HEADER SIGNALING PROTEIN/ANTAGONIST 03-FEB-12 4DKL TITLE CRYSTAL STRUCTURE OF THE MU-OPIOID RECEPTOR BOUND TO A MORPHINAN TITLE 2 ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: MU-TYPE OPIOID RECEPTOR, LYSOZYME CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: MU-OPIOID RECEPTOR, M-OR-1, MOR-1, ENDOLYSIN, LYSIS PROTEIN, COMPND 6 MURAMIDASE; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: MOUSE, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 10090, 10665; SOURCE 5 GENE: MOR, OPRM, OPRM1, E; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS G-PROTEIN COUPLED RECEPTOR, 7 TRANSMEMBRANE RECEPTOR, SIGNALING KEYWDS 2 PROTEIN-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.MANGLIK,A.C.KRUSE,T.S.KOBILKA,F.S.THIAN,J.M.MATHIESEN,R.K.SUNAHARA, AUTHOR 2 L.PARDO,W.I.WEIS,B.K.KOBILKA,S.GRANIER REVDAT 6 27-NOV-24 4DKL 1 REMARK REVDAT 5 13-SEP-23 4DKL 1 REMARK SEQADV LINK REVDAT 4 26-JUL-17 4DKL 1 SOURCE REMARK REVDAT 3 08-JUN-16 4DKL 1 HETATM REVDAT 2 16-MAY-12 4DKL 1 JRNL REVDAT 1 21-MAR-12 4DKL 0 JRNL AUTH A.MANGLIK,A.C.KRUSE,T.S.KOBILKA,F.S.THIAN,J.M.MATHIESEN, JRNL AUTH 2 R.K.SUNAHARA,L.PARDO,W.I.WEIS,B.K.KOBILKA,S.GRANIER JRNL TITL CRYSTAL STRUCTURE OF THE {MU}-OPIOID RECEPTOR BOUND TO A JRNL TITL 2 MORPHINAN ANTAGONIST. JRNL REF NATURE V. 485 321 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22437502 JRNL DOI 10.1038/NATURE10954 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4897 - 5.3480 0.98 2636 138 0.2157 0.2695 REMARK 3 2 5.3480 - 4.2485 0.99 2608 136 0.2176 0.2445 REMARK 3 3 4.2485 - 3.7126 0.99 2605 139 0.2089 0.2381 REMARK 3 4 3.7126 - 3.3736 0.99 2607 136 0.2328 0.3052 REMARK 3 5 3.3736 - 3.1320 0.99 2603 136 0.2689 0.3232 REMARK 3 6 3.1320 - 2.9475 0.99 2614 139 0.2897 0.3318 REMARK 3 7 2.9475 - 2.8000 0.89 2355 122 0.3295 0.3621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 59.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.860 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 23.18860 REMARK 3 B22 (A**2) : -18.40260 REMARK 3 B33 (A**2) : -4.78600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.01740 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3727 REMARK 3 ANGLE : 0.928 5083 REMARK 3 CHIRALITY : 0.057 597 REMARK 3 PLANARITY : 0.004 599 REMARK 3 DIHEDRAL : 12.615 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 65:205) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8689 0.3792 -13.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.2398 REMARK 3 T33: 0.2363 T12: -0.0153 REMARK 3 T13: 0.0153 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.7115 L22: 3.6922 REMARK 3 L33: 3.3722 L12: -0.3363 REMARK 3 L13: -0.4263 L23: 0.6534 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.0232 S13: 0.0371 REMARK 3 S21: -0.1203 S22: 0.0560 S23: -0.3849 REMARK 3 S31: -0.0652 S32: 0.1381 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 206:258) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0211 -11.7763 -4.0518 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.3466 REMARK 3 T33: 0.3573 T12: 0.0221 REMARK 3 T13: 0.0069 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.7066 L22: 3.8359 REMARK 3 L33: 2.0678 L12: -2.8011 REMARK 3 L13: -1.0580 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: 0.0159 S13: -0.3047 REMARK 3 S21: -0.2615 S22: -0.0279 S23: -0.1864 REMARK 3 S31: 0.5301 S32: 0.2586 S33: 0.0020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 259:263 OR RESSEQ 1002:1070) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8891 28.0266 18.6757 REMARK 3 T TENSOR REMARK 3 T11: 1.2177 T22: 0.7202 REMARK 3 T33: 0.6193 T12: -0.1736 REMARK 3 T13: -0.0716 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.1500 L22: 5.8439 REMARK 3 L33: 3.7826 L12: -3.0203 REMARK 3 L13: 1.4112 L23: -1.6496 REMARK 3 S TENSOR REMARK 3 S11: 0.7940 S12: -1.0357 S13: -0.4600 REMARK 3 S21: 1.5080 S22: -0.1370 S23: 0.0513 REMARK 3 S31: 0.7145 S32: 0.5213 S33: -0.5714 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1071:1161 OR RESSEQ 270:272) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7205 46.5547 7.7946 REMARK 3 T TENSOR REMARK 3 T11: 0.4854 T22: 0.3347 REMARK 3 T33: 0.6684 T12: -0.0835 REMARK 3 T13: 0.0153 T23: -0.1141 REMARK 3 L TENSOR REMARK 3 L11: 3.8596 L22: 7.7572 REMARK 3 L33: 3.9845 L12: 1.7370 REMARK 3 L13: 0.4662 L23: 1.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.3453 S12: -0.0306 S13: -0.1611 REMARK 3 S21: 0.8023 S22: -0.5242 S23: 1.5999 REMARK 3 S31: -0.2786 S32: -0.2681 S33: 0.1869 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:352) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2067 1.4132 -15.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.3695 REMARK 3 T33: 0.2611 T12: -0.0148 REMARK 3 T13: -0.0760 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.8433 L22: 2.4943 REMARK 3 L33: 5.2252 L12: -0.2032 REMARK 3 L13: -1.1783 L23: 0.7253 REMARK 3 S TENSOR REMARK 3 S11: -0.4171 S12: 0.3121 S13: -0.0144 REMARK 3 S21: -1.2645 S22: 0.3506 S23: 0.1042 REMARK 3 S31: 0.1090 S32: -0.1192 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 25 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ODU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 300 MM LITHIUM REMARK 280 SULFATE, 7.5% DMSO, 30-38% PEG400 IN MONOOLEIN:CHOLESTEROL MIXED REMARK 280 IN A 10:1 RATIO, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.44100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 87.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.44100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 87.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -385.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.88200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 HIS A 54 REMARK 465 SER A 55 REMARK 465 LEU A 56 REMARK 465 CYS A 57 REMARK 465 PRO A 58 REMARK 465 GLN A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 PRO A 63 REMARK 465 SER A 64 REMARK 465 PRO A 353 REMARK 465 THR A 354 REMARK 465 SER A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 ILE A 358 REMARK 465 GLU A 359 REMARK 465 GLN A 360 REMARK 465 PRO A 361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 65 CG SD CE REMARK 470 THR A 67 OG1 CG2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1014 CG CD NE CZ NH1 NH2 REMARK 470 TYR A1024 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A1035 CG CD CE NZ REMARK 470 LYS A1048 CG CD CE NZ REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 GLU A1108 CG CD OE1 OE2 REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 76 O4 MPG A 616 2454 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 214 -173.33 -170.12 REMARK 500 CYS A 217 46.51 -107.42 REMARK 500 PHE A 241 -71.26 -135.63 REMARK 500 LEU A1033 -76.45 -119.81 REMARK 500 PHE A1114 42.60 -103.93 REMARK 500 THR A1142 77.52 -119.81 REMARK 500 PRO A 309 106.25 -59.41 REMARK 500 CYS A 351 -60.81 -91.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPG A 616 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BF0 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 618 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A IS AN INTERNAL FUSION OF LYSOZYME (RESIDUES 2-161 OF UNP REMARK 999 P00720) BETWEEN RESIDUES 52-263 AND RESIDUES 270-352 OF MU-TYPE REMARK 999 OPIOID RECEPTOR (UNP P42866). AN OFFSET OF 1000 HAS BEEN ADDED TO REMARK 999 LYSOZYME RESIDUE NUMBERS WITHIN THE COORDINATES TO DISTINGUISH THAT REMARK 999 PORTION OF CHAIN A. LYSOZYME RESIDUES ARE THEREFORE NUMBERED 1002- REMARK 999 1161. DBREF 4DKL A 52 263 UNP P42866 OPRM_MOUSE 52 263 DBREF 4DKL A 1002 1161 UNP P00720 LYS_BPT4 2 161 DBREF 4DKL A 270 360 UNP P42866 OPRM_MOUSE 270 360 SEQADV 4DKL ASN A 1020 UNP P00720 ASP 20 ENGINEERED MUTATION SEQADV 4DKL THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4DKL ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4DKL PRO A 361 UNP P42866 EXPRESSION TAG SEQRES 1 A 464 GLY SER HIS SER LEU CYS PRO GLN THR GLY SER PRO SER SEQRES 2 A 464 MET VAL THR ALA ILE THR ILE MET ALA LEU TYR SER ILE SEQRES 3 A 464 VAL CYS VAL VAL GLY LEU PHE GLY ASN PHE LEU VAL MET SEQRES 4 A 464 TYR VAL ILE VAL ARG TYR THR LYS MET LYS THR ALA THR SEQRES 5 A 464 ASN ILE TYR ILE PHE ASN LEU ALA LEU ALA ASP ALA LEU SEQRES 6 A 464 ALA THR SER THR LEU PRO PHE GLN SER VAL ASN TYR LEU SEQRES 7 A 464 MET GLY THR TRP PRO PHE GLY ASN ILE LEU CYS LYS ILE SEQRES 8 A 464 VAL ILE SER ILE ASP TYR TYR ASN MET PHE THR SER ILE SEQRES 9 A 464 PHE THR LEU CYS THR MET SER VAL ASP ARG TYR ILE ALA SEQRES 10 A 464 VAL CYS HIS PRO VAL LYS ALA LEU ASP PHE ARG THR PRO SEQRES 11 A 464 ARG ASN ALA LYS ILE VAL ASN VAL CYS ASN TRP ILE LEU SEQRES 12 A 464 SER SER ALA ILE GLY LEU PRO VAL MET PHE MET ALA THR SEQRES 13 A 464 THR LYS TYR ARG GLN GLY SER ILE ASP CYS THR LEU THR SEQRES 14 A 464 PHE SER HIS PRO THR TRP TYR TRP GLU ASN LEU LEU LYS SEQRES 15 A 464 ILE CYS VAL PHE ILE PHE ALA PHE ILE MET PRO VAL LEU SEQRES 16 A 464 ILE ILE THR VAL CYS TYR GLY LEU MET ILE LEU ARG LEU SEQRES 17 A 464 LYS SER VAL ARG ASN ILE PHE GLU MET LEU ARG ILE ASP SEQRES 18 A 464 GLU GLY LEU ARG LEU LYS ILE TYR LYS ASN THR GLU GLY SEQRES 19 A 464 TYR TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER SEQRES 20 A 464 PRO SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA SEQRES 21 A 464 ILE GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU SEQRES 22 A 464 ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL SEQRES 23 A 464 ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR SEQRES 24 A 464 ASP SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN SEQRES 25 A 464 MET VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE SEQRES 26 A 464 THR ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP SEQRES 27 A 464 GLU ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN SEQRES 28 A 464 GLN THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE SEQRES 29 A 464 ARG THR GLY THR TRP ASP ALA TYR GLU LYS ASP ARG ASN SEQRES 30 A 464 LEU ARG ARG ILE THR ARG MET VAL LEU VAL VAL VAL ALA SEQRES 31 A 464 VAL PHE ILE VAL CYS TRP THR PRO ILE HIS ILE TYR VAL SEQRES 32 A 464 ILE ILE LYS ALA LEU ILE THR ILE PRO GLU THR THR PHE SEQRES 33 A 464 GLN THR VAL SER TRP HIS PHE CYS ILE ALA LEU GLY TYR SEQRES 34 A 464 THR ASN SER CYS LEU ASN PRO VAL LEU TYR ALA PHE LEU SEQRES 35 A 464 ASP GLU ASN PHE LYS ARG CYS PHE ARG GLU PHE CYS ILE SEQRES 36 A 464 PRO THR SER SER THR ILE GLU GLN PRO HET BF0 A 601 33 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET SO4 A 612 5 HET SO4 A 613 5 HET CLR A 614 28 HET MPG A 615 25 HET MPG A 616 14 HET 1PE A 617 16 HET CL A 618 1 HETNAM BF0 METHYL 4-{[(5BETA,6ALPHA)-17-(CYCLOPROPYLMETHYL)-3,14- HETNAM 2 BF0 DIHYDROXY-4,5-EPOXYMORPHINAN-6-YL]AMINO}-4- HETNAM 3 BF0 OXOBUTANOATE HETNAM SO4 SULFATE ION HETNAM CLR CHOLESTEROL HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN BF0 BETA-FUNALTREXAMINE, BOUND FORM HETSYN 1PE PEG400 FORMUL 2 BF0 C25 H32 N2 O6 FORMUL 3 SO4 12(O4 S 2-) FORMUL 15 CLR C27 H46 O FORMUL 16 MPG 2(C21 H40 O4) FORMUL 18 1PE C10 H22 O6 FORMUL 19 CL CL 1- FORMUL 20 HOH *37(H2 O) HELIX 1 1 MET A 65 TYR A 96 1 32 HELIX 2 2 THR A 101 GLY A 131 1 31 HELIX 3 3 ASN A 137 HIS A 171 1 35 HELIX 4 4 HIS A 171 ARG A 179 1 9 HELIX 5 5 THR A 180 MET A 205 1 26 HELIX 6 6 PRO A 224 ALA A 240 1 17 HELIX 7 7 PHE A 241 LEU A 259 1 19 HELIX 8 8 ASN A 1002 GLY A 1012 1 11 HELIX 9 9 LEU A 1039 GLY A 1051 1 13 HELIX 10 10 THR A 1059 ARG A 1080 1 22 HELIX 11 11 LYS A 1083 SER A 1090 1 8 HELIX 12 12 ASP A 1092 GLY A 1107 1 16 HELIX 13 13 GLY A 1107 GLY A 1113 1 7 HELIX 14 14 PHE A 1114 GLN A 1123 1 10 HELIX 15 15 ARG A 1125 ALA A 1134 1 10 HELIX 16 16 SER A 1136 THR A 1142 1 7 HELIX 17 17 THR A 1142 GLY A 1156 1 15 HELIX 18 18 ASP A 272 ILE A 306 1 35 HELIX 19 19 THR A 311 ASP A 340 1 30 HELIX 20 20 ASP A 340 ILE A 352 1 13 SHEET 1 A 2 LYS A 209 ARG A 211 0 SHEET 2 A 2 SER A 214 ASP A 216 -1 O ASP A 216 N LYS A 209 SHEET 1 B 3 ARG A1014 LYS A1019 0 SHEET 2 B 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018 SHEET 3 B 3 HIS A1031 THR A1034 -1 O HIS A1031 N ILE A1027 SSBOND 1 CYS A 140 CYS A 217 1555 1555 2.03 LINK NZ LYS A 233 CAW BF0 A 601 1555 1555 1.51 CISPEP 1 HIS A 223 PRO A 224 0 -3.33 SITE 1 AC1 13 ASP A 147 TYR A 148 MET A 151 GLU A 229 SITE 2 AC1 13 LYS A 233 VAL A 236 TRP A 293 ILE A 296 SITE 3 AC1 13 VAL A 300 TRP A 318 ILE A 322 TYR A 326 SITE 4 AC1 13 HOH A 718 SITE 1 AC2 7 THR A 101 ALA A 102 THR A 103 ARG A 179 SITE 2 AC2 7 ILE A 278 HOH A 701 HOH A 712 SITE 1 AC3 4 ASN A 137 LYS A 141 THR A 207 ARG A1119 SITE 1 AC4 6 HIS A 171 PRO A 172 VAL A 173 LYS A 174 SITE 2 AC4 6 GLY A1012 LEU A1013 SITE 1 AC5 3 ARG A1014 LEU A1015 LYS A1016 SITE 1 AC6 4 HIS A 223 PRO A 224 THR A 225 TRP A 226 SITE 1 AC7 9 HIS A 223 HOH A 714 HOH A 722 GLY A1113 SITE 2 AC7 9 PHE A1114 THR A1115 ASN A1116 SER A1117 SITE 3 AC7 9 ASN A1132 SITE 1 AC8 2 HOH A 714 ARG A1137 SITE 1 AC9 3 PHE A 204 ARG A1119 GLN A1123 SITE 1 BC1 2 ARG A 277 ARG A 280 SITE 1 BC2 5 HIS A 171 ARG A 258 ARG A1008 LEU A1013 SITE 2 BC2 5 LYS A1060 SITE 1 BC3 3 THR A1142 ASN A1144 ARG A1145 SITE 1 BC4 3 ARG A 95 TYR A 96 THR A 97 SITE 1 BC5 5 TYR A 299 ILE A 302 ILE A 308 SER A 317 SITE 2 BC5 5 HOH A 731 SITE 1 BC6 5 PHE A 108 ASN A 109 LYS A 185 ASN A 188 SITE 2 BC6 5 TRP A 192 SITE 1 BC7 8 MET A 72 ALA A 73 TYR A 75 SER A 76 SITE 2 BC7 8 CYS A 79 LEU A 83 PRO A 122 SER A 125 SITE 1 BC8 5 TRP A 226 LYS A 303 LEU A 305 ILE A 306 SITE 2 BC8 5 THR A 307 SITE 1 BC9 2 SER A 261 GLU A 270 CRYST1 70.882 174.730 68.353 90.00 107.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014108 0.000000 0.004540 0.00000 SCALE2 0.000000 0.005723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015369 0.00000