HEADER PROTEIN BINDING/INHIBITOR 30-JAN-12 4DHR TITLE SMALL-MOLECULE INHIBITORS OF 14-3-3 PROTEIN-PROTEIN INTERACTIONS FROM TITLE 2 VIRTUAL SCREENING COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-231; COMPND 5 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1, STRATIFIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HME1, SFN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS ADAPTER PROTEIN, PHOSPHOPROTEIN BINDING, PROTEIN BINDING-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.THIEL,L.ROEGLIN,O.KOHLBACHER,C.OTTMANN REVDAT 2 04-SEP-13 4DHR 1 JRNL REVDAT 1 31-JUL-13 4DHR 0 JRNL AUTH P.THIEL,L.ROGLIN,N.MEISSNER,S.HENNIG,O.KOHLBACHER,C.OTTMANN JRNL TITL VIRTUAL SCREENING AND EXPERIMENTAL VALIDATION REVEAL NOVEL JRNL TITL 2 SMALL-MOLECULE INHIBITORS OF 14-3-3 PROTEIN-PROTEIN JRNL TITL 3 INTERACTIONS. JRNL REF CHEM.COMMUN.(CAMB.) V. 49 8468 2013 JRNL REFN ISSN 1359-7345 JRNL PMID 23939230 JRNL DOI 10.1039/C3CC44612C REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2154 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2964 ; 2.301 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 4.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;36.976 ;24.906 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;13.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.218 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1665 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 2.508 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2109 ; 3.600 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 4.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 811 ; 7.076 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2154 ; 2.752 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 339 ;13.677 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2082 ; 7.834 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CURVED MULTILAYER MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095M HEPES NA, 0.19M CALCIUM REMARK 280 CHLORIDE, 5% GLYCEROL, 28% PEG400, PH 7.1, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.10000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.10000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.10000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.17000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.10000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.17000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 679 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 34 O HOH A 662 1.85 REMARK 500 OD1 ASP A 145 O HOH A 611 1.90 REMARK 500 O HOH A 469 O HOH A 629 2.11 REMARK 500 O HOH A 618 O HOH A 722 2.17 REMARK 500 O ALA A -3 O HOH A 597 2.18 REMARK 500 CG ARG A 142 O HOH A 412 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 35 CD GLU A 35 OE2 -0.081 REMARK 500 ASP A 139 C ASP A 139 O 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU A 36 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 142 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 211 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 74.51 -106.48 REMARK 500 HIS A 106 36.73 -145.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 139 23.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 593 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 679 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 573 O REMARK 620 2 HOH A 680 O 117.9 REMARK 620 3 GLU A 86 OE1 159.4 78.9 REMARK 620 4 GLU A 89 OE2 67.5 90.7 102.5 REMARK 620 5 GLU A 86 OE2 105.5 133.7 55.5 91.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 564 O REMARK 620 2 GLU A 161 O 81.1 REMARK 620 3 HOH A 513 O 155.7 81.7 REMARK 620 4 HOH A 702 O 141.2 125.9 63.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 110 O REMARK 620 2 GLU A 35 OE1 87.2 REMARK 620 3 HOH A 591 O 101.8 162.3 REMARK 620 4 HOH A 545 O 86.7 82.3 83.0 REMARK 620 5 HOH A 604 O 168.8 81.7 88.7 90.9 REMARK 620 6 GLU A 35 OE2 85.4 48.3 146.6 130.2 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 474 O REMARK 620 2 GLU A 2 OE1 80.7 REMARK 620 3 HOH A 448 O 70.1 80.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 664 O REMARK 620 2 GLN A 8 OE1 108.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y04 A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TOL RELATED DB: PDB REMARK 900 RELATED ID: 3T0M RELATED DB: PDB REMARK 900 RELATED ID: 3U9X RELATED DB: PDB REMARK 900 RELATED ID: 4DHM RELATED DB: PDB REMARK 900 RELATED ID: 4DHN RELATED DB: PDB REMARK 900 RELATED ID: 4DHO RELATED DB: PDB REMARK 900 RELATED ID: 4DHP RELATED DB: PDB REMARK 900 RELATED ID: 4DHQ RELATED DB: PDB REMARK 900 RELATED ID: 4DHS RELATED DB: PDB REMARK 900 RELATED ID: 4DHT RELATED DB: PDB REMARK 900 RELATED ID: 4DHU RELATED DB: PDB DBREF 4DHR A 1 231 UNP P31947 1433S_HUMAN 1 231 SEQADV 4DHR ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 4DHR MET A -2 UNP P31947 EXPRESSION TAG SEQADV 4DHR GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 4DHR SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 235 ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN LYS SEQRES 2 A 235 ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP MET SEQRES 3 A 235 ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU GLU SEQRES 4 A 235 LEU SER CSO GLU GLU ARG ASN LEU LEU SER VAL ALA TYR SEQRES 5 A 235 LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG VAL SEQRES 6 A 235 LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SER SEQRES 7 A 235 GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU LYS SEQRES 8 A 235 VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL LEU SEQRES 9 A 235 GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY ASP SEQRES 10 A 235 ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY ASP SEQRES 11 A 235 TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP ASP SEQRES 12 A 235 LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR GLN SEQRES 13 A 235 GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO THR SEQRES 14 A 235 ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER VAL SEQRES 15 A 235 PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA ILE SEQRES 16 A 235 SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA ASP SEQRES 17 A 235 LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER THR SEQRES 18 A 235 LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP SEQRES 19 A 235 THR MODRES 4DHR CSO A 38 CYS S-HYDROXYCYSTEINE HET CSO A 38 11 HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET CL A 306 1 HET CL A 307 1 HET GOL A 308 6 HET Y04 A 309 22 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM Y04 (2-{2-[(2-CHLOROPHENYL)AMINO]-2-OXOETHOXY}PHENYL) HETNAM 2 Y04 PHOSPHONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 MG 5(MG 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 GOL C3 H8 O3 FORMUL 10 Y04 C14 H13 CL N O5 P FORMUL 11 HOH *323(H2 O) HELIX 1 1 GLU A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 LYS A 32 1 15 HELIX 3 3 SER A 37 ASN A 70 1 34 HELIX 4 4 PRO A 79 SER A 105 1 27 HELIX 5 5 HIS A 106 ALA A 111 1 6 HELIX 6 6 ASP A 113 ALA A 135 1 23 HELIX 7 7 THR A 136 MET A 162 1 27 HELIX 8 8 ASN A 166 ILE A 183 1 18 HELIX 9 9 SER A 186 LEU A 205 1 20 HELIX 10 10 HIS A 206 LEU A 208 5 3 HELIX 11 11 SER A 209 THR A 231 1 23 LINK C SER A 37 N CSO A 38 1555 1555 1.32 LINK C CSO A 38 N GLU A 39 1555 1555 1.30 LINK MG MG A 305 O AHOH A 573 1555 1555 1.88 LINK MG MG A 305 O HOH A 680 1555 1555 2.03 LINK MG MG A 302 O HOH A 564 1555 1555 2.23 LINK OE1BGLU A 86 MG MG A 305 1555 1555 2.24 LINK O GLU A 161 MG MG A 302 1555 1555 2.24 LINK O GLU A 110 MG MG A 304 1555 1555 2.27 LINK MG MG A 303 O BHOH A 474 1555 1555 2.29 LINK OE1 GLU A 35 MG MG A 304 1555 1555 2.32 LINK MG MG A 304 O HOH A 591 1555 1555 2.33 LINK MG MG A 304 O HOH A 545 1555 1555 2.34 LINK MG MG A 304 O HOH A 604 1555 1555 2.36 LINK OE2 GLU A 89 MG MG A 305 1555 1555 2.37 LINK OE1 GLU A 2 MG MG A 303 1555 1555 2.38 LINK MG MG A 305 O BHOH A 573 1555 1555 2.40 LINK OE2BGLU A 86 MG MG A 305 1555 1555 2.44 LINK MG MG A 301 O BHOH A 664 1555 1555 2.44 LINK MG MG A 303 O HOH A 448 1555 1555 2.58 LINK MG MG A 301 O AHOH A 664 1555 1555 2.58 LINK MG MG A 302 O HOH A 513 1555 1555 2.63 LINK OE2 GLU A 35 MG MG A 304 1555 1555 2.66 LINK MG MG A 302 O HOH A 702 1555 1555 2.68 LINK MG MG A 303 O AHOH A 474 1555 1555 2.71 LINK OE1 GLN A 8 MG MG A 301 1555 1555 2.80 CISPEP 1 SER A 105 HIS A 106 0 11.21 SITE 1 AC1 4 GLN A 8 GLU A 80 HOH A 664 HOH A 692 SITE 1 AC2 4 GLU A 161 HOH A 513 HOH A 564 HOH A 702 SITE 1 AC3 3 GLU A 2 HOH A 448 HOH A 474 SITE 1 AC4 6 GLU A 35 GLU A 110 GLU A 188 HOH A 545 SITE 2 AC4 6 HOH A 591 HOH A 604 SITE 1 AC5 4 GLU A 86 GLU A 89 HOH A 573 HOH A 680 SITE 1 AC6 3 LYS A 9 HOH A 401 HOH A 590 SITE 1 AC7 1 LYS A 109 SITE 1 AC8 6 MET A 202 LEU A 205 THR A 217 MET A 220 SITE 2 AC8 6 HOH A 649 HOH A 699 SITE 1 AC9 11 GLY A 53 ARG A 56 ARG A 60 ARG A 129 SITE 2 AC9 11 TYR A 130 ASN A 175 HOH A 507 HOH A 519 SITE 3 AC9 11 HOH A 620 HOH A 621 HOH A 722 CRYST1 82.200 112.340 62.510 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015997 0.00000