HEADER HYDROLASE/LIGASE 27-JAN-12 4DHI TITLE STRUCTURE OF C. ELEGANS OTUB1 BOUND TO HUMAN UBC13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE OTUBAIN-LIKE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: OTUB1, DEUBIQUITINATING ENZYME OTUBAIN-LIKE, UBIQUITIN- COMPND 5 SPECIFIC-PROCESSING PROTEASE OTUBAIN-LIKE; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 N; COMPND 10 CHAIN: D; COMPND 11 SYNONYM: UBC13, BENDLESS-LIKE UBIQUITIN-CONJUGATING ENZYME, UBIQUITIN COMPND 12 CARRIER PROTEIN N, UBIQUITIN-PROTEIN LIGASE N; COMPND 13 EC: 6.3.2.19; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: OTUB-1, C25D7.8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBE2N, BLU; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN E2 ENZYME FOLD, UBIQUITINATION, HYDROLASE-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.WIENER,X.ZHANG,T.WANG,C.WOLBERGER REVDAT 5 13-SEP-23 4DHI 1 REMARK REVDAT 4 04-APR-12 4DHI 1 JRNL REVDAT 3 14-MAR-12 4DHI 1 JRNL REVDAT 2 29-FEB-12 4DHI 1 JRNL REVDAT 1 22-FEB-12 4DHI 0 JRNL AUTH R.WIENER,X.ZHANG,T.WANG,C.WOLBERGER JRNL TITL THE MECHANISM OF OTUB1-MEDIATED INHIBITION OF JRNL TITL 2 UBIQUITINATION. JRNL REF NATURE V. 483 618 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22367539 JRNL DOI 10.1038/NATURE10911 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3238 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4408 ; 1.249 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 5.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;35.288 ;23.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;14.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2493 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1961 ; 0.907 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3182 ; 1.764 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 2.430 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 4.166 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 275 REMARK 3 RESIDUE RANGE : D 3 D 152 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8727 37.3876 -26.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0305 REMARK 3 T33: 0.0451 T12: 0.0368 REMARK 3 T13: 0.0003 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.0872 L22: 0.1549 REMARK 3 L33: 0.1943 L12: -0.0216 REMARK 3 L13: 0.0815 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0025 S13: -0.0192 REMARK 3 S21: -0.0549 S22: -0.0189 S23: 0.0435 REMARK 3 S31: 0.0501 S32: 0.0026 S33: -0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4DHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.034 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1J7D AND 2ZFY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, 1 M REMARK 280 TRISODIUM CITRATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.87067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.74133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.80600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 149.67667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.93533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.87067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 119.74133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.67667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.80600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.93533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 320 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 ASP B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 GLN B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 GLU B 16 REMARK 465 ALA B 17 REMARK 465 VAL B 18 REMARK 465 VAL B 19 REMARK 465 THR B 20 REMARK 465 ASP B 21 REMARK 465 ASP B 22 REMARK 465 GLU B 23 REMARK 465 ILE B 24 REMARK 465 VAL B 25 REMARK 465 LEU B 26 REMARK 465 GLN B 27 REMARK 465 ASP B 28 REMARK 465 GLN B 29 REMARK 465 GLN B 30 REMARK 465 LEU B 31 REMARK 465 LYS B 32 REMARK 465 THR B 33 REMARK 465 ILE B 34 REMARK 465 GLU B 35 REMARK 465 ASP B 36 REMARK 465 GLU B 37 REMARK 465 SER B 276 REMARK 465 THR B 277 REMARK 465 GLU B 278 REMARK 465 ALA B 279 REMARK 465 SER B 280 REMARK 465 GLU B 281 REMARK 465 ILE B 282 REMARK 465 GLU B 283 REMARK 465 ASN B 284 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 85 -168.41 -103.43 REMARK 500 SER B 250 91.82 -64.78 REMARK 500 ASP B 252 -9.10 91.79 REMARK 500 ASP D 44 -6.92 78.46 REMARK 500 LYS D 92 -121.71 -122.24 REMARK 500 LEU D 121 85.99 -68.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DHJ RELATED DB: PDB REMARK 900 RELATED ID: 4DHZ RELATED DB: PDB DBREF 4DHI B 1 284 UNP Q9XVR6 OTUBL_CAEEL 1 284 DBREF 4DHI D 1 152 UNP P61088 UBE2N_HUMAN 1 152 SEQRES 1 B 284 MET ALA ASN GLU PRO GLN LYS SER ASP ASP ASN GLY GLN SEQRES 2 B 284 ALA ALA GLU ALA VAL VAL THR ASP ASP GLU ILE VAL LEU SEQRES 3 B 284 GLN ASP GLN GLN LEU LYS THR ILE GLU ASP GLU GLN LYS SEQRES 4 B 284 SER VAL PRO LEU VAL ALA THR LEU ALA PRO PHE SER ILE SEQRES 5 B 284 LEU CYS ALA GLU TYR ASP ASN GLU THR SER ALA ALA PHE SEQRES 6 B 284 LEU SER LYS ALA THR GLU LEU SER GLU VAL TYR GLY GLU SEQRES 7 B 284 ILE ARG TYR ILE ARG GLY ASP GLY ASN CYS PHE TYR ARG SEQRES 8 B 284 ALA ILE LEU VAL GLY LEU ILE GLU ILE MET LEU LYS ASP SEQRES 9 B 284 ARG ALA ARG LEU GLU LYS PHE ILE ALA SER SER ARG ASP SEQRES 10 B 284 TRP THR ARG THR LEU VAL GLU LEU GLY PHE PRO ASP TRP SEQRES 11 B 284 THR CYS THR ASP PHE CYS ASP PHE PHE ILE GLU PHE LEU SEQRES 12 B 284 GLU LYS ILE HIS SER GLY VAL HIS THR GLU GLU ALA VAL SEQRES 13 B 284 TYR THR ILE LEU ASN ASP ASP GLY SER ALA ASN TYR ILE SEQRES 14 B 284 LEU MET PHE PHE ARG LEU ILE THR SER ALA PHE LEU LYS SEQRES 15 B 284 GLN ASN SER GLU GLU TYR ALA PRO PHE ILE ASP GLU GLY SEQRES 16 B 284 MET THR VAL ALA GLN TYR CYS GLU GLN GLU ILE GLU PRO SEQRES 17 B 284 MET TRP LYS ASP ALA ASP HIS LEU ALA ILE ASN SER LEU SEQRES 18 B 284 ILE LYS ALA ALA GLY THR ARG VAL ARG ILE GLU TYR MET SEQRES 19 B 284 ASP ARG THR ALA ALA PRO ASN GLY GLY TRP HIS TYR ASP SEQRES 20 B 284 ILE PRO SER ASP ASP GLN GLN ILE ALA PRO GLU ILE THR SEQRES 21 B 284 LEU LEU TYR ARG PRO GLY HIS TYR ASP VAL ILE TYR LYS SEQRES 22 B 284 LYS ASP SER THR GLU ALA SER GLU ILE GLU ASN SEQRES 1 D 152 MET ALA GLY LEU PRO ARG ARG ILE ILE LYS GLU THR GLN SEQRES 2 D 152 ARG LEU LEU ALA GLU PRO VAL PRO GLY ILE LYS ALA GLU SEQRES 3 D 152 PRO ASP GLU SER ASN ALA ARG TYR PHE HIS VAL VAL ILE SEQRES 4 D 152 ALA GLY PRO GLN ASP SER PRO PHE GLU GLY GLY THR PHE SEQRES 5 D 152 LYS LEU GLU LEU PHE LEU PRO GLU GLU TYR PRO MET ALA SEQRES 6 D 152 ALA PRO LYS VAL ARG PHE MET THR LYS ILE TYR HIS PRO SEQRES 7 D 152 ASN VAL ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU SEQRES 8 D 152 LYS ASP LYS TRP SER PRO ALA LEU GLN ILE ARG THR VAL SEQRES 9 D 152 LEU LEU SER ILE GLN ALA LEU LEU SER ALA PRO ASN PRO SEQRES 10 D 152 ASP ASP PRO LEU ALA ASN ASP VAL ALA GLU GLN TRP LYS SEQRES 11 D 152 THR ASN GLU ALA GLN ALA ILE GLU THR ALA ARG ALA TRP SEQRES 12 D 152 THR ARG LEU TYR ALA MET ASN ASN ILE FORMUL 3 HOH *374(H2 O) HELIX 1 1 SER B 51 GLU B 56 5 6 HELIX 2 2 SER B 62 GLU B 74 1 13 HELIX 3 3 ASN B 87 ASP B 104 1 18 HELIX 4 4 ASP B 104 LEU B 125 1 22 HELIX 5 5 PRO B 128 SER B 148 1 21 HELIX 6 6 THR B 152 ASP B 162 1 11 HELIX 7 7 ASP B 162 ASN B 184 1 23 HELIX 8 8 ASN B 184 ALA B 189 1 6 HELIX 9 9 PRO B 190 ILE B 192 5 3 HELIX 10 10 THR B 197 ILE B 206 1 10 HELIX 11 11 ASP B 214 ALA B 225 1 12 HELIX 12 12 ASP B 235 ALA B 239 5 5 HELIX 13 13 PRO D 5 GLU D 18 1 14 HELIX 14 14 LEU D 88 LYS D 92 5 5 HELIX 15 15 GLN D 100 ALA D 114 1 15 HELIX 16 16 ASN D 123 ASN D 132 1 10 HELIX 17 17 ASN D 132 ALA D 148 1 17 SHEET 1 A 6 ALA B 48 PRO B 49 0 SHEET 2 A 6 TYR B 76 ARG B 80 -1 O ILE B 79 N ALA B 48 SHEET 3 A 6 HIS B 267 LYS B 273 -1 O VAL B 270 N ARG B 80 SHEET 4 A 6 ILE B 259 ARG B 264 -1 N ARG B 264 O HIS B 267 SHEET 5 A 6 VAL B 229 TYR B 233 1 N GLU B 232 O LEU B 261 SHEET 6 A 6 HIS B 245 ILE B 248 -1 O ILE B 248 N VAL B 229 SHEET 1 B 4 ILE D 23 PRO D 27 0 SHEET 2 B 4 TYR D 34 ALA D 40 -1 O HIS D 36 N GLU D 26 SHEET 3 B 4 THR D 51 PHE D 57 -1 O LEU D 56 N PHE D 35 SHEET 4 B 4 LYS D 68 PHE D 71 -1 O LYS D 68 N PHE D 57 CISPEP 1 ILE B 248 PRO B 249 0 0.16 CISPEP 2 TYR D 62 PRO D 63 0 8.93 CRYST1 111.070 111.070 179.612 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009003 0.005198 0.000000 0.00000 SCALE2 0.000000 0.010396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005568 0.00000