HEADER SIGNALING PROTEIN/ANTAGONIST 03-FEB-12 4DKL
TITLE CRYSTAL STRUCTURE OF THE MU-OPIOID RECEPTOR BOUND TO A MORPHINAN
TITLE 2 ANTAGONIST
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MU-TYPE OPIOID RECEPTOR, LYSOZYME CHIMERA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SEE REMARK 999;
COMPND 5 SYNONYM: MU-OPIOID RECEPTOR, M-OR-1, MOR-1, ENDOLYSIN, LYSIS PROTEIN,
COMPND 6 MURAMIDASE;
COMPND 7 EC: 3.2.1.17;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_COMMON: MOUSE, BACTERIOPHAGE T4;
SOURCE 4 ORGANISM_TAXID: 10090, 10665;
SOURCE 5 GENE: MOR, OPRM, OPRM1, E;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC
KEYWDS G-PROTEIN COUPLED RECEPTOR, 7 TRANSMEMBRANE RECEPTOR, SIGNALING
KEYWDS 2 PROTEIN-ANTAGONIST COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.MANGLIK,A.C.KRUSE,T.S.KOBILKA,F.S.THIAN,J.M.MATHIESEN,R.K.SUNAHARA,
AUTHOR 2 L.PARDO,W.I.WEIS,B.K.KOBILKA,S.GRANIER
REVDAT 6 27-NOV-24 4DKL 1 REMARK
REVDAT 5 13-SEP-23 4DKL 1 REMARK SEQADV LINK
REVDAT 4 26-JUL-17 4DKL 1 SOURCE REMARK
REVDAT 3 08-JUN-16 4DKL 1 HETATM
REVDAT 2 16-MAY-12 4DKL 1 JRNL
REVDAT 1 21-MAR-12 4DKL 0
JRNL AUTH A.MANGLIK,A.C.KRUSE,T.S.KOBILKA,F.S.THIAN,J.M.MATHIESEN,
JRNL AUTH 2 R.K.SUNAHARA,L.PARDO,W.I.WEIS,B.K.KOBILKA,S.GRANIER
JRNL TITL CRYSTAL STRUCTURE OF THE {MU}-OPIOID RECEPTOR BOUND TO A
JRNL TITL 2 MORPHINAN ANTAGONIST.
JRNL REF NATURE V. 485 321 2012
JRNL REFN ISSN 0028-0836
JRNL PMID 22437502
JRNL DOI 10.1038/NATURE10954
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.49
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5
REMARK 3 NUMBER OF REFLECTIONS : 18974
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.235
REMARK 3 R VALUE (WORKING SET) : 0.233
REMARK 3 FREE R VALUE : 0.275
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 946
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 30.4897 - 5.3480 0.98 2636 138 0.2157 0.2695
REMARK 3 2 5.3480 - 4.2485 0.99 2608 136 0.2176 0.2445
REMARK 3 3 4.2485 - 3.7126 0.99 2605 139 0.2089 0.2381
REMARK 3 4 3.7126 - 3.3736 0.99 2607 136 0.2328 0.3052
REMARK 3 5 3.3736 - 3.1320 0.99 2603 136 0.2689 0.3232
REMARK 3 6 3.1320 - 2.9475 0.99 2614 139 0.2897 0.3318
REMARK 3 7 2.9475 - 2.8000 0.89 2355 122 0.3295 0.3621
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.32
REMARK 3 B_SOL : 59.89
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.860
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.730
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 23.18860
REMARK 3 B22 (A**2) : -18.40260
REMARK 3 B33 (A**2) : -4.78600
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 9.01740
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 3727
REMARK 3 ANGLE : 0.928 5083
REMARK 3 CHIRALITY : 0.057 597
REMARK 3 PLANARITY : 0.004 599
REMARK 3 DIHEDRAL : 12.615 1338
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 65:205)
REMARK 3 ORIGIN FOR THE GROUP (A): -18.8689 0.3792 -13.7282
REMARK 3 T TENSOR
REMARK 3 T11: 0.0920 T22: 0.2398
REMARK 3 T33: 0.2363 T12: -0.0153
REMARK 3 T13: 0.0153 T23: 0.0168
REMARK 3 L TENSOR
REMARK 3 L11: 1.7115 L22: 3.6922
REMARK 3 L33: 3.3722 L12: -0.3363
REMARK 3 L13: -0.4263 L23: 0.6534
REMARK 3 S TENSOR
REMARK 3 S11: -0.0406 S12: -0.0232 S13: 0.0371
REMARK 3 S21: -0.1203 S22: 0.0560 S23: -0.3849
REMARK 3 S31: -0.0652 S32: 0.1381 S33: 0.0003
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 206:258)
REMARK 3 ORIGIN FOR THE GROUP (A): -26.0211 -11.7763 -4.0518
REMARK 3 T TENSOR
REMARK 3 T11: 0.3679 T22: 0.3466
REMARK 3 T33: 0.3573 T12: 0.0221
REMARK 3 T13: 0.0069 T23: 0.0047
REMARK 3 L TENSOR
REMARK 3 L11: 2.7066 L22: 3.8359
REMARK 3 L33: 2.0678 L12: -2.8011
REMARK 3 L13: -1.0580 L23: -0.2111
REMARK 3 S TENSOR
REMARK 3 S11: -0.0666 S12: 0.0159 S13: -0.3047
REMARK 3 S21: -0.2615 S22: -0.0279 S23: -0.1864
REMARK 3 S31: 0.5301 S32: 0.2586 S33: 0.0020
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 259:263 OR RESSEQ 1002:1070)
REMARK 3 ORIGIN FOR THE GROUP (A): -17.8891 28.0266 18.6757
REMARK 3 T TENSOR
REMARK 3 T11: 1.2177 T22: 0.7202
REMARK 3 T33: 0.6193 T12: -0.1736
REMARK 3 T13: -0.0716 T23: -0.0091
REMARK 3 L TENSOR
REMARK 3 L11: 5.1500 L22: 5.8439
REMARK 3 L33: 3.7826 L12: -3.0203
REMARK 3 L13: 1.4112 L23: -1.6496
REMARK 3 S TENSOR
REMARK 3 S11: 0.7940 S12: -1.0357 S13: -0.4600
REMARK 3 S21: 1.5080 S22: -0.1370 S23: 0.0513
REMARK 3 S31: 0.7145 S32: 0.5213 S33: -0.5714
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1071:1161 OR RESSEQ 270:272)
REMARK 3 ORIGIN FOR THE GROUP (A): -23.7205 46.5547 7.7946
REMARK 3 T TENSOR
REMARK 3 T11: 0.4854 T22: 0.3347
REMARK 3 T33: 0.6684 T12: -0.0835
REMARK 3 T13: 0.0153 T23: -0.1141
REMARK 3 L TENSOR
REMARK 3 L11: 3.8596 L22: 7.7572
REMARK 3 L33: 3.9845 L12: 1.7370
REMARK 3 L13: 0.4662 L23: 1.0619
REMARK 3 S TENSOR
REMARK 3 S11: 0.3453 S12: -0.0306 S13: -0.1611
REMARK 3 S21: 0.8023 S22: -0.5242 S23: 1.5999
REMARK 3 S31: -0.2786 S32: -0.2681 S33: 0.1869
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:352)
REMARK 3 ORIGIN FOR THE GROUP (A): -31.2067 1.4132 -15.7628
REMARK 3 T TENSOR
REMARK 3 T11: 0.2911 T22: 0.3695
REMARK 3 T33: 0.2611 T12: -0.0148
REMARK 3 T13: -0.0760 T23: 0.0252
REMARK 3 L TENSOR
REMARK 3 L11: 2.8433 L22: 2.4943
REMARK 3 L33: 5.2252 L12: -0.2032
REMARK 3 L13: -1.1783 L23: 0.7253
REMARK 3 S TENSOR
REMARK 3 S11: -0.4171 S12: 0.3121 S13: -0.0144
REMARK 3 S21: -1.2645 S22: 0.3506 S23: 0.1042
REMARK 3 S31: 0.1090 S32: -0.1192 S33: -0.0003
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4DKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12.
REMARK 100 THE DEPOSITION ID IS D_1000070446.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11
REMARK 200 TEMPERATURE (KELVIN) : 78
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 25
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.033
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED
REMARK 200 SI(111)
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19145
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 30.500
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 200 DATA REDUNDANCY : 5.800
REMARK 200 R MERGE (I) : 0.14400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3
REMARK 200 DATA REDUNDANCY IN SHELL : 5.50
REMARK 200 R MERGE FOR SHELL (I) : 0.78800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3ODU
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 67.78
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 300 MM LITHIUM
REMARK 280 SULFATE, 7.5% DMSO, 30-38% PEG400 IN MONOOLEIN:CHOLESTEROL MIXED
REMARK 280 IN A 10:1 RATIO, LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.44100
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 87.36500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.44100
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 87.36500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 11980 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 42210 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -385.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.88200
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 52
REMARK 465 SER A 53
REMARK 465 HIS A 54
REMARK 465 SER A 55
REMARK 465 LEU A 56
REMARK 465 CYS A 57
REMARK 465 PRO A 58
REMARK 465 GLN A 59
REMARK 465 THR A 60
REMARK 465 GLY A 61
REMARK 465 SER A 62
REMARK 465 PRO A 63
REMARK 465 SER A 64
REMARK 465 PRO A 353
REMARK 465 THR A 354
REMARK 465 SER A 355
REMARK 465 SER A 356
REMARK 465 THR A 357
REMARK 465 ILE A 358
REMARK 465 GLU A 359
REMARK 465 GLN A 360
REMARK 465 PRO A 361
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 MET A 65 CG SD CE
REMARK 470 THR A 67 OG1 CG2
REMARK 470 LYS A 260 CG CD CE NZ
REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2
REMARK 470 ARG A1014 CG CD NE CZ NH1 NH2
REMARK 470 TYR A1024 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LYS A1035 CG CD CE NZ
REMARK 470 LYS A1048 CG CD CE NZ
REMARK 470 LYS A1085 CG CD CE NZ
REMARK 470 GLU A1108 CG CD OE1 OE2
REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2
REMARK 470 ASN A 274 CG OD1 ND2
REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 349 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OG SER A 76 O4 MPG A 616 2454 1.94
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 214 -173.33 -170.12
REMARK 500 CYS A 217 46.51 -107.42
REMARK 500 PHE A 241 -71.26 -135.63
REMARK 500 LEU A1033 -76.45 -119.81
REMARK 500 PHE A1114 42.60 -103.93
REMARK 500 THR A1142 77.52 -119.81
REMARK 500 PRO A 309 106.25 -59.41
REMARK 500 CYS A 351 -60.81 -91.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 MPG A 616
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BF0 A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 611
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 612
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 613
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 614
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 615
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPG A 616
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 617
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 618
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 CHAIN A IS AN INTERNAL FUSION OF LYSOZYME (RESIDUES 2-161 OF UNP
REMARK 999 P00720) BETWEEN RESIDUES 52-263 AND RESIDUES 270-352 OF MU-TYPE
REMARK 999 OPIOID RECEPTOR (UNP P42866). AN OFFSET OF 1000 HAS BEEN ADDED TO
REMARK 999 LYSOZYME RESIDUE NUMBERS WITHIN THE COORDINATES TO DISTINGUISH THAT
REMARK 999 PORTION OF CHAIN A. LYSOZYME RESIDUES ARE THEREFORE NUMBERED 1002-
REMARK 999 1161.
DBREF 4DKL A 52 263 UNP P42866 OPRM_MOUSE 52 263
DBREF 4DKL A 1002 1161 UNP P00720 LYS_BPT4 2 161
DBREF 4DKL A 270 360 UNP P42866 OPRM_MOUSE 270 360
SEQADV 4DKL ASN A 1020 UNP P00720 ASP 20 ENGINEERED MUTATION
SEQADV 4DKL THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION
SEQADV 4DKL ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION
SEQADV 4DKL PRO A 361 UNP P42866 EXPRESSION TAG
SEQRES 1 A 464 GLY SER HIS SER LEU CYS PRO GLN THR GLY SER PRO SER
SEQRES 2 A 464 MET VAL THR ALA ILE THR ILE MET ALA LEU TYR SER ILE
SEQRES 3 A 464 VAL CYS VAL VAL GLY LEU PHE GLY ASN PHE LEU VAL MET
SEQRES 4 A 464 TYR VAL ILE VAL ARG TYR THR LYS MET LYS THR ALA THR
SEQRES 5 A 464 ASN ILE TYR ILE PHE ASN LEU ALA LEU ALA ASP ALA LEU
SEQRES 6 A 464 ALA THR SER THR LEU PRO PHE GLN SER VAL ASN TYR LEU
SEQRES 7 A 464 MET GLY THR TRP PRO PHE GLY ASN ILE LEU CYS LYS ILE
SEQRES 8 A 464 VAL ILE SER ILE ASP TYR TYR ASN MET PHE THR SER ILE
SEQRES 9 A 464 PHE THR LEU CYS THR MET SER VAL ASP ARG TYR ILE ALA
SEQRES 10 A 464 VAL CYS HIS PRO VAL LYS ALA LEU ASP PHE ARG THR PRO
SEQRES 11 A 464 ARG ASN ALA LYS ILE VAL ASN VAL CYS ASN TRP ILE LEU
SEQRES 12 A 464 SER SER ALA ILE GLY LEU PRO VAL MET PHE MET ALA THR
SEQRES 13 A 464 THR LYS TYR ARG GLN GLY SER ILE ASP CYS THR LEU THR
SEQRES 14 A 464 PHE SER HIS PRO THR TRP TYR TRP GLU ASN LEU LEU LYS
SEQRES 15 A 464 ILE CYS VAL PHE ILE PHE ALA PHE ILE MET PRO VAL LEU
SEQRES 16 A 464 ILE ILE THR VAL CYS TYR GLY LEU MET ILE LEU ARG LEU
SEQRES 17 A 464 LYS SER VAL ARG ASN ILE PHE GLU MET LEU ARG ILE ASP
SEQRES 18 A 464 GLU GLY LEU ARG LEU LYS ILE TYR LYS ASN THR GLU GLY
SEQRES 19 A 464 TYR TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER
SEQRES 20 A 464 PRO SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA
SEQRES 21 A 464 ILE GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU
SEQRES 22 A 464 ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL
SEQRES 23 A 464 ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR
SEQRES 24 A 464 ASP SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN
SEQRES 25 A 464 MET VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE
SEQRES 26 A 464 THR ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP
SEQRES 27 A 464 GLU ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN
SEQRES 28 A 464 GLN THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE
SEQRES 29 A 464 ARG THR GLY THR TRP ASP ALA TYR GLU LYS ASP ARG ASN
SEQRES 30 A 464 LEU ARG ARG ILE THR ARG MET VAL LEU VAL VAL VAL ALA
SEQRES 31 A 464 VAL PHE ILE VAL CYS TRP THR PRO ILE HIS ILE TYR VAL
SEQRES 32 A 464 ILE ILE LYS ALA LEU ILE THR ILE PRO GLU THR THR PHE
SEQRES 33 A 464 GLN THR VAL SER TRP HIS PHE CYS ILE ALA LEU GLY TYR
SEQRES 34 A 464 THR ASN SER CYS LEU ASN PRO VAL LEU TYR ALA PHE LEU
SEQRES 35 A 464 ASP GLU ASN PHE LYS ARG CYS PHE ARG GLU PHE CYS ILE
SEQRES 36 A 464 PRO THR SER SER THR ILE GLU GLN PRO
HET BF0 A 601 33
HET SO4 A 602 5
HET SO4 A 603 5
HET SO4 A 604 5
HET SO4 A 605 5
HET SO4 A 606 5
HET SO4 A 607 5
HET SO4 A 608 5
HET SO4 A 609 5
HET SO4 A 610 5
HET SO4 A 611 5
HET SO4 A 612 5
HET SO4 A 613 5
HET CLR A 614 28
HET MPG A 615 25
HET MPG A 616 14
HET 1PE A 617 16
HET CL A 618 1
HETNAM BF0 METHYL 4-{[(5BETA,6ALPHA)-17-(CYCLOPROPYLMETHYL)-3,14-
HETNAM 2 BF0 DIHYDROXY-4,5-EPOXYMORPHINAN-6-YL]AMINO}-4-
HETNAM 3 BF0 OXOBUTANOATE
HETNAM SO4 SULFATE ION
HETNAM CLR CHOLESTEROL
HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE
HETNAM 1PE PENTAETHYLENE GLYCOL
HETNAM CL CHLORIDE ION
HETSYN BF0 BETA-FUNALTREXAMINE, BOUND FORM
HETSYN 1PE PEG400
FORMUL 2 BF0 C25 H32 N2 O6
FORMUL 3 SO4 12(O4 S 2-)
FORMUL 15 CLR C27 H46 O
FORMUL 16 MPG 2(C21 H40 O4)
FORMUL 18 1PE C10 H22 O6
FORMUL 19 CL CL 1-
FORMUL 20 HOH *37(H2 O)
HELIX 1 1 MET A 65 TYR A 96 1 32
HELIX 2 2 THR A 101 GLY A 131 1 31
HELIX 3 3 ASN A 137 HIS A 171 1 35
HELIX 4 4 HIS A 171 ARG A 179 1 9
HELIX 5 5 THR A 180 MET A 205 1 26
HELIX 6 6 PRO A 224 ALA A 240 1 17
HELIX 7 7 PHE A 241 LEU A 259 1 19
HELIX 8 8 ASN A 1002 GLY A 1012 1 11
HELIX 9 9 LEU A 1039 GLY A 1051 1 13
HELIX 10 10 THR A 1059 ARG A 1080 1 22
HELIX 11 11 LYS A 1083 SER A 1090 1 8
HELIX 12 12 ASP A 1092 GLY A 1107 1 16
HELIX 13 13 GLY A 1107 GLY A 1113 1 7
HELIX 14 14 PHE A 1114 GLN A 1123 1 10
HELIX 15 15 ARG A 1125 ALA A 1134 1 10
HELIX 16 16 SER A 1136 THR A 1142 1 7
HELIX 17 17 THR A 1142 GLY A 1156 1 15
HELIX 18 18 ASP A 272 ILE A 306 1 35
HELIX 19 19 THR A 311 ASP A 340 1 30
HELIX 20 20 ASP A 340 ILE A 352 1 13
SHEET 1 A 2 LYS A 209 ARG A 211 0
SHEET 2 A 2 SER A 214 ASP A 216 -1 O ASP A 216 N LYS A 209
SHEET 1 B 3 ARG A1014 LYS A1019 0
SHEET 2 B 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018
SHEET 3 B 3 HIS A1031 THR A1034 -1 O HIS A1031 N ILE A1027
SSBOND 1 CYS A 140 CYS A 217 1555 1555 2.03
LINK NZ LYS A 233 CAW BF0 A 601 1555 1555 1.51
CISPEP 1 HIS A 223 PRO A 224 0 -3.33
SITE 1 AC1 13 ASP A 147 TYR A 148 MET A 151 GLU A 229
SITE 2 AC1 13 LYS A 233 VAL A 236 TRP A 293 ILE A 296
SITE 3 AC1 13 VAL A 300 TRP A 318 ILE A 322 TYR A 326
SITE 4 AC1 13 HOH A 718
SITE 1 AC2 7 THR A 101 ALA A 102 THR A 103 ARG A 179
SITE 2 AC2 7 ILE A 278 HOH A 701 HOH A 712
SITE 1 AC3 4 ASN A 137 LYS A 141 THR A 207 ARG A1119
SITE 1 AC4 6 HIS A 171 PRO A 172 VAL A 173 LYS A 174
SITE 2 AC4 6 GLY A1012 LEU A1013
SITE 1 AC5 3 ARG A1014 LEU A1015 LYS A1016
SITE 1 AC6 4 HIS A 223 PRO A 224 THR A 225 TRP A 226
SITE 1 AC7 9 HIS A 223 HOH A 714 HOH A 722 GLY A1113
SITE 2 AC7 9 PHE A1114 THR A1115 ASN A1116 SER A1117
SITE 3 AC7 9 ASN A1132
SITE 1 AC8 2 HOH A 714 ARG A1137
SITE 1 AC9 3 PHE A 204 ARG A1119 GLN A1123
SITE 1 BC1 2 ARG A 277 ARG A 280
SITE 1 BC2 5 HIS A 171 ARG A 258 ARG A1008 LEU A1013
SITE 2 BC2 5 LYS A1060
SITE 1 BC3 3 THR A1142 ASN A1144 ARG A1145
SITE 1 BC4 3 ARG A 95 TYR A 96 THR A 97
SITE 1 BC5 5 TYR A 299 ILE A 302 ILE A 308 SER A 317
SITE 2 BC5 5 HOH A 731
SITE 1 BC6 5 PHE A 108 ASN A 109 LYS A 185 ASN A 188
SITE 2 BC6 5 TRP A 192
SITE 1 BC7 8 MET A 72 ALA A 73 TYR A 75 SER A 76
SITE 2 BC7 8 CYS A 79 LEU A 83 PRO A 122 SER A 125
SITE 1 BC8 5 TRP A 226 LYS A 303 LEU A 305 ILE A 306
SITE 2 BC8 5 THR A 307
SITE 1 BC9 2 SER A 261 GLU A 270
CRYST1 70.882 174.730 68.353 90.00 107.84 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014108 0.000000 0.004540 0.00000
SCALE2 0.000000 0.005723 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015369 0.00000