF 4DG3 E 0 350 UNP P05132 KAPCA_MOUSE 1 351 DBREF 4DG3 A 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 4DG3 MET E -20 UNP P05132 EXPRESSION TAG SEQADV 4DG3 GLY E -19 UNP P05132 EXPRESSION TAG SEQADV 4DG3 SER E -18 UNP P05132 EXPRESSION TAG SEQADV 4DG3 SER E -17 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -16 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -15 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -14 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -13 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -12 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -11 UNP P05132 EXPRESSION TAG SEQADV 4DG3 SER E -10 UNP P05132 EXPRESSION TAG SEQADV 4DG3 SER E -9 UNP P05132 EXPRESSION TAG SEQADV 4DG3 GLY E -8 UNP P05132 EXPRESSION TAG SEQADV 4DG3 LEU E -7 UNP P05132 EXPRESSION TAG SEQADV 4DG3 VAL E -6 UNP P05132 EXPRESSION TAG SEQADV 4DG3 PRO E -5 UNP P05132 EXPRESSION TAG SEQADV 4DG3 ARG E -4 UNP P05132 EXPRESSION TAG SEQADV 4DG3 GLY E -3 UNP P05132 EXPRESSION TAG SEQADV 4DG3 SER E -2 UNP P05132 EXPRESSION TAG SEQADV 4DG3 HIS E -1 UNP P05132 EXPRESSION TAG SEQADV 4DG3 ALA E 336 UNP P05132 ARG 337 ENGINEERED MUTATION SEQRES 1 E 371 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 E 371 LEU VAL PRO ARG GLY SER HIS MET GLY ASN ALA ALA ALA SEQRES 3 E 371 ALA LYS LYS GLY SER GLU GLN GLU SER VAL LYS GLU PHE SEQRES 4 E 371 LEU ALA LYS ALA LYS GLU ASP PHE LEU LYS LYS TRP GLU SEQRES 5 E 371 THR PRO SER GLN ASN THR ALA GLN LEU ASP GLN PHE ASP SEQRES 6 E 371 ARG ILE LYS THR LEU GLY THR GLY SER PHE GLY ARG VAL SEQRES 7 E 371 MET LEU VAL LYS HIS LYS GLU SER GLY ASN HIS TYR ALA SEQRES 8 E 371 MET LYS ILE LEU ASP LYS GLN LYS VAL VAL LYS LEU LYS SEQRES 9 E 371 GLN ILE GLU HIS THR LEU ASN GLU LYS ARG ILE LEU GLN SEQRES 10 E 371 ALA VAL ASN PHE PRO PHE LEU VAL LYS LEU GLU PHE SER SEQRES 11 E 371 PHE LYS ASP ASN SER ASN LEU TYR MET VAL MET GLU TYR SEQRES 12 E 371 VAL ALA GLY GLY GLU MET PHE SER HIS LEU ARG ARG ILE SEQRES 13 E 371 GLY ARG PHE SEP GLU PRO HIS ALA ARG PHE TYR ALA ALA SEQRES 14 E 371 GLN ILE VAL LEU THR PHE GLU TYR LEU HIS SER LEU ASP SEQRES 15 E 371 LEU ILE TYR ARG ASP LEU LYS PRO GLU ASN LEU LEU ILE SEQRES 16 E 371 ASP GLN GLN GLY TYR ILE GLN VAL THR ASP PHE GLY PHE SEQRES 17 E 371 ALA LYS ARG VAL LYS GLY ARG THR TRP TPO LEU CYS GLY SEQRES 18 E 371 THR PRO GLU TYR LEU ALA PRO GLU ILE ILE LEU SER LYS SEQRES 19 E 371 GLY TYR ASN LYS ALA VAL ASP TRP TRP ALA LEU GLY VAL SEQRES 20 E 371 LEU ILE TYR GLU MET ALA ALA GLY TYR PRO PRO PHE PHE SEQRES 21 E 371 ALA ASP GLN PRO ILE GLN ILE TYR GLU LYS ILE VAL SER SEQRES 22 E 371 GLY LYS VAL ARG PHE PRO SER HIS PHE SER SER ASP LEU SEQRES 23 E 371 LYS ASP LEU LEU ARG ASN LEU LEU GLN VAL ASP LEU THR SEQRES 24 E 371 LYS ARG PHE GLY ASN LEU LYS ASN GLY VAL ASN ASP ILE SEQRES 25 E 371 LYS ASN HIS LYS TRP PHE ALA THR THR ASP TRP ILE ALA SEQRES 26 E 371 ILE TYR GLN ARG LYS VAL GLU ALA PRO PHE ILE PRO LYS SEQRES 27 E 371 PHE LYS GLY PRO GLY ASP THR SER ASN PHE ASP ASP TYR SEQRES 28 E 371 GLU GLU GLU GLU ILE ALA VAL SER ILE ASN GLU LYS CYS SEQRES 29 E 371 GLY LYS GLU PHE THR GLU PHE SEQRES 1 A 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 A 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4DG3 SEP E 139 SER PHOSPHOSERINE MODRES 4DG3 TPO E 197 THR PHOSPHOTHREONINE HET SEP E 139 10 HET TPO E 197 11 HET ANP E 401 31 HET MG E 402 1 HET MG E 403 1 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *249(H2 O) HELIX 1 1 SER E 14 THR E 32 1 19 HELIX 2 2 GLN E 39 ASP E 41 5 3 HELIX 3 3 LYS E 76 LEU E 82 1 7 HELIX 4 4 GLN E 84 GLN E 96 1 13 HELIX 5 5 GLU E 127 GLY E 136 1 10 HELIX 6 6 SEP E 139 LEU E 160 1 22 HELIX 7 7 LYS E 168 GLU E 170 5 3 HELIX 8 8 THR E 201 LEU E 205 5 5 HELIX 9 9 ALA E 206 LEU E 211 1 6 HELIX 10 10 LYS E 217 GLY E 234 1 18 HELIX 11 11 GLN E 242 GLY E 253 1 12 HELIX 12 12 SER E 262 LEU E 273 1 12 HELIX 13 13 VAL E 288 ASN E 293 1 6 HELIX 14 14 HIS E 294 ALA E 298 5 5 HELIX 15 15 ASP E 301 GLN E 307 1 7 HELIX 16 16 THR A 6 ALA A 12 1 7 SHEET 1 A 5 PHE E 43 THR E 51 0 SHEET 2 A 5 ARG E 56 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 A 5 HIS E 68 ASP E 75 -1 O ILE E 73 N ARG E 56 SHEET 4 A 5 ASN E 115 GLU E 121 -1 O MET E 120 N ALA E 70 SHEET 5 A 5 LEU E 106 LYS E 111 -1 N PHE E 108 O VAL E 119 SHEET 1 B 2 LEU E 162 ILE E 163 0 SHEET 2 B 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 C 2 LEU E 172 ILE E 174 0 SHEET 2 C 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 LINK C PHE E 138 N SEP E 139 1555 1555 1.34 LINK C SEP E 139 N GLU E 140 1555 1555 1.33 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK OD1 ASN E 171 MG MG E 402 1555 1555 2.02 LINK OD2 ASP E 184 MG MG E 402 1555 1555 2.13 LINK OD2 ASP E 184 MG MG E 403 1555 1555 2.17 LINK OD1 ASP E 184 MG MG E 403 1555 1555 2.24 LINK O2A ANP E 401 MG MG E 402 1555 1555 1.99 LINK O2G ANP E 401 MG MG E 402 1555 1555 2.10 LINK O3G ANP E 401 MG MG E 403 1555 1555 1.98 LINK O1B ANP E 401 MG MG E 403 1555 1555 2.05 LINK MG MG E 402 O HOH E 715 1555 1555 2.10 LINK MG MG E 403 O HOH E 694 1555 1555 2.12 LINK MG MG E 403 O HOH E 701 1555 1555 1.97 SITE 1 AC1 32 ARG A 18 ASN A 20 ALA A 21 HOH A 106 SITE 2 AC1 32 HOH A 108 GLY E 55 VAL E 57 ALA E 70 SITE 3 AC1 32 LYS E 72 VAL E 104 MET E 120 GLU E 121 SITE 4 AC1 32 TYR E 122 VAL E 123 GLU E 127 ASP E 166 SITE 5 AC1 32 LYS E 168 GLU E 170 ASN E 171 LEU E 173 SITE 6 AC1 32 THR E 183 ASP E 184 PHE E 327 MG E 402 SITE 7 AC1 32 MG E 403 HOH E 508 HOH E 509 HOH E 528 SITE 8 AC1 32 HOH E 605 HOH E 694 HOH E 701 HOH E 715 SITE 1 AC2 4 ASN E 171 ASP E 184 ANP E 401 HOH E 715 SITE 1 AC3 4 ASP E 184 ANP E 401 HOH E 694 HOH E 701 CRYST1 72.290 76.690 80.310 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012452 0.00000