HEADER HYDROLASE 06-FEB-12 4DLF TITLE CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM BURKHOLDERIA TITLE 2 MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, SPACE GROUP P3221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE AMIDOHYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS; SOURCE 3 ORGANISM_TAXID: 395019; SOURCE 4 STRAIN: ATCC 17616; SOURCE 5 GENE: BMUL_3602, BMULJ_04915; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS AMIDOHYDROLASE, ENZYME FUNCTION INITIATIVE, EFI, COG3618, STRUCTURAL KEYWDS 2 GENOMICS, TIM-BARREL FOLD, PUTATIVE LACTONASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,R.D.SEIDEL,B.HILLERICH,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,N.F.AL OBAIDI, AUTHOR 3 W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,F.M.RAUSHEL,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 3 13-SEP-23 4DLF 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4DLF 1 JRNL REVDAT 1 29-FEB-12 4DLF 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,R.D.SEIDEL,B.HILLERICH, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 N.F.AL OBAIDI,W.D.ZENCHECK,H.J.IMKER,J.A.GERLT,F.M.RAUSHEL, JRNL AUTH 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE (COG3618) FROM JRNL TITL 2 BURKHOLDERIA MULTIVORANS (TARGET EFI-500235) WITH BOUND ZN, JRNL TITL 3 SPACE GROUP P3221 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.9 REMARK 3 NUMBER OF REFLECTIONS : 28155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3932 - 4.1461 0.98 3588 187 0.1669 0.1936 REMARK 3 2 4.1461 - 3.2914 1.00 3463 195 0.1638 0.2012 REMARK 3 3 3.2914 - 2.8755 1.00 3433 185 0.1919 0.2273 REMARK 3 4 2.8755 - 2.6127 1.00 3404 202 0.2041 0.2852 REMARK 3 5 2.6127 - 2.4254 1.00 3401 186 0.2145 0.2472 REMARK 3 6 2.4254 - 2.2825 1.00 3401 187 0.2307 0.2533 REMARK 3 7 2.2825 - 2.1682 0.93 3172 167 0.2463 0.2722 REMARK 3 8 2.1682 - 2.0738 0.48 1651 73 0.2718 0.2761 REMARK 3 9 2.0738 - 1.9940 0.25 864 30 0.2665 0.3321 REMARK 3 10 1.9940 - 1.9252 0.10 357 9 0.3451 0.3515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 28.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29880 REMARK 3 B22 (A**2) : -0.29880 REMARK 3 B33 (A**2) : 0.59770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2403 REMARK 3 ANGLE : 1.082 3275 REMARK 3 CHIRALITY : 0.072 341 REMARK 3 PLANARITY : 0.005 432 REMARK 3 DIHEDRAL : 13.164 856 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 3:59) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6478 26.2266 148.7378 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.1724 REMARK 3 T33: 0.1278 T12: -0.1717 REMARK 3 T13: 0.0406 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.3871 L22: 1.9800 REMARK 3 L33: 0.6966 L12: 0.6147 REMARK 3 L13: -0.1442 L23: -0.3914 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: -0.0584 S13: 0.1357 REMARK 3 S21: 0.2822 S22: -0.0448 S23: 0.2300 REMARK 3 S31: -0.0717 S32: -0.0929 S33: -0.0697 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 60:81) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7082 20.0508 158.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.3708 T22: 0.1677 REMARK 3 T33: 0.0925 T12: -0.1444 REMARK 3 T13: -0.0005 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.2935 L22: 2.6733 REMARK 3 L33: 2.4752 L12: 1.7832 REMARK 3 L13: -1.5389 L23: -1.4905 REMARK 3 S TENSOR REMARK 3 S11: 0.1908 S12: -0.1503 S13: 0.0872 REMARK 3 S21: 0.3308 S22: -0.1050 S23: 0.0553 REMARK 3 S31: -0.1206 S32: -0.0226 S33: -0.0952 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 82:97) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1384 12.7574 160.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.5262 T22: 0.3127 REMARK 3 T33: 0.2986 T12: -0.1920 REMARK 3 T13: -0.2269 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: 1.5564 L22: 1.0366 REMARK 3 L33: 2.6559 L12: -0.0190 REMARK 3 L13: -1.6097 L23: -0.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: -0.3890 S13: -0.1863 REMARK 3 S21: 0.3413 S22: -0.0965 S23: -0.2361 REMARK 3 S31: 0.0517 S32: 0.2965 S33: -0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 98:121) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9086 13.6095 148.3087 REMARK 3 T TENSOR REMARK 3 T11: 0.3180 T22: 0.2678 REMARK 3 T33: 0.2000 T12: -0.1922 REMARK 3 T13: -0.0936 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 3.4123 L22: 2.0076 REMARK 3 L33: 0.9901 L12: 0.2014 REMARK 3 L13: -0.8809 L23: 0.6737 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0113 S13: -0.2000 REMARK 3 S21: 0.0065 S22: 0.1009 S23: -0.2907 REMARK 3 S31: 0.0099 S32: 0.1661 S33: -0.0111 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:156) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9557 9.0354 144.5275 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.1266 REMARK 3 T33: 0.1979 T12: -0.1392 REMARK 3 T13: -0.0747 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.6549 L22: 2.1958 REMARK 3 L33: 1.5352 L12: 0.9070 REMARK 3 L13: -0.4913 L23: -0.4484 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0200 S13: -0.1193 REMARK 3 S21: 0.1078 S22: 0.0354 S23: -0.3443 REMARK 3 S31: 0.0505 S32: 0.0858 S33: -0.0023 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 157:180) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1353 14.2014 133.7691 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.1046 REMARK 3 T33: 0.1247 T12: -0.1286 REMARK 3 T13: 0.0119 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.2047 L22: 2.6388 REMARK 3 L33: 1.9270 L12: -0.0023 REMARK 3 L13: 0.5823 L23: -0.9418 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.1450 S13: 0.1513 REMARK 3 S21: -0.1481 S22: -0.0205 S23: -0.2655 REMARK 3 S31: 0.0311 S32: 0.0636 S33: 0.1397 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 181:202) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0168 8.0585 132.0006 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.1634 REMARK 3 T33: 0.1734 T12: -0.1577 REMARK 3 T13: 0.0159 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9414 L22: 2.6210 REMARK 3 L33: 0.9371 L12: 0.5570 REMARK 3 L13: -0.4977 L23: -1.2234 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.1440 S13: -0.0574 REMARK 3 S21: -0.2774 S22: 0.0627 S23: -0.2131 REMARK 3 S31: 0.1771 S32: -0.0251 S33: 0.0767 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 203:216) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0669 28.3994 131.1823 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.1898 REMARK 3 T33: 0.1453 T12: -0.1163 REMARK 3 T13: 0.0158 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 4.7439 L22: 3.1583 REMARK 3 L33: 1.7840 L12: -0.3495 REMARK 3 L13: 0.3015 L23: 1.4498 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.3733 S13: 0.4723 REMARK 3 S21: -0.4553 S22: -0.0260 S23: -0.1223 REMARK 3 S31: -0.2079 S32: 0.0658 S33: -0.0531 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 217:253) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0004 16.9905 133.3431 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.1906 REMARK 3 T33: 0.1541 T12: -0.1890 REMARK 3 T13: -0.0322 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.3514 L22: 0.5268 REMARK 3 L33: 0.1409 L12: 0.1930 REMARK 3 L13: -0.0303 L23: -0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0320 S13: -0.0255 REMARK 3 S21: -0.0257 S22: 0.0290 S23: 0.0365 REMARK 3 S31: 0.0439 S32: -0.0319 S33: 0.0322 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 254:268) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3663 18.7588 133.0858 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.2838 REMARK 3 T33: 0.2495 T12: -0.1499 REMARK 3 T13: -0.0691 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.3551 L22: 4.8973 REMARK 3 L33: 6.0539 L12: -0.4543 REMARK 3 L13: -0.1815 L23: 5.3049 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.1136 S13: -0.0138 REMARK 3 S21: -0.1865 S22: -0.2519 S23: 0.8119 REMARK 3 S31: 0.0417 S32: -0.4247 S33: 0.3379 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 269:289) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2673 7.6350 142.6699 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.2565 REMARK 3 T33: 0.2015 T12: -0.2234 REMARK 3 T13: -0.0039 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.3020 L22: 1.5559 REMARK 3 L33: 0.2745 L12: 0.7792 REMARK 3 L13: 0.0674 L23: -0.0788 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0355 S13: 0.0090 REMARK 3 S21: 0.0338 S22: -0.0004 S23: 0.0896 REMARK 3 S31: 0.0795 S32: -0.0903 S33: -0.0297 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.925 REMARK 200 RESOLUTION RANGE LOW (A) : 65.212 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13800 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.02100 REMARK 200 R SYM FOR SHELL (I) : 2.10600 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4DNM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 0.5 MM ZNCL, 0.5 MM D-ARABONATE-1,4-LACTONE; REMARK 280 RESERVOIR (20% PEG3350, 100 MM HEPES PH 7.5); CRYOPROTECTION REMARK 280 (RESERVOIR, 5 MM ZN, 25 MM D-ARABONATE-1,4-LACTONE, 20% GLYCEROL) REMARK 280 , SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.48333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.48333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 290 REMARK 465 PRO A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ALA A 294 REMARK 465 ARG A 295 REMARK 465 LEU A 296 REMARK 465 ALA A 297 REMARK 465 GLU A 298 REMARK 465 ASN A 299 REMARK 465 LEU A 300 REMARK 465 TYR A 301 REMARK 465 PHE A 302 REMARK 465 GLN A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 406 UNK UNX A 407 2.14 REMARK 500 OD2 ASP A 232 O HOH A 513 2.14 REMARK 500 O HOH A 600 O HOH A 663 2.15 REMARK 500 UNK UNX A 407 UNK UNX A 409 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 167 25.64 45.51 REMARK 500 LYS A 169 70.70 49.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HIS A 11 NE2 96.7 REMARK 620 3 ASP A 244 OD1 92.5 104.1 REMARK 620 4 UNX A 406 UNK 98.7 108.9 143.4 REMARK 620 5 UNX A 407 UNK 156.0 99.4 100.5 59.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 NE2 REMARK 620 2 HIS A 44 ND1 109.2 REMARK 620 3 HOH A 643 O 84.4 98.5 REMARK 620 4 HOH A 671 O 106.3 144.5 85.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 71 SG REMARK 620 2 ASP A 72 OD1 134.6 REMARK 620 3 ASP A 72 OD2 92.3 59.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 HOH A 700 O 93.7 REMARK 620 3 HOH A 701 O 83.2 161.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500235 RELATED DB: TARGETTRACK DBREF 4DLF A 1 296 UNP A9ANE4 A9ANE4_BURM1 1 296 SEQADV 4DLF ALA A 297 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF GLU A 298 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF ASN A 299 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF LEU A 300 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF TYR A 301 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF PHE A 302 UNP A9ANE4 EXPRESSION TAG SEQADV 4DLF GLN A 303 UNP A9ANE4 EXPRESSION TAG SEQRES 1 A 303 MET GLY ALA LEU ARG ILE ASP SER HIS GLN HIS PHE TRP SEQRES 2 A 303 ARG TYR ARG ALA ALA ASP TYR PRO TRP ILE GLY ALA GLY SEQRES 3 A 303 MET GLY VAL LEU ALA ARG ASP TYR LEU PRO ASP ALA LEU SEQRES 4 A 303 HIS PRO LEU MET HIS ALA GLN ALA LEU GLY ALA SER ILE SEQRES 5 A 303 ALA VAL GLN ALA ARG ALA GLY ARG ASP GLU THR ALA PHE SEQRES 6 A 303 LEU LEU GLU LEU ALA CYS ASP GLU ALA ARG ILE ALA ALA SEQRES 7 A 303 VAL VAL GLY TRP GLU ASP LEU ARG ALA PRO GLN LEU ALA SEQRES 8 A 303 GLU ARG VAL ALA GLU TRP ARG GLY THR LYS LEU ARG GLY SEQRES 9 A 303 PHE ARG HIS GLN LEU GLN ASP GLU ALA ASP VAL ARG ALA SEQRES 10 A 303 PHE VAL ASP ASP ALA ASP PHE ALA ARG GLY VAL ALA TRP SEQRES 11 A 303 LEU GLN ALA ASN ASP TYR VAL TYR ASP VAL LEU VAL PHE SEQRES 12 A 303 GLU ARG GLN LEU PRO ASP VAL GLN ALA PHE CYS ALA ARG SEQRES 13 A 303 HIS ASP ALA HIS TRP LEU VAL LEU ASP HIS ALA GLY LYS SEQRES 14 A 303 PRO ALA LEU ALA GLU PHE ASP ARG ASP ASP THR ALA LEU SEQRES 15 A 303 ALA ARG TRP ARG ALA ALA LEU ARG GLU LEU ALA ALA LEU SEQRES 16 A 303 PRO HIS VAL VAL CYS LYS LEU SER GLY LEU VAL THR GLU SEQRES 17 A 303 ALA ASP TRP ARG ARG GLY LEU ARG ALA SER ASP LEU ARG SEQRES 18 A 303 HIS ILE GLU GLN CYS LEU ASP ALA ALA LEU ASP ALA PHE SEQRES 19 A 303 GLY PRO GLN ARG LEU MET PHE GLY SER ASP TRP PRO VAL SEQRES 20 A 303 CYS LEU LEU ALA ALA SER TYR ASP GLU VAL ALA SER LEU SEQRES 21 A 303 VAL GLU ARG TRP ALA GLU SER ARG LEU SER ALA ALA GLU SEQRES 22 A 303 ARG SER ALA LEU TRP GLY GLY THR ALA ALA ARG CYS TYR SEQRES 23 A 303 ALA LEU PRO GLU PRO ALA ASP ALA ARG LEU ALA GLU ASN SEQRES 24 A 303 LEU TYR PHE GLN HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET GOL A 405 6 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 4(ZN 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 UNX 4(X) FORMUL 11 HOH *212(H2 O) HELIX 1 1 ARG A 16 TYR A 20 5 5 HELIX 2 2 MET A 27 ALA A 31 5 5 HELIX 3 3 LEU A 35 GLN A 46 1 12 HELIX 4 4 GLY A 59 CYS A 71 1 13 HELIX 5 5 GLN A 89 GLU A 96 1 8 HELIX 6 6 GLN A 108 GLU A 112 5 5 HELIX 7 7 ASP A 114 ASP A 121 1 8 HELIX 8 8 ASP A 121 ASN A 134 1 14 HELIX 9 9 PHE A 143 ARG A 145 5 3 HELIX 10 10 GLN A 146 HIS A 157 1 12 HELIX 11 11 HIS A 166 LYS A 169 5 4 HELIX 12 12 ALA A 171 PHE A 175 5 5 HELIX 13 13 THR A 180 ALA A 194 1 15 HELIX 14 14 ARG A 216 GLY A 235 1 20 HELIX 15 15 PRO A 246 ALA A 251 5 6 HELIX 16 16 SER A 253 LEU A 269 1 17 HELIX 17 17 SER A 270 TRP A 278 1 9 HELIX 18 18 GLY A 279 TYR A 286 1 8 SHEET 1 A 8 ILE A 6 GLN A 10 0 SHEET 2 A 8 ALA A 50 VAL A 54 1 O VAL A 54 N GLN A 10 SHEET 3 A 8 ILE A 76 GLY A 81 1 O VAL A 80 N ALA A 53 SHEET 4 A 8 LEU A 102 HIS A 107 1 O ARG A 103 N VAL A 79 SHEET 5 A 8 VAL A 137 VAL A 140 1 O ASP A 139 N PHE A 105 SHEET 6 A 8 LEU A 162 LEU A 164 1 O VAL A 163 N VAL A 140 SHEET 7 A 8 VAL A 198 LEU A 202 1 O VAL A 199 N LEU A 164 SHEET 8 A 8 LEU A 239 PHE A 241 1 O MET A 240 N LEU A 202 LINK NE2 HIS A 9 ZN ZN A 401 1555 1555 2.19 LINK NE2 HIS A 11 ZN ZN A 401 1555 1555 2.07 LINK NE2 HIS A 40 ZN ZN A 404 1555 1555 2.10 LINK ND1 HIS A 44 ZN ZN A 404 1555 1555 2.09 LINK SG CYS A 71 ZN ZN A 402 1555 1555 2.28 LINK OD1 ASP A 72 ZN ZN A 402 1555 1555 2.01 LINK OD2 ASP A 72 ZN ZN A 402 1555 1555 2.33 LINK OD1 ASP A 135 ZN ZN A 403 1555 1555 2.08 LINK OD1 ASP A 244 ZN ZN A 401 1555 1555 1.99 LINK ZN ZN A 401 UNK UNX A 406 1555 1555 2.08 LINK ZN ZN A 401 UNK UNX A 407 1555 1555 2.24 LINK ZN ZN A 403 O HOH A 700 1555 1555 2.02 LINK ZN ZN A 403 O HOH A 701 1555 1555 2.10 LINK ZN ZN A 404 O HOH A 643 1555 1555 2.13 LINK ZN ZN A 404 O HOH A 671 1555 1555 2.16 CISPEP 1 TRP A 245 PRO A 246 0 0.70 SITE 1 AC1 4 HIS A 9 HIS A 11 HIS A 166 ASP A 244 SITE 1 AC2 4 CYS A 71 ASP A 72 ASP A 176 HIS A 222 SITE 1 AC3 3 ASP A 135 HOH A 700 HOH A 701 SITE 1 AC4 4 HIS A 40 HIS A 44 HOH A 643 HOH A 671 SITE 1 AC5 3 GLU A 224 ARG A 263 ARG A 268 CRYST1 75.300 75.300 142.450 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013280 0.007667 0.000000 0.00000 SCALE2 0.000000 0.015335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007020 0.00000