HEADER LYASE 06-FEB-12 4DLK TITLE CRYSTAL STRUCTURE OF ATP-CA++ COMPLEX OF PURK: N5- TITLE 2 CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE; COMPND 5 EC: 4.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 592021; SOURCE 5 STRAIN: A0248; SOURCE 6 GENE: BAS0276, BA_0289, GBAA_0289, PURK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS CARBOXYLASE, ATP BINDING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.FUNG,M.L.TUNTLAND,B.D.SANTARSIERO,M.E.JOHNSON REVDAT 3 28-FEB-24 4DLK 1 REMARK LINK REVDAT 2 12-NOV-14 4DLK 1 JRNL REVDAT 1 06-FEB-13 4DLK 0 JRNL AUTH M.L.TUNTLAND,B.D.SANTARSIERO,M.E.JOHNSON,L.W.FUNG JRNL TITL ELUCIDATION OF THE BICARBONATE BINDING SITE AND INSIGHTS JRNL TITL 2 INTO THE CARBOXYLATION MECHANISM OF JRNL TITL 3 (N(5))-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHASE (PURK) JRNL TITL 4 FROM BACILLUS ANTHRACIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3057 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25372694 JRNL DOI 10.1107/S1399004714021166 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 51988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6160 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8380 ; 1.149 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 758 ; 5.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;38.986 ;25.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1088 ;13.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 9.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4520 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4DLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : REFMAC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 5MM DTT, 9% GLYCEROL, 9% REMARK 280 PEG6000, 100 MM ATP AND 10MM CA(NO3)2. , PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.68400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.63450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.63450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.68400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS DIMER AND SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 39.83 -83.78 REMARK 500 SER A 141 -166.79 58.45 REMARK 500 ASN A 267 -61.98 -91.39 REMARK 500 LEU A 330 31.67 -87.91 REMARK 500 ASP B 59 96.89 -62.99 REMARK 500 TYR B 82 149.26 67.07 REMARK 500 ARG B 83 -37.83 80.21 REMARK 500 SER B 141 -166.80 65.08 REMARK 500 LEU B 330 38.33 -87.17 REMARK 500 HIS B 370 15.75 57.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD2 REMARK 620 2 ATP A 404 O3G 86.8 REMARK 620 3 ATP A 405 O1G 147.0 91.8 REMARK 620 4 HOH A 533 O 93.0 174.0 91.7 REMARK 620 5 HOH A 543 O 71.1 80.8 76.1 104.8 REMARK 620 6 HOH A 551 O 84.5 100.3 128.0 73.7 155.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 255 OE1 REMARK 620 2 GLU A 255 OE2 50.1 REMARK 620 3 GLU A 268 OE2 84.4 120.6 REMARK 620 4 ATP A 404 O1G 147.8 161.6 74.1 REMARK 620 5 ATP A 405 O3G 85.3 85.0 132.9 92.0 REMARK 620 6 HOH A 534 O 127.5 77.5 133.3 84.3 87.8 REMARK 620 7 HOH A 537 O 97.1 73.5 78.0 101.4 149.0 66.1 REMARK 620 8 HOH A 561 O 71.4 116.5 67.2 78.2 65.8 147.5 144.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 268 OE2 REMARK 620 2 GLU A 268 OE1 50.6 REMARK 620 3 ATP A 404 O2B 108.9 89.8 REMARK 620 4 ATP A 404 O1G 74.0 115.1 77.4 REMARK 620 5 HOH A 526 O 129.1 79.7 77.2 150.4 REMARK 620 6 HOH A 529 O 142.2 164.4 91.7 80.3 85.5 REMARK 620 7 HOH A 549 O 86.9 82.8 152.3 129.8 75.2 88.7 REMARK 620 8 HOH A 561 O 64.4 103.8 150.8 73.5 130.1 82.0 56.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 152 O REMARK 620 2 GLU B 268 OE1 153.3 REMARK 620 3 ATP B 403 O2B 82.1 93.0 REMARK 620 4 ATP B 403 O1G 86.2 120.2 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 255 OE1 REMARK 620 2 GLU B 255 OE2 51.4 REMARK 620 3 GLU B 268 OE2 85.1 92.3 REMARK 620 4 ATP B 403 O1A 89.7 141.1 83.6 REMARK 620 5 ATP B 403 O3G 132.2 83.0 83.0 134.2 REMARK 620 6 ATP B 403 O3B 160.2 140.0 78.9 77.1 57.4 REMARK 620 7 HOH B 550 O 106.3 96.9 168.4 93.7 91.0 89.5 REMARK 620 8 HOH B 623 O 51.6 76.5 132.3 78.0 139.0 136.7 57.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q2O RELATED DB: PDB REMARK 900 RELATED ID: 3R5H RELATED DB: PDB REMARK 900 RELATED ID: 3QFF RELATED DB: PDB REMARK 900 RELATED ID: 3V4S RELATED DB: PDB DBREF 4DLK A 1 380 UNP Q81ZH7 Q81ZH7_BACAN 1 380 DBREF 4DLK B 1 380 UNP Q81ZH7 Q81ZH7_BACAN 1 380 SEQRES 1 A 380 MET THR ARG ILE ILE LEU PRO GLY LYS THR ILE GLY ILE SEQRES 2 A 380 ILE GLY GLY GLY GLN LEU GLY ARG MET MET ALA LEU ALA SEQRES 3 A 380 ALA LYS GLU MET GLY TYR LYS ILE ALA VAL LEU ASP PRO SEQRES 4 A 380 THR LYS ASN SER PRO CYS ALA GLN VAL ALA ASP ILE GLU SEQRES 5 A 380 ILE VAL ALA SER TYR ASP ASP LEU LYS ALA ILE GLN HIS SEQRES 6 A 380 LEU ALA GLU ILE SER ASP VAL VAL THR TYR GLU PHE GLU SEQRES 7 A 380 ASN ILE ASP TYR ARG CYS LEU GLN TRP LEU GLU LYS HIS SEQRES 8 A 380 ALA TYR LEU PRO GLN GLY SER GLN LEU LEU SER LYS THR SEQRES 9 A 380 GLN ASN ARG PHE THR GLU LYS ASN ALA ILE GLU LYS ALA SEQRES 10 A 380 GLY LEU PRO VAL ALA THR TYR ARG LEU VAL GLN ASN GLN SEQRES 11 A 380 GLU GLN LEU THR GLU ALA ILE ALA GLU LEU SER TYR PRO SEQRES 12 A 380 SER VAL LEU LYS THR THR THR GLY GLY TYR ASP GLY LYS SEQRES 13 A 380 GLY GLN VAL VAL LEU ARG SER GLU ALA ASP VAL ASP GLU SEQRES 14 A 380 ALA ARG LYS LEU ALA ASN ALA ALA GLU CYS ILE LEU GLU SEQRES 15 A 380 LYS TRP VAL PRO PHE GLU LYS GLU VAL SER VAL ILE VAL SEQRES 16 A 380 ILE ARG SER VAL SER GLY GLU THR LYS VAL PHE PRO VAL SEQRES 17 A 380 ALA GLU ASN ILE HIS VAL ASN ASN ILE LEU HIS GLU SER SEQRES 18 A 380 ILE VAL PRO ALA ARG ILE THR GLU GLU LEU SER GLN LYS SEQRES 19 A 380 ALA ILE ALA TYR ALA LYS VAL LEU ALA ASP GLU LEU GLU SEQRES 20 A 380 LEU VAL GLY THR LEU ALA VAL GLU MET PHE ALA THR ALA SEQRES 21 A 380 ASP GLY GLU ILE TYR ILE ASN GLU LEU ALA PRO ARG PRO SEQRES 22 A 380 HIS ASN SER GLY HIS TYR THR GLN ASP ALA CYS GLU THR SEQRES 23 A 380 SER GLN PHE GLY GLN HIS ILE ARG ALA ILE CYS ASN LEU SEQRES 24 A 380 PRO LEU GLY GLU THR ASN LEU LEU LYS PRO VAL VAL MET SEQRES 25 A 380 VAL ASN ILE LEU GLY GLU HIS ILE GLU GLY VAL LEU ARG SEQRES 26 A 380 GLN VAL ASN ARG LEU THR GLY CYS TYR LEU HIS LEU TYR SEQRES 27 A 380 GLY LYS GLU GLU ALA LYS ALA GLN ARG LYS MET GLY HIS SEQRES 28 A 380 VAL ASN ILE LEU ASN ASP ASN ILE GLU VAL ALA LEU GLU SEQRES 29 A 380 LYS ALA LYS SER LEU HIS ILE TRP ASP HIS GLN GLU GLN SEQRES 30 A 380 LEU LEU GLU SEQRES 1 B 380 MET THR ARG ILE ILE LEU PRO GLY LYS THR ILE GLY ILE SEQRES 2 B 380 ILE GLY GLY GLY GLN LEU GLY ARG MET MET ALA LEU ALA SEQRES 3 B 380 ALA LYS GLU MET GLY TYR LYS ILE ALA VAL LEU ASP PRO SEQRES 4 B 380 THR LYS ASN SER PRO CYS ALA GLN VAL ALA ASP ILE GLU SEQRES 5 B 380 ILE VAL ALA SER TYR ASP ASP LEU LYS ALA ILE GLN HIS SEQRES 6 B 380 LEU ALA GLU ILE SER ASP VAL VAL THR TYR GLU PHE GLU SEQRES 7 B 380 ASN ILE ASP TYR ARG CYS LEU GLN TRP LEU GLU LYS HIS SEQRES 8 B 380 ALA TYR LEU PRO GLN GLY SER GLN LEU LEU SER LYS THR SEQRES 9 B 380 GLN ASN ARG PHE THR GLU LYS ASN ALA ILE GLU LYS ALA SEQRES 10 B 380 GLY LEU PRO VAL ALA THR TYR ARG LEU VAL GLN ASN GLN SEQRES 11 B 380 GLU GLN LEU THR GLU ALA ILE ALA GLU LEU SER TYR PRO SEQRES 12 B 380 SER VAL LEU LYS THR THR THR GLY GLY TYR ASP GLY LYS SEQRES 13 B 380 GLY GLN VAL VAL LEU ARG SER GLU ALA ASP VAL ASP GLU SEQRES 14 B 380 ALA ARG LYS LEU ALA ASN ALA ALA GLU CYS ILE LEU GLU SEQRES 15 B 380 LYS TRP VAL PRO PHE GLU LYS GLU VAL SER VAL ILE VAL SEQRES 16 B 380 ILE ARG SER VAL SER GLY GLU THR LYS VAL PHE PRO VAL SEQRES 17 B 380 ALA GLU ASN ILE HIS VAL ASN ASN ILE LEU HIS GLU SER SEQRES 18 B 380 ILE VAL PRO ALA ARG ILE THR GLU GLU LEU SER GLN LYS SEQRES 19 B 380 ALA ILE ALA TYR ALA LYS VAL LEU ALA ASP GLU LEU GLU SEQRES 20 B 380 LEU VAL GLY THR LEU ALA VAL GLU MET PHE ALA THR ALA SEQRES 21 B 380 ASP GLY GLU ILE TYR ILE ASN GLU LEU ALA PRO ARG PRO SEQRES 22 B 380 HIS ASN SER GLY HIS TYR THR GLN ASP ALA CYS GLU THR SEQRES 23 B 380 SER GLN PHE GLY GLN HIS ILE ARG ALA ILE CYS ASN LEU SEQRES 24 B 380 PRO LEU GLY GLU THR ASN LEU LEU LYS PRO VAL VAL MET SEQRES 25 B 380 VAL ASN ILE LEU GLY GLU HIS ILE GLU GLY VAL LEU ARG SEQRES 26 B 380 GLN VAL ASN ARG LEU THR GLY CYS TYR LEU HIS LEU TYR SEQRES 27 B 380 GLY LYS GLU GLU ALA LYS ALA GLN ARG LYS MET GLY HIS SEQRES 28 B 380 VAL ASN ILE LEU ASN ASP ASN ILE GLU VAL ALA LEU GLU SEQRES 29 B 380 LYS ALA LYS SER LEU HIS ILE TRP ASP HIS GLN GLU GLN SEQRES 30 B 380 LEU LEU GLU HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET ATP A 404 31 HET ATP A 405 31 HET ATP A 406 31 HET PO4 A 407 5 HET CA B 401 1 HET CA B 402 1 HET ATP B 403 31 HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 3 CA 5(CA 2+) FORMUL 6 ATP 4(C10 H16 N5 O13 P3) FORMUL 9 PO4 O4 P 3- FORMUL 13 HOH *308(H2 O) HELIX 1 1 GLY A 17 MET A 30 1 14 HELIX 2 2 ASP A 59 ILE A 69 1 11 HELIX 3 3 ASP A 81 ALA A 92 1 12 HELIX 4 4 SER A 98 GLN A 105 1 8 HELIX 5 5 ASN A 106 ALA A 117 1 12 HELIX 6 6 ASN A 129 SER A 141 1 13 HELIX 7 7 SER A 163 ALA A 165 5 3 HELIX 8 8 ASP A 166 ALA A 177 1 12 HELIX 9 9 THR A 228 LEU A 246 1 19 HELIX 10 10 HIS A 274 HIS A 278 5 5 HELIX 11 11 TYR A 279 CYS A 284 1 6 HELIX 12 12 SER A 287 ASN A 298 1 12 HELIX 13 13 HIS A 319 GLN A 326 1 8 HELIX 14 14 VAL A 327 LEU A 330 5 4 HELIX 15 15 ASN A 358 LEU A 369 1 12 HELIX 16 16 TRP A 372 GLU A 380 1 9 HELIX 17 17 GLY B 17 MET B 30 1 14 HELIX 18 18 ASP B 59 ILE B 69 1 11 HELIX 19 19 ARG B 83 ALA B 92 1 10 HELIX 20 20 SER B 98 GLN B 105 1 8 HELIX 21 21 ASN B 106 ALA B 117 1 12 HELIX 22 22 ASN B 129 SER B 141 1 13 HELIX 23 23 SER B 163 ALA B 165 5 3 HELIX 24 24 ASP B 166 ALA B 177 1 12 HELIX 25 25 THR B 228 LEU B 246 1 19 HELIX 26 26 HIS B 274 HIS B 278 5 5 HELIX 27 27 TYR B 279 CYS B 284 1 6 HELIX 28 28 SER B 287 ASN B 298 1 12 HELIX 29 29 GLY B 317 GLN B 326 1 10 HELIX 30 30 VAL B 327 LEU B 330 5 4 HELIX 31 31 ASN B 358 LEU B 369 1 12 HELIX 32 32 TRP B 372 GLU B 380 1 9 SHEET 1 A 4 ILE A 51 VAL A 54 0 SHEET 2 A 4 LYS A 33 ASP A 38 1 N VAL A 36 O ILE A 53 SHEET 3 A 4 THR A 10 ILE A 14 1 N ILE A 11 O LYS A 33 SHEET 4 A 4 VAL A 72 TYR A 75 1 O VAL A 72 N GLY A 12 SHEET 1 B 4 TYR A 124 VAL A 127 0 SHEET 2 B 4 CYS A 179 LYS A 183 -1 O CYS A 179 N VAL A 127 SHEET 3 B 4 SER A 144 THR A 148 -1 N VAL A 145 O GLU A 182 SHEET 4 B 4 GLN A 158 LEU A 161 -1 O LEU A 161 N SER A 144 SHEET 1 C 4 THR A 203 VAL A 205 0 SHEET 2 C 4 LYS A 189 ARG A 197 -1 N ILE A 196 O LYS A 204 SHEET 3 C 4 GLY A 250 ALA A 258 -1 O MET A 256 N VAL A 191 SHEET 4 C 4 ILE A 264 ALA A 270 -1 O ALA A 270 N ALA A 253 SHEET 1 D 7 THR A 203 VAL A 205 0 SHEET 2 D 7 LYS A 189 ARG A 197 -1 N ILE A 196 O LYS A 204 SHEET 3 D 7 ALA A 209 VAL A 214 -1 O ASN A 211 N GLU A 190 SHEET 4 D 7 ILE A 217 VAL A 223 -1 O HIS A 219 N ILE A 212 SHEET 5 D 7 VAL A 310 LEU A 316 -1 O VAL A 310 N VAL A 223 SHEET 6 D 7 LYS A 348 LEU A 355 -1 O ILE A 354 N VAL A 311 SHEET 7 D 7 CYS A 333 LEU A 337 -1 N TYR A 334 O ASN A 353 SHEET 1 E 4 ILE B 51 VAL B 54 0 SHEET 2 E 4 LYS B 33 ASP B 38 1 N VAL B 36 O ILE B 53 SHEET 3 E 4 THR B 10 ILE B 14 1 N ILE B 11 O LYS B 33 SHEET 4 E 4 VAL B 72 TYR B 75 1 O VAL B 72 N GLY B 12 SHEET 1 F 4 TYR B 124 VAL B 127 0 SHEET 2 F 4 CYS B 179 LYS B 183 -1 O CYS B 179 N VAL B 127 SHEET 3 F 4 SER B 144 THR B 148 -1 N LYS B 147 O ILE B 180 SHEET 4 F 4 GLN B 158 LEU B 161 -1 O LEU B 161 N SER B 144 SHEET 1 G 4 THR B 203 VAL B 205 0 SHEET 2 G 4 LYS B 189 ARG B 197 -1 N ILE B 196 O LYS B 204 SHEET 3 G 4 GLY B 250 ALA B 258 -1 O GLY B 250 N ARG B 197 SHEET 4 G 4 ILE B 264 ALA B 270 -1 O ALA B 270 N ALA B 253 SHEET 1 H 7 THR B 203 VAL B 205 0 SHEET 2 H 7 LYS B 189 ARG B 197 -1 N ILE B 196 O LYS B 204 SHEET 3 H 7 ALA B 209 VAL B 214 -1 O ASN B 211 N GLU B 190 SHEET 4 H 7 ILE B 217 VAL B 223 -1 O HIS B 219 N ILE B 212 SHEET 5 H 7 VAL B 310 LEU B 316 -1 O VAL B 310 N VAL B 223 SHEET 6 H 7 LYS B 348 LEU B 355 -1 O ILE B 354 N VAL B 311 SHEET 7 H 7 CYS B 333 LEU B 337 -1 N TYR B 334 O ASN B 353 LINK OD2 ASP A 154 CA CA A 403 1555 1555 2.41 LINK OE1 GLU A 255 CA CA A 402 1555 1555 2.53 LINK OE2 GLU A 255 CA CA A 402 1555 1555 2.64 LINK OE2 GLU A 268 CA CA A 401 1555 1555 2.34 LINK OE1 GLU A 268 CA CA A 401 1555 1555 2.69 LINK OE2 GLU A 268 CA CA A 402 1555 1555 2.40 LINK CA CA A 401 O2B ATP A 404 1555 1555 2.30 LINK CA CA A 401 O1G ATP A 404 1555 1555 2.46 LINK CA CA A 401 O HOH A 526 1555 1555 2.39 LINK CA CA A 401 O HOH A 529 1555 1555 2.31 LINK CA CA A 401 O HOH A 549 1555 1555 2.35 LINK CA CA A 401 O HOH A 561 1555 1555 3.05 LINK CA CA A 402 O1G ATP A 404 1555 1555 2.40 LINK CA CA A 402 O3G ATP A 405 1555 1555 2.36 LINK CA CA A 402 O HOH A 534 1555 1555 2.53 LINK CA CA A 402 O HOH A 537 1555 1555 2.51 LINK CA CA A 402 O HOH A 561 1555 1555 2.86 LINK CA CA A 403 O3G ATP A 404 1555 1555 2.40 LINK CA CA A 403 O1G ATP A 405 1555 1555 2.35 LINK CA CA A 403 O HOH A 533 1555 1555 2.36 LINK CA CA A 403 O HOH A 543 1555 1555 2.43 LINK CA CA A 403 O HOH A 551 1555 1555 2.56 LINK O GLY B 152 CA CA B 402 1555 1555 2.88 LINK OE1 GLU B 255 CA CA B 401 1555 1555 2.43 LINK OE2 GLU B 255 CA CA B 401 1555 1555 2.61 LINK OE2 GLU B 268 CA CA B 401 1555 1555 2.13 LINK OE1 GLU B 268 CA CA B 402 1555 1555 2.39 LINK CA CA B 401 O1A ATP B 403 1555 1555 2.35 LINK CA CA B 401 O3G ATP B 403 1555 1555 2.43 LINK CA CA B 401 O3B ATP B 403 1555 1555 2.56 LINK CA CA B 401 O HOH B 550 1555 1555 2.26 LINK CA CA B 401 O HOH B 623 1555 1555 3.19 LINK CA CA B 402 O2B ATP B 403 1555 1555 2.28 LINK CA CA B 402 O1G ATP B 403 1555 1555 2.30 CISPEP 1 TYR A 142 PRO A 143 0 -1.25 CISPEP 2 VAL A 223 PRO A 224 0 2.03 CISPEP 3 TYR B 142 PRO B 143 0 -0.85 CISPEP 4 VAL B 223 PRO B 224 0 3.55 SITE 1 AC1 6 GLU A 268 ATP A 404 HOH A 526 HOH A 529 SITE 2 AC1 6 HOH A 549 HOH A 561 SITE 1 AC2 7 GLU A 255 GLU A 268 ATP A 404 ATP A 405 SITE 2 AC2 7 HOH A 534 HOH A 537 HOH A 561 SITE 1 AC3 6 ASP A 154 ATP A 404 ATP A 405 HOH A 533 SITE 2 AC3 6 HOH A 543 HOH A 551 SITE 1 AC4 27 ARG A 107 LYS A 147 ASP A 154 GLY A 155 SITE 2 AC4 27 GLN A 158 GLU A 182 LYS A 183 TRP A 184 SITE 3 AC4 27 VAL A 185 PHE A 187 GLU A 190 PHE A 257 SITE 4 AC4 27 ASN A 267 GLU A 268 CA A 401 CA A 402 SITE 5 AC4 27 CA A 403 ATP A 405 HOH A 526 HOH A 529 SITE 6 AC4 27 HOH A 534 HOH A 537 HOH A 539 HOH A 543 SITE 7 AC4 27 HOH A 558 HOH A 570 HOH A 622 SITE 1 AC5 22 GLU A 76 TYR A 153 HIS A 213 GLU A 255 SITE 2 AC5 22 ARG A 272 HIS A 274 ASN A 275 LYS A 348 SITE 3 AC5 22 CA A 402 CA A 403 ATP A 404 ATP A 406 SITE 4 AC5 22 HOH A 505 HOH A 517 HOH A 533 HOH A 535 SITE 5 AC5 22 HOH A 543 HOH A 545 HOH A 561 HOH A 584 SITE 6 AC5 22 HOH A 619 HOH A 627 SITE 1 AC6 9 PHE A 77 LYS A 340 ARG A 347 ATP A 405 SITE 2 AC6 9 HOH A 542 HOH A 556 HOH A 604 HOH A 619 SITE 3 AC6 9 HOH A 646 SITE 1 AC7 7 ALA A 46 GLN A 47 VAL A 48 ALA A 49 SITE 2 AC7 7 GLN B 47 VAL B 48 ALA B 49 SITE 1 AC8 4 GLU B 255 GLU B 268 ATP B 403 HOH B 550 SITE 1 AC9 3 GLY B 152 GLU B 268 ATP B 403 SITE 1 BC1 27 ARG B 107 VAL B 145 LYS B 147 GLY B 152 SITE 2 BC1 27 TYR B 153 ASP B 154 GLY B 155 GLN B 158 SITE 3 BC1 27 GLU B 182 LYS B 183 TRP B 184 VAL B 185 SITE 4 BC1 27 PHE B 187 GLU B 190 HIS B 213 ASN B 216 SITE 5 BC1 27 GLU B 255 PHE B 257 ASN B 267 GLU B 268 SITE 6 BC1 27 CA B 401 CA B 402 HOH B 510 HOH B 561 SITE 7 BC1 27 HOH B 583 HOH B 606 HOH B 623 CRYST1 57.368 84.476 167.269 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005978 0.00000