HEADER VIRAL PROTEIN/INHIBITOR 03-FEB-12 4DKQ TITLE CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN COMPLEX TITLE 2 WITH DMJ-I-228 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11686; SOURCE 5 STRAIN: CLADE A/E 93TH057; SOURCE 6 GENE: HIV-1 ENV; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1 GP120, CLADE A/E, CD4 MIMIC, DMJ-I-228, VIRAL PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,J.M.LALONDE,D.M.JONES,A.W.SUN,J.R.COURTER,T.SOETA, AUTHOR 2 T.KOBAYASHI,A.M.PRINCIOTTO,X.WU,J.MASCOLA,A.SCHON,E.FREIRE, AUTHOR 3 J.SODROSKI,N.MADANI,A.B.SMITH III,P.D.KWONG REVDAT 8 27-DEC-23 4DKQ 1 REMARK LINK REVDAT 7 13-SEP-23 4DKQ 1 REMARK REVDAT 6 19-MAY-21 4DKQ 1 SOURCE HETSYN REVDAT 5 29-JUL-20 4DKQ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 17-JUL-19 4DKQ 1 REMARK LINK REVDAT 3 20-JUN-12 4DKQ 1 JRNL REVDAT 2 09-MAY-12 4DKQ 1 SOURCE REVDAT 1 02-MAY-12 4DKQ 0 JRNL AUTH J.M.LALONDE,Y.D.KWON,D.M.JONES,A.W.SUN,J.R.COURTER,T.SOETA, JRNL AUTH 2 T.KOBAYASHI,A.M.PRINCIOTTO,X.WU,A.SCHON,E.FREIRE,P.D.KWONG, JRNL AUTH 3 J.R.MASCOLA,J.SODROSKI,N.MADANI,A.B.SMITH JRNL TITL STRUCTURE-BASED DESIGN, SYNTHESIS, AND CHARACTERIZATION OF JRNL TITL 2 DUAL HOTSPOT SMALL-MOLECULE HIV-1 ENTRY INHIBITORS. JRNL REF J.MED.CHEM. V. 55 4382 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22497421 JRNL DOI 10.1021/JM300265J REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 29830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0188 - 1.9492 0.91 0 1470 0.1964 0.2118 REMARK 3 2 1.9492 - 1.8882 0.72 0 108 0.2379 0.2622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 29.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.72610 REMARK 3 B22 (A**2) : -4.53380 REMARK 3 B33 (A**2) : -1.19230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : 0.869 NULL REMARK 3 CHIRALITY : 0.054 NULL REMARK 3 PLANARITY : 0.012 NULL REMARK 3 DIHEDRAL : 12.849 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 44:89 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0644 7.5518 18.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.2329 REMARK 3 T33: 0.1787 T12: 0.0722 REMARK 3 T13: -0.0203 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.9575 L22: 1.1602 REMARK 3 L33: 0.3802 L12: -0.2036 REMARK 3 L13: -0.1177 L23: 0.3933 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: -0.0107 S13: 0.2193 REMARK 3 S21: 0.2076 S22: 0.0215 S23: 0.0804 REMARK 3 S31: -0.4875 S32: -0.3309 S33: 0.0806 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 90:254 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6447 -1.6295 14.0142 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1551 REMARK 3 T33: 0.1469 T12: 0.0046 REMARK 3 T13: 0.0081 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.0360 L22: 1.6109 REMARK 3 L33: 1.4444 L12: -0.4588 REMARK 3 L13: 0.5459 L23: -0.3381 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.0823 S13: 0.0379 REMARK 3 S21: 0.0450 S22: 0.0425 S23: -0.1200 REMARK 3 S31: -0.1537 S32: -0.0292 S33: 0.0386 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 255:474 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7889 -21.2530 15.1461 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1421 REMARK 3 T33: 0.2197 T12: -0.0186 REMARK 3 T13: 0.0166 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.7842 L22: 1.1933 REMARK 3 L33: 1.2209 L12: -0.4603 REMARK 3 L13: 0.7329 L23: -0.0690 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.0596 S13: -0.2307 REMARK 3 S21: 0.0292 S22: 0.0746 S23: 0.2267 REMARK 3 S31: 0.2208 S32: -0.1408 S33: -0.0700 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESI 475:492 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5335 0.3729 8.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.1927 REMARK 3 T33: 0.1526 T12: 0.0305 REMARK 3 T13: 0.0033 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.9118 L22: 0.8116 REMARK 3 L33: 1.0621 L12: -0.4622 REMARK 3 L13: 0.3243 L23: 0.1662 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.2883 S13: -0.0209 REMARK 3 S21: -0.0541 S22: -0.1382 S23: 0.1287 REMARK 3 S31: -0.2077 S32: -0.0741 S33: 0.0984 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.888 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 34.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : 0.37900 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3TGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 5% ISO-PROPANOL, 0.1M REMARK 280 HEPES 7.5 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.87050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.62750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.62750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.87050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 THR A 406 REMARK 465 MET A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 CYS A 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 119 SG CYS A 205 1.52 REMARK 500 ND2 ASN A 355 O5 NAG A 608 1.90 REMARK 500 O HOH A 871 O HOH A 877 2.01 REMARK 500 O HOH A 865 O HOH A 868 2.04 REMARK 500 NZ LYS A 231 OE1 GLU A 267 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 211 105.66 -167.86 REMARK 500 GLN A 258 -58.59 70.15 REMARK 500 GLU A 268 -101.01 -126.15 REMARK 500 ASN A 276 93.66 -165.43 REMARK 500 PHE A 391 60.85 -108.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DKO RELATED DB: PDB REMARK 900 RELATED ID: 4DKP RELATED DB: PDB REMARK 900 RELATED ID: 4DKR RELATED DB: PDB DBREF 4DKQ A 44 492 PDB 4DKQ 4DKQ 44 492 SEQRES 1 A 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 A 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 A 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 A 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 A 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 A 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 A 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 A 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 A 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 A 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 A 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 A 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 A 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 A 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 A 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 A 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 A 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 A 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 A 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 A 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 A 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 A 353 ILE GLU MODRES 4DKQ ASN A 295 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 276 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 355 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 448 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 392 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 241 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 386 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 334 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 234 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 262 ASN GLYCOSYLATION SITE MODRES 4DKQ ASN A 289 ASN GLYCOSYLATION SITE HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET NAG A 606 14 HET NAG A 607 14 HET NAG A 608 14 HET NAG A 609 14 HET NAG A 610 14 HET NAG A 611 14 HET EPE A 612 15 HET 0LK A 613 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM 0LK N-[(1S,2S)-2-CARBAMIMIDAMIDO-2,3-DIHYDRO-1H-INDEN-1- HETNAM 2 0LK YL]-N'-(4-CHLORO-3-FLUOROPHENYL)ETHANEDIAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EPE HEPES FORMUL 2 NAG 11(C8 H15 N O6) FORMUL 13 EPE C8 H18 N2 O4 S FORMUL 14 0LK C18 H17 CL F N5 O2 FORMUL 15 HOH *198(H2 O) HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 GLY A 335 PHE A 353 1 19 HELIX 4 4 ASP A 368 MET A 373 1 6 HELIX 5 5 THR A 387 ILE A 396 5 10 HELIX 6 6 ILE A 475 TYR A 484 1 10 SHEET 1 A 5 TRP A 45 ASP A 47 0 SHEET 2 A 5 TYR A 486 ILE A 491 -1 O GLN A 490 N LYS A 46 SHEET 3 A 5 TYR A 223 CYS A 228 -1 N LEU A 226 O LYS A 487 SHEET 4 A 5 VAL A 242 VAL A 245 -1 O SER A 243 N LYS A 227 SHEET 5 A 5 GLU A 83 HIS A 85 -1 N ILE A 84 O SER A 244 SHEET 1 B 3 VAL A 75 PRO A 76 0 SHEET 2 B 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 B 3 HIS A 216 CYS A 218 -1 O HIS A 216 N ALA A 55 SHEET 1 C 2 GLU A 91 ASN A 94 0 SHEET 2 C 2 THR A 236 CYS A 239 -1 O GLY A 237 N PHE A 93 SHEET 1 D 4 SER A 199 LYS A 202 0 SHEET 2 D 4 VAL A 120 THR A 123 -1 N LYS A 121 O ILE A 201 SHEET 3 D 4 GLN A 432 MET A 434 -1 O MET A 434 N VAL A 120 SHEET 4 D 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 E 5 LEU A 259 LEU A 261 0 SHEET 2 E 5 ILE A 443 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 E 5 ILE A 284 ARG A 298 -1 N VAL A 286 O ILE A 452 SHEET 4 E 5 ASN A 465 PRO A 470 0 SHEET 5 E 5 THR A 358 PHE A 361 1 N ILE A 360 O PHE A 468 SHEET 1 F 7 ILE A 271 ARG A 273 0 SHEET 2 F 7 ILE A 284 ARG A 298 -1 O HIS A 287 N ILE A 271 SHEET 3 F 7 ILE A 443 ARG A 456 -1 O ILE A 452 N VAL A 286 SHEET 4 F 7 LYS A 328 ASN A 334 0 SHEET 5 F 7 THR A 413 LYS A 421 -1 O ILE A 414 N ILE A 333 SHEET 6 F 7 GLU A 381 CYS A 385 -1 N PHE A 382 O LYS A 421 SHEET 7 F 7 HIS A 374 CYS A 378 -1 N HIS A 374 O CYS A 385 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.04 SSBOND 2 CYS A 218 CYS A 247 1555 1555 2.04 SSBOND 3 CYS A 228 CYS A 239 1555 1555 2.05 SSBOND 4 CYS A 296 CYS A 331 1555 1555 1.88 SSBOND 5 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 6 CYS A 385 CYS A 418 1555 1555 2.04 LINK ND2 ASN A 234 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 604 1555 1555 1.37 LINK ND2 ASN A 289 C1 NAG A 605 1555 1555 1.45 LINK ND2 ASN A 295 C1 NAG A 606 1555 1555 1.30 LINK ND2 ASN A 334 C1 NAG A 607 1555 1555 1.44 LINK ND2 ASN A 355 C1 NAG A 608 1555 1555 1.41 LINK ND2 ASN A 386 C1 NAG A 609 1555 1555 1.44 LINK ND2 ASN A 392 C1 NAG A 610 1555 1555 1.44 LINK ND2 ASN A 448 C1 NAG A 611 1555 1555 1.44 CRYST1 63.741 67.523 89.255 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011204 0.00000