HEADER RNA BINDING PROTEIN/IMMUNE SYSTEM 03-FEB-12 4DK6 TITLE STRUCTURE OF EDITOSOME PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE DOMAIN ANTIBODY VHH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA-EDITING COMPLEX PROTEIN MP81; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 12 ORGANISM_TAXID: 5691; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PRSF KEYWDS KREPA1, VHH, SINGLE DOMAIN ANTIBODY, PROTEIN BINDING, RNA BINDING KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.PARK,W.HOL REVDAT 6 13-SEP-23 4DK6 1 SEQADV REVDAT 5 15-NOV-17 4DK6 1 REMARK REVDAT 4 02-AUG-17 4DK6 1 SOURCE REMARK REVDAT 3 18-SEP-13 4DK6 1 SOURCE REMARK REVDAT 2 22-AUG-12 4DK6 1 JRNL REVDAT 1 04-JUL-12 4DK6 0 JRNL AUTH Y.J.PARK,T.BUDIARTO,M.WU,E.PARDON,J.STEYAERT,W.G.HOL JRNL TITL THE STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LARGEST JRNL TITL 2 EDITOSOME INTERACTION PROTEIN AND ITS ROLE IN PROMOTING RNA JRNL TITL 3 BINDING BY RNA-EDITING LIGASE L2. JRNL REF NUCLEIC ACIDS RES. V. 40 6966 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22561373 JRNL DOI 10.1093/NAR/GKS369 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 12183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.303 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.662 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3327 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4484 ; 0.909 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 4.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;32.067 ;23.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;14.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2507 -1.4549 12.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.1704 REMARK 3 T33: 0.0881 T12: 0.0164 REMARK 3 T13: -0.0138 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.4293 L22: 2.8601 REMARK 3 L33: 1.7483 L12: -1.0858 REMARK 3 L13: -0.9169 L23: 0.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: -0.0136 S13: 0.0132 REMARK 3 S21: 0.1477 S22: 0.0032 S23: -0.2806 REMARK 3 S31: -0.0890 S32: 0.3496 S33: 0.0607 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3724 -1.5907 6.9694 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1016 REMARK 3 T33: 0.0115 T12: -0.0267 REMARK 3 T13: -0.0165 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 8.6338 L22: 7.5534 REMARK 3 L33: 1.7020 L12: -5.7293 REMARK 3 L13: -1.1641 L23: 1.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.1164 S13: -0.0768 REMARK 3 S21: 0.0084 S22: -0.0741 S23: -0.0850 REMARK 3 S31: -0.0672 S32: 0.2309 S33: 0.0331 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8324 -4.1002 33.0657 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1855 REMARK 3 T33: 0.1204 T12: -0.0483 REMARK 3 T13: -0.0223 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.3810 L22: 5.4539 REMARK 3 L33: 2.3242 L12: 0.3492 REMARK 3 L13: 0.3739 L23: 1.0878 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.3756 S13: 0.0673 REMARK 3 S21: 0.5194 S22: -0.0133 S23: -0.0678 REMARK 3 S31: 0.0674 S32: -0.0060 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0326 -5.5182 34.2642 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.1719 REMARK 3 T33: 0.1295 T12: -0.0162 REMARK 3 T13: 0.0708 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.9385 L22: 7.9387 REMARK 3 L33: 4.3034 L12: 1.3138 REMARK 3 L13: 1.6059 L23: 4.5489 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.1732 S13: 0.1120 REMARK 3 S21: 0.4672 S22: -0.0145 S23: 0.0371 REMARK 3 S31: 0.1607 S32: 0.0464 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 627 C 718 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3736 -16.8349 17.1312 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.2223 REMARK 3 T33: 0.2265 T12: 0.0102 REMARK 3 T13: -0.0405 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.6646 L22: 9.1099 REMARK 3 L33: 2.7455 L12: 4.5545 REMARK 3 L13: -0.2801 L23: 1.9555 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.1891 S13: 0.2022 REMARK 3 S21: -0.0163 S22: 0.0651 S23: 1.0179 REMARK 3 S31: 0.3147 S32: -0.3043 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 719 C 761 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4798 -18.1607 12.5965 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.0633 REMARK 3 T33: 0.2131 T12: -0.0212 REMARK 3 T13: 0.0005 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 11.9298 L22: 2.6575 REMARK 3 L33: 2.8694 L12: -1.9023 REMARK 3 L13: -1.0585 L23: -1.3688 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.3662 S13: 0.6765 REMARK 3 S21: -0.3511 S22: -0.0957 S23: 0.2152 REMARK 3 S31: 0.0982 S32: -0.2141 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 627 D 650 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7657 5.1098 3.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.3107 REMARK 3 T33: 0.1370 T12: 0.0285 REMARK 3 T13: -0.0288 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 3.2948 L22: 1.8887 REMARK 3 L33: 5.4403 L12: 1.2561 REMARK 3 L13: -1.8171 L23: -1.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.1027 S12: 0.5203 S13: 0.1188 REMARK 3 S21: -0.2069 S22: -0.1208 S23: 0.1068 REMARK 3 S31: -0.1973 S32: -0.9167 S33: 0.2236 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 651 D 762 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1251 10.1245 5.4759 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.1924 REMARK 3 T33: 0.2228 T12: 0.0531 REMARK 3 T13: 0.0146 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.9678 L22: 4.3416 REMARK 3 L33: 14.3947 L12: 0.2668 REMARK 3 L13: -0.6693 L23: 2.2711 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.5639 S13: -0.1117 REMARK 3 S21: -0.2110 S22: -0.0198 S23: 0.3455 REMARK 3 S31: 0.3043 S32: -0.3547 S33: -0.0181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : 6M SPHERICAL GRATING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : M0 MIRROR: TOROIDAL SIC REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3K7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1M BIS REMARK 280 -TRIS, 25% W/V PEG 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.51300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.44100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.51300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.44100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 ARG C 624 REMARK 465 ALA C 625 REMARK 465 GLY C 626 REMARK 465 GLY C 692 REMARK 465 ALA C 693 REMARK 465 SER C 694 REMARK 465 GLY C 695 REMARK 465 ASP C 707 REMARK 465 ASN C 708 REMARK 465 PHE C 709 REMARK 465 PRO C 710 REMARK 465 ALA C 711 REMARK 465 SER C 712 REMARK 465 LEU C 713 REMARK 465 LEU C 714 REMARK 465 LYS C 715 REMARK 465 PRO C 753 REMARK 465 GLY C 762 REMARK 465 ARG D 624 REMARK 465 ALA D 625 REMARK 465 GLY D 626 REMARK 465 ASP D 656 REMARK 465 GLY D 657 REMARK 465 GLY D 692 REMARK 465 ALA D 693 REMARK 465 SER D 694 REMARK 465 GLY D 695 REMARK 465 GLU D 696 REMARK 465 GLY D 706 REMARK 465 ASP D 707 REMARK 465 ASN D 708 REMARK 465 PHE D 709 REMARK 465 PRO D 710 REMARK 465 ALA D 711 REMARK 465 SER D 712 REMARK 465 LEU D 713 REMARK 465 LEU D 714 REMARK 465 LYS D 715 REMARK 465 ASP D 716 REMARK 465 PRO D 753 REMARK 465 PRO D 754 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -95.76 -123.63 REMARK 500 TYR B 32 -88.22 -124.04 REMARK 500 TYR C 746 70.85 -118.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DK3 RELATED DB: PDB REMARK 900 RELATED ID: 4DKA RELATED DB: PDB DBREF 4DK6 A 1 133 PDB 4DK6 4DK6 1 133 DBREF 4DK6 B 1 133 PDB 4DK6 4DK6 1 133 DBREF 4DK6 C 624 657 UNP Q95W15 Q95W15_9TRYP 624 657 DBREF 4DK6 C 696 762 UNP Q95W15 Q95W15_9TRYP 696 762 DBREF 4DK6 D 624 657 UNP Q95W15 Q95W15_9TRYP 624 657 DBREF 4DK6 D 696 762 UNP Q95W15 Q95W15_9TRYP 696 762 SEQADV 4DK6 GLY C 692 UNP Q95W15 LINKER SEQADV 4DK6 ALA C 693 UNP Q95W15 LINKER SEQADV 4DK6 SER C 694 UNP Q95W15 LINKER SEQADV 4DK6 GLY C 695 UNP Q95W15 LINKER SEQADV 4DK6 GLY D 692 UNP Q95W15 LINKER SEQADV 4DK6 ALA D 693 UNP Q95W15 LINKER SEQADV 4DK6 SER D 694 UNP Q95W15 LINKER SEQADV 4DK6 GLY D 695 UNP Q95W15 LINKER SEQRES 1 A 133 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 133 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 133 ARG THR SER SER LEU TYR SER MET GLY TRP PHE ARG GLN SEQRES 4 A 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 A 133 ARG ASN GLY ALA ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 A 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 133 VAL GLU LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 133 ALA VAL TYR TYR CYS ALA ALA ASP ARG PHE PRO THR MET SEQRES 9 A 133 GLU VAL VAL THR ILE MET THR ASN GLU TYR ASP TYR TRP SEQRES 10 A 133 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 11 A 133 HIS HIS HIS SEQRES 1 B 133 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 133 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 133 ARG THR SER SER LEU TYR SER MET GLY TRP PHE ARG GLN SEQRES 4 B 133 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 B 133 ARG ASN GLY ALA ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 B 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 133 VAL GLU LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 133 ALA VAL TYR TYR CYS ALA ALA ASP ARG PHE PRO THR MET SEQRES 9 B 133 GLU VAL VAL THR ILE MET THR ASN GLU TYR ASP TYR TRP SEQRES 10 B 133 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS SEQRES 1 C 105 ARG ALA GLY SER ASN ALA LEU MET ILE GLY ARG ILE ALA SEQRES 2 C 105 ASP VAL GLN HIS GLY PHE LEU GLY ALA MET THR VAL THR SEQRES 3 C 105 GLN TYR VAL LEU GLU VAL ASP GLY GLY ALA SER GLY GLU SEQRES 4 C 105 LYS GLU PHE ILE VAL ILE ARG CYS MET GLY ASP ASN PHE SEQRES 5 C 105 PRO ALA SER LEU LEU LYS ASP GLN VAL LYS LEU GLY SER SEQRES 6 C 105 ARG VAL LEU VAL GLN GLY THR LEU ARG MET ASN ARG HIS SEQRES 7 C 105 VAL ASP ASP VAL SER LYS ARG LEU HIS ALA TYR PRO PHE SEQRES 8 C 105 ILE GLN VAL VAL PRO PRO LEU GLY TYR VAL LYS VAL VAL SEQRES 9 C 105 GLY SEQRES 1 D 105 ARG ALA GLY SER ASN ALA LEU MET ILE GLY ARG ILE ALA SEQRES 2 D 105 ASP VAL GLN HIS GLY PHE LEU GLY ALA MET THR VAL THR SEQRES 3 D 105 GLN TYR VAL LEU GLU VAL ASP GLY GLY ALA SER GLY GLU SEQRES 4 D 105 LYS GLU PHE ILE VAL ILE ARG CYS MET GLY ASP ASN PHE SEQRES 5 D 105 PRO ALA SER LEU LEU LYS ASP GLN VAL LYS LEU GLY SER SEQRES 6 D 105 ARG VAL LEU VAL GLN GLY THR LEU ARG MET ASN ARG HIS SEQRES 7 D 105 VAL ASP ASP VAL SER LYS ARG LEU HIS ALA TYR PRO PHE SEQRES 8 D 105 ILE GLN VAL VAL PRO PRO LEU GLY TYR VAL LYS VAL VAL SEQRES 9 D 105 GLY HELIX 1 1 THR A 28 LEU A 31 5 4 HELIX 2 2 ASP A 62 LYS A 65 5 4 HELIX 3 3 LYS A 87 THR A 91 5 5 HELIX 4 4 MET A 110 TYR A 114 5 5 HELIX 5 5 THR B 28 LEU B 31 5 4 HELIX 6 6 ASP B 62 LYS B 65 5 4 HELIX 7 7 LYS B 87 THR B 91 5 5 HELIX 8 8 MET B 110 TYR B 114 5 5 SHEET 1 A 4 VAL A 2 SER A 7 0 SHEET 2 A 4 LEU A 18 GLY A 26 -1 O SER A 21 N SER A 7 SHEET 3 A 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 B 6 GLY A 10 GLN A 13 0 SHEET 2 B 6 THR A 121 SER A 126 1 O THR A 124 N VAL A 12 SHEET 3 B 6 ALA A 92 ALA A 98 -1 N TYR A 94 O THR A 121 SHEET 4 B 6 MET A 34 GLN A 39 -1 N PHE A 37 O TYR A 95 SHEET 5 B 6 GLU A 46 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 B 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 C 4 GLY A 10 GLN A 13 0 SHEET 2 C 4 THR A 121 SER A 126 1 O THR A 124 N VAL A 12 SHEET 3 C 4 ALA A 92 ALA A 98 -1 N TYR A 94 O THR A 121 SHEET 4 C 4 TYR A 116 TRP A 117 -1 O TYR A 116 N ALA A 98 SHEET 1 D 6 VAL A 107 THR A 108 0 SHEET 2 D 6 GLN D 639 LEU D 643 -1 O PHE D 642 N VAL A 107 SHEET 3 D 6 MET D 646 GLU D 654 -1 O GLN D 650 N GLN D 639 SHEET 4 D 6 ASN D 628 ILE D 635 -1 N ARG D 634 O GLU D 654 SHEET 5 D 6 ARG D 723 ARG D 731 -1 O GLY D 728 N ALA D 629 SHEET 6 D 6 GLY D 756 VAL D 760 -1 O LYS D 759 N LEU D 725 SHEET 1 E 7 VAL A 107 THR A 108 0 SHEET 2 E 7 GLN D 639 LEU D 643 -1 O PHE D 642 N VAL A 107 SHEET 3 E 7 MET D 646 GLU D 654 -1 O GLN D 650 N GLN D 639 SHEET 4 E 7 PHE D 699 CYS D 704 -1 O ILE D 700 N LEU D 653 SHEET 5 E 7 PHE D 748 VAL D 752 1 O ILE D 749 N VAL D 701 SHEET 6 E 7 ARG D 723 ARG D 731 -1 N ARG D 731 O PHE D 748 SHEET 7 E 7 GLY D 756 VAL D 760 -1 O LYS D 759 N LEU D 725 SHEET 1 F 4 VAL B 2 SER B 7 0 SHEET 2 F 4 LEU B 18 GLY B 26 -1 O SER B 21 N SER B 7 SHEET 3 F 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 F 4 PHE B 68 ASP B 73 -1 N SER B 71 O GLU B 80 SHEET 1 G 6 LEU B 11 GLN B 13 0 SHEET 2 G 6 THR B 121 SER B 126 1 O THR B 124 N VAL B 12 SHEET 3 G 6 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 121 SHEET 4 G 6 MET B 34 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 G 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 G 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 H 4 LEU B 11 GLN B 13 0 SHEET 2 H 4 THR B 121 SER B 126 1 O THR B 124 N VAL B 12 SHEET 3 H 4 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 121 SHEET 4 H 4 TYR B 116 TRP B 117 -1 O TYR B 116 N ALA B 98 SHEET 1 I 7 VAL B 107 THR B 108 0 SHEET 2 I 7 ASN C 628 LEU C 643 -1 O PHE C 642 N VAL B 107 SHEET 3 I 7 MET C 646 VAL C 655 -1 O GLU C 654 N ARG C 634 SHEET 4 I 7 GLU C 698 MET C 705 -1 O ILE C 700 N LEU C 653 SHEET 5 I 7 PHE C 748 VAL C 751 1 O ILE C 749 N ARG C 703 SHEET 6 I 7 ARG C 723 ARG C 731 -1 N THR C 729 O GLN C 750 SHEET 7 I 7 TYR C 757 VAL C 760 -1 O LYS C 759 N LEU C 725 SHEET 1 J 4 VAL B 107 THR B 108 0 SHEET 2 J 4 ASN C 628 LEU C 643 -1 O PHE C 642 N VAL B 107 SHEET 3 J 4 ARG C 723 ARG C 731 -1 O VAL C 726 N MET C 631 SHEET 4 J 4 TYR C 757 VAL C 760 -1 O LYS C 759 N LEU C 725 SHEET 1 K 2 ARG C 734 VAL C 736 0 SHEET 2 K 2 LEU C 743 ALA C 745 -1 O HIS C 744 N HIS C 735 SHEET 1 L 2 ARG D 734 VAL D 736 0 SHEET 2 L 2 LEU D 743 ALA D 745 -1 O HIS D 744 N HIS D 735 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.04 CRYST1 173.026 40.882 61.281 90.00 92.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005779 0.000000 0.000257 0.00000 SCALE2 0.000000 0.024461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016334 0.00000