HEADER TRANSPORT PROTEIN 25-JAN-12 4DGH TITLE STRUCTURE OF SULP TRANSPORTER STAS DOMAIN FROM VIBRIO CHOLERAE REFINED TITLE 2 TO 1.9 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATE PERMEASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VC_A0077; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STAS DOMAIN, ANION EXCHANGE, MEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.KELLER,C.CHANG,N.MARSHALL,J.BEARDEN,P.DALLOS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 15-FEB-12 4DGH 1 REMARK REVDAT 1 08-FEB-12 4DGH 0 JRNL AUTH J.P.KELLER,C.CHANG,P.DALLOS,A.JOACHIMIAK JRNL TITL STRUCTURE OF SULP TRANSPORTER STAS DOMAIN FROM VIBRIO JRNL TITL 2 CHOLERAE REFINED TO 1.9 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2191 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2978 ; 2.119 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;36.493 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;16.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1646 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 550 REMARK 3 RESIDUE RANGE : A 702 A 758 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6170 70.9924 19.5473 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.0734 REMARK 3 T33: 0.0771 T12: 0.0084 REMARK 3 T13: 0.0219 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.9158 L22: 1.1135 REMARK 3 L33: 0.1018 L12: 0.1047 REMARK 3 L13: 0.2966 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.0538 S13: 0.0114 REMARK 3 S21: -0.0525 S22: 0.0267 S23: 0.0493 REMARK 3 S31: 0.0050 S32: -0.0179 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 423 B 550 REMARK 3 RESIDUE RANGE : B 701 B 741 REMARK 3 ORIGIN FOR THE GROUP (A): 50.1902 70.9373 50.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.1266 T22: 0.0838 REMARK 3 T33: 0.0579 T12: 0.0130 REMARK 3 T13: 0.0355 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.1750 L22: 0.8235 REMARK 3 L33: 0.1825 L12: 0.1401 REMARK 3 L13: 0.2209 L23: -0.2830 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: 0.0307 S13: -0.0545 REMARK 3 S21: 0.0289 S22: 0.0664 S23: -0.1077 REMARK 3 S31: 0.0129 S32: -0.0194 S33: 0.0449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB070298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22098 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 65.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1000.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM KI, 20% PEG 3350, PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.85000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.27500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 45.42500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -45.42500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.27500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.85000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.27500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 45.42500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -45.42500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.27500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.85000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.27500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 45.42500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -45.42500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.27500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 422 REMARK 465 PRO A 551 REMARK 465 SER B 422 REMARK 465 PRO B 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 423 CG OD1 ND2 REMARK 470 GLN A 550 CG CD OE1 NE2 REMARK 470 ASN B 423 N CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I IOD B 608 O HOH B 703 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 737 O HOH A 753 4465 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 479 CE2 TRP A 479 CD2 0.083 REMARK 500 TRP B 479 CE2 TRP B 479 CD2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 447 CB - CG - CD2 ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 451 65.82 -107.43 REMARK 500 PHE B 451 65.01 -103.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 601 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 447 O REMARK 620 2 ARG A 476 O 110.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 610 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MGL RELATED DB: PDB REMARK 900 RELATED ID: 4DGF RELATED DB: PDB REMARK 900 RELATED ID: APC36741.1 RELATED DB: TARGETTRACK DBREF 4DGH A 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 DBREF 4DGH B 425 551 UNP Q9KN88 Q9KN88_VIBCH 425 551 SEQADV 4DGH SER A 422 UNP Q9KN88 EXPRESSION TAG SEQADV 4DGH ASN A 423 UNP Q9KN88 EXPRESSION TAG SEQADV 4DGH ALA A 424 UNP Q9KN88 EXPRESSION TAG SEQADV 4DGH SER B 422 UNP Q9KN88 EXPRESSION TAG SEQADV 4DGH ASN B 423 UNP Q9KN88 EXPRESSION TAG SEQADV 4DGH ALA B 424 UNP Q9KN88 EXPRESSION TAG SEQRES 1 A 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 A 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 A 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 A 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 A 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 A 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 A 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 A 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 A 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 A 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO SEQRES 1 B 130 SER ASN ALA GLU MSE SER TYR GLU LEU ALA GLN HIS GLY SEQRES 2 B 130 ARG SER THR LEU PRO ARG GLU LEU ALA VAL TYR ALA LEU SEQRES 3 B 130 GLU GLY PRO PHE PHE PHE ALA ALA ALA GLU THR PHE GLU SEQRES 4 B 130 ARG VAL MSE GLY SER ILE GLN GLU THR PRO GLN ILE LEU SEQRES 5 B 130 ILE LEU ARG LEU LYS TRP VAL PRO PHE MSE ASP ILE THR SEQRES 6 B 130 GLY ILE GLN THR LEU GLU GLU MSE ILE GLN SER PHE HIS SEQRES 7 B 130 LYS ARG GLY ILE LYS VAL LEU ILE SER GLY ALA ASN SER SEQRES 8 B 130 ARG VAL SER GLN LYS LEU VAL LYS ALA GLY ILE VAL LYS SEQRES 9 B 130 LEU VAL GLY GLU GLN ASN VAL TYR PRO VAL PHE GLU GLY SEQRES 10 B 130 ALA LEU SER ALA ALA LEU THR GLU ILE GLU ALA GLN PRO MODRES 4DGH MSE A 426 MET SELENOMETHIONINE MODRES 4DGH MSE A 463 MET SELENOMETHIONINE MODRES 4DGH MSE A 483 MET SELENOMETHIONINE MODRES 4DGH MSE A 494 MET SELENOMETHIONINE MODRES 4DGH MSE B 426 MET SELENOMETHIONINE MODRES 4DGH MSE B 463 MET SELENOMETHIONINE MODRES 4DGH MSE B 483 MET SELENOMETHIONINE MODRES 4DGH MSE B 494 MET SELENOMETHIONINE HET MSE A 426 8 HET MSE A 463 8 HET MSE A 483 8 HET MSE A 494 16 HET MSE B 426 8 HET MSE B 463 8 HET MSE B 483 8 HET MSE B 494 8 HET K A 601 1 HET IOD A 602 1 HET IOD A 603 1 HET IOD A 604 1 HET IOD A 605 1 HET IOD A 606 1 HET IOD A 607 1 HET GOL A 608 6 HET GOL A 609 6 HET IOD B 601 1 HET IOD B 602 1 HET IOD B 603 1 HET IOD B 604 1 HET IOD B 605 1 HET IOD B 606 1 HET IOD B 607 1 HET IOD B 608 1 HET IOD B 609 1 HET GOL B 610 6 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 K K 1+ FORMUL 4 IOD 15(I 1-) FORMUL 10 GOL 3(C3 H8 O3) FORMUL 22 HOH *99(H2 O) HELIX 1 1 ASN A 423 HIS A 433 1 11 HELIX 2 2 PHE A 452 ILE A 466 1 15 HELIX 3 3 ASP A 484 LYS A 500 1 17 HELIX 4 4 ASN A 511 ALA A 521 1 11 HELIX 5 5 GLY A 522 GLY A 528 1 7 HELIX 6 6 VAL A 535 GLN A 550 1 16 HELIX 7 7 ALA B 424 HIS B 433 1 10 HELIX 8 8 PHE B 452 ILE B 466 1 15 HELIX 9 9 ASP B 484 ARG B 501 1 18 HELIX 10 10 ASN B 511 ALA B 521 1 11 HELIX 11 11 GLY B 522 GLY B 528 1 7 HELIX 12 12 VAL B 535 ALA B 549 1 15 SHEET 1 A 4 LEU A 442 ALA A 446 0 SHEET 2 A 4 ILE A 472 ARG A 476 1 O ILE A 474 N TYR A 445 SHEET 3 A 4 LYS A 504 SER A 508 1 O LEU A 506 N LEU A 475 SHEET 4 A 4 VAL A 532 TYR A 533 1 O TYR A 533 N ILE A 507 SHEET 1 B 4 LEU B 442 ALA B 446 0 SHEET 2 B 4 ILE B 472 ARG B 476 1 O ARG B 476 N TYR B 445 SHEET 3 B 4 LYS B 504 SER B 508 1 O LEU B 506 N LEU B 475 SHEET 4 B 4 VAL B 532 TYR B 533 1 O TYR B 533 N ILE B 507 LINK C GLU A 425 N MSE A 426 1555 1555 1.35 LINK C MSE A 426 N SER A 427 1555 1555 1.34 LINK C VAL A 462 N MSE A 463 1555 1555 1.32 LINK C MSE A 463 N GLY A 464 1555 1555 1.32 LINK C PHE A 482 N MSE A 483 1555 1555 1.34 LINK C MSE A 483 N ASP A 484 1555 1555 1.33 LINK C GLU A 493 N AMSE A 494 1555 1555 1.33 LINK C GLU A 493 N BMSE A 494 1555 1555 1.34 LINK C AMSE A 494 N ILE A 495 1555 1555 1.32 LINK C BMSE A 494 N ILE A 495 1555 1555 1.33 LINK C GLU B 425 N MSE B 426 1555 1555 1.34 LINK C MSE B 426 N SER B 427 1555 1555 1.33 LINK C VAL B 462 N MSE B 463 1555 1555 1.33 LINK C MSE B 463 N GLY B 464 1555 1555 1.33 LINK C PHE B 482 N MSE B 483 1555 1555 1.33 LINK C MSE B 483 N ASP B 484 1555 1555 1.32 LINK C GLU B 493 N MSE B 494 1555 1555 1.33 LINK C MSE B 494 N ILE B 495 1555 1555 1.33 LINK O LEU A 447 K K A 601 1555 1555 2.26 LINK O ARG A 476 K K A 601 1555 1555 2.83 SITE 1 AC1 5 LEU A 447 ARG A 476 LEU A 477 LYS A 478 SITE 2 AC1 5 TRP A 479 SITE 1 AC2 3 ARG A 440 LYS A 517 IOD A 603 SITE 1 AC3 1 IOD A 602 SITE 1 AC4 5 ARG A 476 LYS A 478 SER A 508 GLY A 509 SITE 2 AC4 5 HOH A 707 SITE 1 AC5 1 PRO A 534 SITE 1 AC6 1 ARG A 476 SITE 1 AC7 3 GLN A 432 HIS A 433 HOH A 726 SITE 1 AC8 4 GLU A 529 GLN A 530 VAL A 532 GLY B 434 SITE 1 AC9 3 MSE B 483 ARG B 513 LYS B 517 SITE 1 BC1 1 ARG B 476 SITE 1 BC2 1 PRO B 534 SITE 1 BC3 1 IOD B 607 SITE 1 BC4 4 ARG B 476 SER B 508 GLY B 509 HOH B 728 SITE 1 BC5 1 VAL A 519 SITE 1 BC6 2 LYS B 517 IOD B 604 SITE 1 BC7 4 LYS A 525 GLU A 529 GLN B 516 HOH B 703 SITE 1 BC8 2 GLU A 529 ARG B 435 SITE 1 BC9 4 LYS B 504 VAL B 527 HOH B 712 HOH B 724 CRYST1 90.850 90.850 65.180 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015342 0.00000