HEADER HYDROLASE/HYDROLASE INHIBITOR 02-FEB-12 4DJP TITLE CRYSTAL STRUCTURE OF WILD-TYPE HIV-1 PROTEASE IN COMPLEX WITH MKP73 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HIV-1 PROTEASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: SF2; SOURCE 5 GENE: GAG-POL, POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TAP56; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC35 KEYWDS HIV-1 PROTEASE, DRUG RESISTANCE, DRUG DESIGN, PROTEASE INHIBITORS, KEYWDS 2 AIDS, ASPARTYL PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,M.N.L.NALAM REVDAT 4 28-FEB-24 4DJP 1 REMARK SEQADV REVDAT 3 15-NOV-17 4DJP 1 REMARK REVDAT 2 02-JAN-13 4DJP 1 JRNL REVDAT 1 01-AUG-12 4DJP 0 JRNL AUTH M.K.PARAI,D.J.HUGGINS,H.CAO,M.N.NALAM,A.ALI,C.A.SCHIFFER, JRNL AUTH 2 B.TIDOR,T.M.RANA JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL AND STRUCTURAL EVALUATIONS JRNL TITL 2 OF NOVEL HIV-1 PROTEASE INHIBITORS TO COMBAT DRUG JRNL TITL 3 RESISTANCE. JRNL REF J.MED.CHEM. V. 55 6328 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22708897 JRNL DOI 10.1021/JM300238H REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.952 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1657 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1122 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2265 ; 1.296 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2770 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;39.659 ;24.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 287 ;10.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1820 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 298 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 0.551 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 428 ; 0.158 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1681 ; 0.893 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 631 ; 1.567 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 584 ; 2.293 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 RESIDUE RANGE : A 94 A 99 REMARK 3 RESIDUE RANGE : A 6 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2255 26.4550 29.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.1008 REMARK 3 T33: 0.0312 T12: 0.0299 REMARK 3 T13: 0.0035 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.6145 L22: 3.9745 REMARK 3 L33: 3.1776 L12: -0.2737 REMARK 3 L13: 0.2895 L23: -0.6640 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.2714 S13: 0.1031 REMARK 3 S21: 0.3520 S22: 0.0499 S23: -0.1073 REMARK 3 S31: -0.2101 S32: -0.0099 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 RESIDUE RANGE : B 94 B 99 REMARK 3 RESIDUE RANGE : B 6 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6606 17.2630 23.1282 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: 0.0559 REMARK 3 T33: 0.0672 T12: 0.0051 REMARK 3 T13: 0.0117 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.0362 L22: 3.6033 REMARK 3 L33: 4.6559 L12: -0.9478 REMARK 3 L13: 0.2309 L23: 0.5926 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.0638 S13: -0.2747 REMARK 3 S21: 0.1873 S22: 0.1156 S23: 0.2409 REMARK 3 S31: 0.2649 S32: -0.1293 S33: -0.0956 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5032 27.2056 18.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0157 REMARK 3 T33: 0.0117 T12: 0.0080 REMARK 3 T13: -0.0021 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 5.9923 L22: 3.7185 REMARK 3 L33: 2.0070 L12: 1.3285 REMARK 3 L13: 0.8010 L23: -2.3729 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0758 S13: 0.0335 REMARK 3 S21: 0.0208 S22: -0.0909 S23: -0.1529 REMARK 3 S31: -0.0280 S32: 0.0907 S33: 0.1255 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8035 27.7101 19.4153 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0221 REMARK 3 T33: 0.0376 T12: 0.0151 REMARK 3 T13: 0.0081 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 7.4738 L22: 3.5027 REMARK 3 L33: 2.8893 L12: 0.2062 REMARK 3 L13: 2.4728 L23: -1.4734 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.0457 S13: -0.1378 REMARK 3 S21: 0.0124 S22: 0.1334 S23: 0.3110 REMARK 3 S31: -0.0593 S32: -0.0753 S33: -0.1183 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5421 31.0247 23.4968 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1209 REMARK 3 T33: 0.3009 T12: -0.0530 REMARK 3 T13: -0.1233 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 10.6694 L22: 6.6404 REMARK 3 L33: 5.3140 L12: -2.5217 REMARK 3 L13: -4.7693 L23: 0.3045 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.1702 S13: 0.2985 REMARK 3 S21: 0.2962 S22: -0.2598 S23: -1.2653 REMARK 3 S31: -0.2895 S32: 0.4738 S33: 0.3050 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3547 22.0052 18.1788 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1541 REMARK 3 T33: 0.3611 T12: -0.0017 REMARK 3 T13: -0.0344 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 16.0642 L22: 4.3526 REMARK 3 L33: 4.1352 L12: -5.7288 REMARK 3 L13: -3.9333 L23: 2.8975 REMARK 3 S TENSOR REMARK 3 S11: 0.1819 S12: 0.3853 S13: -0.6877 REMARK 3 S21: -0.2491 S22: -0.1788 S23: 0.7542 REMARK 3 S31: -0.2287 S32: -0.5816 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7408 31.1362 9.4985 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1932 REMARK 3 T33: 0.1598 T12: -0.0159 REMARK 3 T13: 0.0192 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 4.1414 L22: 2.0984 REMARK 3 L33: 4.9484 L12: -0.4756 REMARK 3 L13: -0.4377 L23: 1.9384 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.2992 S13: 0.1873 REMARK 3 S21: -0.2230 S22: 0.1003 S23: -0.4351 REMARK 3 S31: -0.1211 S32: 0.6659 S33: -0.1127 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3257 34.4385 13.2277 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.2673 REMARK 3 T33: 0.1237 T12: 0.0095 REMARK 3 T13: -0.0084 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 6.0210 L22: 9.0408 REMARK 3 L33: 3.4432 L12: -3.0513 REMARK 3 L13: -2.0849 L23: 4.2645 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: 0.2876 S13: -0.0049 REMARK 3 S21: -0.0386 S22: -0.1754 S23: 0.6646 REMARK 3 S31: 0.0025 S32: -0.6922 S33: 0.0604 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4957 30.5846 4.3699 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0527 REMARK 3 T33: 0.0205 T12: 0.0083 REMARK 3 T13: -0.0061 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 13.0594 L22: 2.7466 REMARK 3 L33: 4.1658 L12: -1.9542 REMARK 3 L13: -3.4763 L23: 0.2950 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.1543 S13: -0.1526 REMARK 3 S21: -0.2107 S22: -0.0885 S23: -0.0265 REMARK 3 S31: 0.0527 S32: 0.1129 S33: 0.1255 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4303 39.4924 11.3323 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0322 REMARK 3 T33: 0.0441 T12: -0.0019 REMARK 3 T13: 0.0013 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 12.5269 L22: 3.2489 REMARK 3 L33: 1.4221 L12: -4.0452 REMARK 3 L13: -1.6468 L23: -0.8848 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.0813 S13: -0.0172 REMARK 3 S21: 0.0114 S22: 0.0286 S23: 0.1842 REMARK 3 S31: -0.0881 S32: -0.0366 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0967 33.5463 14.3543 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0210 REMARK 3 T33: 0.0490 T12: -0.0073 REMARK 3 T13: -0.0227 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0167 L22: 3.5182 REMARK 3 L33: 6.1232 L12: 0.6385 REMARK 3 L13: -0.5423 L23: -2.3490 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0183 S13: 0.1592 REMARK 3 S21: -0.0139 S22: -0.0508 S23: 0.1681 REMARK 3 S31: -0.2540 S32: 0.0117 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4399 29.3137 12.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0975 REMARK 3 T33: 0.0584 T12: -0.0235 REMARK 3 T13: -0.0348 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 5.5099 L22: 3.7928 REMARK 3 L33: 5.3958 L12: -3.8974 REMARK 3 L13: 5.4284 L23: -4.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.2847 S12: 0.2632 S13: -0.1876 REMARK 3 S21: -0.3338 S22: -0.0542 S23: 0.2726 REMARK 3 S31: 0.3297 S32: 0.2020 S33: -0.2305 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6850 19.1715 19.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0191 REMARK 3 T33: 0.0302 T12: 0.0092 REMARK 3 T13: -0.0044 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 7.3209 L22: 2.6710 REMARK 3 L33: 3.8633 L12: -2.0955 REMARK 3 L13: 1.7254 L23: -2.4080 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.0698 S13: -0.2800 REMARK 3 S21: -0.0092 S22: -0.0324 S23: -0.0731 REMARK 3 S31: 0.3040 S32: 0.0449 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9484 29.1066 27.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1143 REMARK 3 T33: 0.1722 T12: 0.0915 REMARK 3 T13: 0.0671 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 14.1443 L22: 6.0275 REMARK 3 L33: 2.6277 L12: -6.2534 REMARK 3 L13: -1.0905 L23: -1.3048 REMARK 3 S TENSOR REMARK 3 S11: -0.6793 S12: -1.0322 S13: 0.1207 REMARK 3 S21: 0.5964 S22: 0.7483 S23: 0.5743 REMARK 3 S31: -0.0017 S32: -0.0788 S33: -0.0690 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8056 22.6384 10.2833 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.1850 REMARK 3 T33: 0.2153 T12: 0.0819 REMARK 3 T13: 0.0649 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 0.5706 L22: 8.0811 REMARK 3 L33: 16.2611 L12: -1.9169 REMARK 3 L13: 0.6873 L23: -7.3095 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: 0.1266 S13: -0.0298 REMARK 3 S21: -0.4441 S22: -0.4573 S23: -0.0634 REMARK 3 S31: 0.5214 S32: 0.3785 S33: 0.3417 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5367 36.7878 21.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.1338 REMARK 3 T33: 0.2264 T12: 0.0495 REMARK 3 T13: 0.0415 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 9.5920 L22: 13.5760 REMARK 3 L33: 13.8575 L12: 7.8792 REMARK 3 L13: -10.8626 L23: -12.2330 REMARK 3 S TENSOR REMARK 3 S11: 0.2563 S12: -0.3256 S13: 0.2542 REMARK 3 S21: 0.6414 S22: 0.0914 S23: 0.4577 REMARK 3 S31: -0.4836 S32: 0.1854 S33: -0.3477 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8228 23.8584 24.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0436 REMARK 3 T33: 0.1503 T12: -0.0366 REMARK 3 T13: -0.0695 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 12.6025 L22: 6.9744 REMARK 3 L33: 22.9981 L12: -1.9639 REMARK 3 L13: -8.5935 L23: 1.6054 REMARK 3 S TENSOR REMARK 3 S11: -0.1122 S12: -0.0272 S13: 0.3491 REMARK 3 S21: 0.4033 S22: -0.0759 S23: -0.4097 REMARK 3 S31: -0.1394 S32: 0.5103 S33: 0.1882 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0614 23.2137 24.8805 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.1586 REMARK 3 T33: 0.4057 T12: 0.0623 REMARK 3 T13: 0.2017 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 17.0399 L22: 15.3747 REMARK 3 L33: 4.2250 L12: -13.8774 REMARK 3 L13: 6.9315 L23: -4.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.2102 S12: 0.6602 S13: -0.5306 REMARK 3 S21: 0.1638 S22: -0.6106 S23: 0.5446 REMARK 3 S31: 0.5096 S32: 0.2369 S33: 0.4004 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6300 21.1637 19.8352 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0638 REMARK 3 T33: 0.0934 T12: 0.0033 REMARK 3 T13: 0.0081 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.9719 L22: 3.9629 REMARK 3 L33: 5.8350 L12: -1.2192 REMARK 3 L13: -0.0271 L23: -1.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0633 S13: 0.0150 REMARK 3 S21: 0.1792 S22: -0.1826 S23: -0.3111 REMARK 3 S31: 0.2405 S32: 0.3024 S33: 0.1696 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3289 28.7280 25.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1172 REMARK 3 T33: 0.1286 T12: 0.0522 REMARK 3 T13: 0.0407 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.3423 L22: 7.5327 REMARK 3 L33: 8.9023 L12: 2.2035 REMARK 3 L13: -3.0749 L23: -6.3616 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: -0.1862 S13: -0.0478 REMARK 3 S21: 0.0851 S22: 0.0953 S23: 0.2706 REMARK 3 S31: 0.3022 S32: 0.0789 S33: 0.0171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4DJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 126MM PHOSPHATE BUFFER, 63MM SODIUM REMARK 280 CITRATE, 24-29% AMMONIUM SULFATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.41300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.99750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.98350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.99750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.41300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.98350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 43 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M73 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DJO RELATED DB: PDB REMARK 900 RELATED ID: 4DJQ RELATED DB: PDB REMARK 900 RELATED ID: 4DJR RELATED DB: PDB DBREF 4DJP A 1 99 UNP Q90K99 Q90K99_9HIV1 1 99 DBREF 4DJP B 1 99 UNP Q90K99 Q90K99_9HIV1 1 99 SEQADV 4DJP LYS A 7 UNP Q90K99 GLN 7 ENGINEERED MUTATION SEQADV 4DJP LYS B 7 UNP Q90K99 GLN 7 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 A 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 B 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 B 99 GLY LYS TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE HET M73 A 200 39 HET PO4 B 101 5 HET PO4 B 102 5 HETNAM M73 METHYL (2S)-3-({[(2S,3R)-3-HYDROXY-4-{[(4- HETNAM 2 M73 METHOXYPHENYL)SULFONYL][(2S)-2-METHYLBUTYL]AMINO}-1- HETNAM 3 M73 PHENYLBUTAN-2-YL]CARBAMOYL}OXY)-2-METHYLPROPANOATE HETNAM PO4 PHOSPHATE ION FORMUL 3 M73 C28 H40 N2 O8 S FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *197(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLY B 86 THR B 91 1 6 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O GLN A 58 N LYS A 43 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 B 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 LEU A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N ARG A 14 SHEET 1 C 8 LYS B 43 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O GLN B 58 N LYS B 43 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O VAL B 75 N TYR B 59 SHEET 4 C 8 THR B 31 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 C 8 ASN B 83 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 LEU B 10 ILE B 15 -1 N ILE B 15 O GLN B 18 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N ARG B 14 SITE 1 AC1 19 ASP A 25 GLY A 27 ALA A 28 ASP A 29 SITE 2 AC1 19 ASP A 30 VAL A 32 ILE A 47 GLY A 48 SITE 3 AC1 19 GLY A 49 ILE A 50 PRO A 81 HOH A 301 SITE 4 AC1 19 ASP B 25 ALA B 28 ASP B 30 GLY B 48 SITE 5 AC1 19 GLY B 49 ILE B 50 ILE B 84 SITE 1 AC2 7 GLY A 68 HIS A 69 LYS A 70 HOH A 329 SITE 2 AC2 7 HOH A 385 PRO B 1 LYS B 55 SITE 1 AC3 9 ARG A 14 GLY A 16 GLY A 17 ARG B 14 SITE 2 AC3 9 GLY B 16 GLY B 17 HOH B 228 HOH B 254 SITE 3 AC3 9 HOH B 270 CRYST1 50.826 57.967 61.995 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016130 0.00000