HEADER UNKNOWN FUNCTION 07-FEB-12 4DM5 TITLE PUTATIVE OSMOTICALLY INDUCIBLE LIPOPROTEIN OSME CHARACTERIZATION BY TITLE 2 XRAY CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: OSMOTICALLY INDUCIBLE LIPOPROTEIN OSME; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 19-114; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: OSME, PA4876; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[DE3] PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS LIPOPROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.MAMELLI,S.SPINELLI,E.GOEMAERE,L.VUILLARD REVDAT 1 07-MAR-12 4DM5 0 JRNL AUTH L.MAMELLI,S.SPINELLI,E.GOEMAERE,L.VUILLARD JRNL TITL PUTATIVE OSMOTICALLY INDUCIBLE LIPOPROTEIN OSME JRNL TITL 2 CHARACTERIZATION BY XRAY CRYSTALLOGRAPHY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 52232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : -0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2918 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3927 ; 2.467 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 7.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.704 ;24.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;15.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2277 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6996 -0.7603 -40.8426 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.0892 REMARK 3 T33: 0.0675 T12: -0.0363 REMARK 3 T13: -0.0106 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.5441 L22: 0.7599 REMARK 3 L33: 1.4994 L12: 0.3853 REMARK 3 L13: -0.2646 L23: 0.6426 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.1417 S13: 0.1325 REMARK 3 S21: -0.0479 S22: 0.0206 S23: 0.1416 REMARK 3 S31: 0.0285 S32: 0.1589 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9509 2.1789 -13.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.1295 REMARK 3 T33: 0.0904 T12: 0.0364 REMARK 3 T13: 0.0230 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.3282 L22: 0.8963 REMARK 3 L33: 1.4013 L12: -0.0118 REMARK 3 L13: 0.3357 L23: 0.9061 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.1881 S13: -0.0599 REMARK 3 S21: 0.0303 S22: 0.0645 S23: 0.1083 REMARK 3 S31: -0.0096 S32: 0.2194 S33: -0.0487 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 95 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0759 -18.2017 -42.7466 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.0616 REMARK 3 T33: 0.1369 T12: -0.0470 REMARK 3 T13: -0.0042 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.9711 L22: 1.4014 REMARK 3 L33: 0.8539 L12: 0.7808 REMARK 3 L13: -0.2882 L23: -0.0648 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.1409 S13: -0.4638 REMARK 3 S21: 0.0394 S22: -0.0744 S23: -0.0029 REMARK 3 S31: -0.0546 S32: -0.0134 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 8 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5365 -20.4463 -9.9356 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0334 REMARK 3 T33: 0.1331 T12: 0.0287 REMARK 3 T13: 0.0081 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.4845 L22: 1.2852 REMARK 3 L33: 1.0200 L12: -0.7892 REMARK 3 L13: 0.3475 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0657 S13: 0.3888 REMARK 3 S21: -0.0259 S22: -0.0692 S23: 0.0142 REMARK 3 S31: 0.0417 S32: 0.0166 S33: 0.0411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.560 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M NA-BORATE, 1.7M NA-CITRATE, REMARK 280 GLYCEROL 2.5%, 0.01M TRIS, 0.125M NACL, 0.001M DTT , PH 9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 96 REMARK 465 PRO A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 VAL B 6 REMARK 465 GLN B 7 REMARK 465 HIS B 103 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 LYS C 5 REMARK 465 VAL C 6 REMARK 465 GLN C 7 REMARK 465 ASN C 8 REMARK 465 ARG C 96 REMARK 465 PRO C 97 REMARK 465 HIS C 98 REMARK 465 HIS C 99 REMARK 465 HIS C 100 REMARK 465 HIS C 101 REMARK 465 HIS C 102 REMARK 465 HIS C 103 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 THR D 4 REMARK 465 LYS D 5 REMARK 465 VAL D 6 REMARK 465 GLN D 7 REMARK 465 ALA D 95 REMARK 465 ARG D 96 REMARK 465 PRO D 97 REMARK 465 HIS D 98 REMARK 465 HIS D 99 REMARK 465 HIS D 100 REMARK 465 HIS D 101 REMARK 465 HIS D 102 REMARK 465 HIS D 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 16 O HOH C 247 1.87 REMARK 500 NZ LYS C 26 O HOH C 232 1.89 REMARK 500 OE1 GLU C 32 O HOH C 209 2.01 REMARK 500 NZ LYS B 26 O HOH B 245 2.03 REMARK 500 OE1 GLN A 44 O HOH A 386 2.09 REMARK 500 O HOH D 229 O HOH D 233 2.11 REMARK 500 O HOH B 266 O HOH B 283 2.14 REMARK 500 O HOH A 352 O HOH A 372 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 350 O HOH D 254 1554 1.43 REMARK 500 OE1 GLU B 25 O HOH C 273 1666 1.86 REMARK 500 O HOH B 292 O HOH C 277 1666 1.92 REMARK 500 OE1 GLU B 25 NH1 ARG D 16 1565 2.09 REMARK 500 CD ARG A 35 O HOH C 251 1665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS D 91 CG HIS D 91 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 MSE A 48 CG - SE - CE ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 16 CG - CD - NE ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 35 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR B 68 CG - CD1 - CE1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP B 89 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG D 16 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 82 59.26 -91.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 DBREF 4DM5 A 2 97 UNP Q9HUT7 Q9HUT7_PSEAE 19 114 DBREF 4DM5 B 2 97 UNP Q9HUT7 Q9HUT7_PSEAE 19 114 DBREF 4DM5 C 2 97 UNP Q9HUT7 Q9HUT7_PSEAE 19 114 DBREF 4DM5 D 2 97 UNP Q9HUT7 Q9HUT7_PSEAE 19 114 SEQADV 4DM5 MSE A 1 UNP Q9HUT7 INITIATING METHIONINE SEQADV 4DM5 HIS A 98 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS A 99 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS A 100 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS A 101 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS A 102 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS A 103 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 MSE B 1 UNP Q9HUT7 INITIATING METHIONINE SEQADV 4DM5 HIS B 98 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS B 99 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS B 100 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS B 101 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS B 102 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS B 103 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 MSE C 1 UNP Q9HUT7 INITIATING METHIONINE SEQADV 4DM5 HIS C 98 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS C 99 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS C 100 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS C 101 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS C 102 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS C 103 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 MSE D 1 UNP Q9HUT7 INITIATING METHIONINE SEQADV 4DM5 HIS D 98 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS D 99 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS D 100 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS D 101 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS D 102 UNP Q9HUT7 EXPRESSION TAG SEQADV 4DM5 HIS D 103 UNP Q9HUT7 EXPRESSION TAG SEQRES 1 A 103 MSE ALA SER THR LYS VAL GLN ASN PRO VAL ASN TYR ILE SEQRES 2 A 103 THR PHE ARG ASN GLU PRO LEU VAL LYS ASP VAL GLU LYS SEQRES 3 A 103 GLY MSE SER GLN GLN GLU VAL LEU ARG ILE GLY GLY THR SEQRES 4 A 103 PRO SER GLY THR GLN LYS ARG LEU MSE LYS PRO GLY SER SEQRES 5 A 103 CYS ASN SER TYR ILE LEU ASN LYS ASP GLY GLN GLN GLN SEQRES 6 A 103 PRO PHE TYR VAL SER PHE ASP GLY SER GLY LYS VAL ASP SEQRES 7 A 103 GLY SER GLY PHE LEU SER CYS SER GLU LEU ASP ARG HIS SEQRES 8 A 103 GLU ARG ASP ALA ARG PRO HIS HIS HIS HIS HIS HIS SEQRES 1 B 103 MSE ALA SER THR LYS VAL GLN ASN PRO VAL ASN TYR ILE SEQRES 2 B 103 THR PHE ARG ASN GLU PRO LEU VAL LYS ASP VAL GLU LYS SEQRES 3 B 103 GLY MSE SER GLN GLN GLU VAL LEU ARG ILE GLY GLY THR SEQRES 4 B 103 PRO SER GLY THR GLN LYS ARG LEU MSE LYS PRO GLY SER SEQRES 5 B 103 CYS ASN SER TYR ILE LEU ASN LYS ASP GLY GLN GLN GLN SEQRES 6 B 103 PRO PHE TYR VAL SER PHE ASP GLY SER GLY LYS VAL ASP SEQRES 7 B 103 GLY SER GLY PHE LEU SER CYS SER GLU LEU ASP ARG HIS SEQRES 8 B 103 GLU ARG ASP ALA ARG PRO HIS HIS HIS HIS HIS HIS SEQRES 1 C 103 MSE ALA SER THR LYS VAL GLN ASN PRO VAL ASN TYR ILE SEQRES 2 C 103 THR PHE ARG ASN GLU PRO LEU VAL LYS ASP VAL GLU LYS SEQRES 3 C 103 GLY MSE SER GLN GLN GLU VAL LEU ARG ILE GLY GLY THR SEQRES 4 C 103 PRO SER GLY THR GLN LYS ARG LEU MSE LYS PRO GLY SER SEQRES 5 C 103 CYS ASN SER TYR ILE LEU ASN LYS ASP GLY GLN GLN GLN SEQRES 6 C 103 PRO PHE TYR VAL SER PHE ASP GLY SER GLY LYS VAL ASP SEQRES 7 C 103 GLY SER GLY PHE LEU SER CYS SER GLU LEU ASP ARG HIS SEQRES 8 C 103 GLU ARG ASP ALA ARG PRO HIS HIS HIS HIS HIS HIS SEQRES 1 D 103 MSE ALA SER THR LYS VAL GLN ASN PRO VAL ASN TYR ILE SEQRES 2 D 103 THR PHE ARG ASN GLU PRO LEU VAL LYS ASP VAL GLU LYS SEQRES 3 D 103 GLY MSE SER GLN GLN GLU VAL LEU ARG ILE GLY GLY THR SEQRES 4 D 103 PRO SER GLY THR GLN LYS ARG LEU MSE LYS PRO GLY SER SEQRES 5 D 103 CYS ASN SER TYR ILE LEU ASN LYS ASP GLY GLN GLN GLN SEQRES 6 D 103 PRO PHE TYR VAL SER PHE ASP GLY SER GLY LYS VAL ASP SEQRES 7 D 103 GLY SER GLY PHE LEU SER CYS SER GLU LEU ASP ARG HIS SEQRES 8 D 103 GLU ARG ASP ALA ARG PRO HIS HIS HIS HIS HIS HIS MODRES 4DM5 MSE A 28 MET SELENOMETHIONINE MODRES 4DM5 MSE A 48 MET SELENOMETHIONINE MODRES 4DM5 MSE B 28 MET SELENOMETHIONINE MODRES 4DM5 MSE B 48 MET SELENOMETHIONINE MODRES 4DM5 MSE C 28 MET SELENOMETHIONINE MODRES 4DM5 MSE C 48 MET SELENOMETHIONINE MODRES 4DM5 MSE D 28 MET SELENOMETHIONINE MODRES 4DM5 MSE D 48 MET SELENOMETHIONINE HET MSE A 28 16 HET MSE A 48 8 HET MSE B 28 16 HET MSE B 48 8 HET MSE C 28 8 HET MSE C 48 8 HET MSE D 28 8 HET MSE D 48 8 HET GOL A 201 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *350(H2 O) HELIX 1 1 ASN A 11 ARG A 16 1 6 HELIX 2 2 GLU A 18 ASP A 23 1 6 HELIX 3 3 SER A 29 GLY A 38 1 10 HELIX 4 4 SER A 84 ALA A 95 1 12 HELIX 5 5 ASN B 11 ARG B 16 1 6 HELIX 6 6 GLU B 18 ASP B 23 1 6 HELIX 7 7 SER B 29 GLY B 38 1 10 HELIX 8 8 SER B 84 ARG B 96 1 13 HELIX 9 9 ASN C 11 ARG C 16 1 6 HELIX 10 10 GLU C 18 ASP C 23 1 6 HELIX 11 11 SER C 29 GLY C 38 1 10 HELIX 12 12 SER C 84 ARG C 93 1 10 HELIX 13 13 ASN D 11 ARG D 16 1 6 HELIX 14 14 GLU D 18 ASP D 23 1 6 HELIX 15 15 SER D 29 GLY D 38 1 10 HELIX 16 16 SER D 84 GLU D 92 1 9 SHEET 1 A 4 GLY A 42 LYS A 45 0 SHEET 2 A 4 SER A 52 LYS A 60 -1 O SER A 55 N GLY A 42 SHEET 3 A 4 GLN A 63 PHE A 71 -1 O GLN A 65 N LEU A 58 SHEET 4 A 4 VAL A 77 GLY A 81 -1 O GLY A 79 N SER A 70 SHEET 1 B 4 GLY B 42 LYS B 45 0 SHEET 2 B 4 SER B 52 LYS B 60 -1 O SER B 55 N GLY B 42 SHEET 3 B 4 GLN B 63 PHE B 71 -1 O GLN B 65 N LEU B 58 SHEET 4 B 4 VAL B 77 GLY B 81 -1 O GLY B 79 N SER B 70 SHEET 1 C 4 GLY C 42 LYS C 45 0 SHEET 2 C 4 SER C 52 LYS C 60 -1 O SER C 55 N GLY C 42 SHEET 3 C 4 GLN C 63 PHE C 71 -1 O PHE C 71 N SER C 52 SHEET 4 C 4 VAL C 77 GLY C 81 -1 O GLY C 79 N SER C 70 SHEET 1 D 4 GLY D 42 LYS D 45 0 SHEET 2 D 4 SER D 52 LYS D 60 -1 O SER D 55 N GLY D 42 SHEET 3 D 4 GLN D 63 PHE D 71 -1 O VAL D 69 N ASN D 54 SHEET 4 D 4 VAL D 77 GLY D 81 -1 O GLY D 79 N SER D 70 SSBOND 1 CYS A 53 CYS A 85 1555 1555 2.06 SSBOND 2 CYS B 53 CYS B 85 1555 1555 2.06 SSBOND 3 CYS C 53 CYS C 85 1555 1555 2.03 SSBOND 4 CYS D 53 CYS D 85 1555 1555 2.06 LINK C GLY A 27 N AMSE A 28 1555 1555 1.35 LINK C GLY A 27 N BMSE A 28 1555 1555 1.32 LINK C AMSE A 28 N SER A 29 1555 1555 1.32 LINK C BMSE A 28 N SER A 29 1555 1555 1.32 LINK C LEU A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N LYS A 49 1555 1555 1.34 LINK C GLY B 27 N AMSE B 28 1555 1555 1.36 LINK C GLY B 27 N BMSE B 28 1555 1555 1.33 LINK C AMSE B 28 N SER B 29 1555 1555 1.35 LINK C BMSE B 28 N SER B 29 1555 1555 1.34 LINK C LEU B 47 N MSE B 48 1555 1555 1.36 LINK C MSE B 48 N LYS B 49 1555 1555 1.32 LINK C GLY C 27 N MSE C 28 1555 1555 1.34 LINK C MSE C 28 N SER C 29 1555 1555 1.33 LINK C LEU C 47 N MSE C 48 1555 1555 1.32 LINK C MSE C 48 N LYS C 49 1555 1555 1.33 LINK C GLY D 27 N MSE D 28 1555 1555 1.35 LINK C MSE D 28 N SER D 29 1555 1555 1.34 LINK C LEU D 47 N MSE D 48 1555 1555 1.33 LINK C MSE D 48 N LYS D 49 1555 1555 1.34 CISPEP 1 ASN D 8 PRO D 9 0 15.73 SITE 1 AC1 7 GLU A 32 ARG A 35 ILE A 36 GLU B 32 SITE 2 AC1 7 ARG B 35 ILE B 36 HOH B 266 CRYST1 39.130 44.260 59.280 94.20 93.92 116.07 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025556 0.012503 0.003214 0.00000 SCALE2 0.000000 0.025153 0.002918 0.00000 SCALE3 0.000000 0.000000 0.017022 0.00000