HEADER TRANSFERASE 07-FEB-12 4DMG TITLE THERMUS THERMOPHILUS M5C1942 METHYLTRANSFERASE RLMO COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN TTHA1493; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 5 GENE: TTHA1493; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS RRNA, METHYLTRANSFERASE, S-ADENOSYL-METHIONINE, 23S RIBOSOMAL RNA, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.G.LARSEN,A.RASMUSSEN,A.M.B.GIESSING,G.JOGL,F.KIRPEKAR REVDAT 5 28-FEB-24 4DMG 1 REMARK SEQADV REVDAT 4 15-NOV-17 4DMG 1 REMARK REVDAT 3 29-AUG-12 4DMG 1 JRNL REVDAT 2 25-JUL-12 4DMG 1 JRNL REVDAT 1 27-JUN-12 4DMG 0 JRNL AUTH L.H.LARSEN,A.RASMUSSEN,A.M.GIESSING,G.JOGL,F.KIRPEKAR JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF THE THERMUS JRNL TITL 2 THERMOPHILUS 5-METHYLCYTIDINE (M5C) METHYLTRANSFERASE JRNL TITL 3 MODIFYING 23 S RIBOSOMAL RNA (RRNA) BASE C1942. JRNL REF J.BIOL.CHEM. V. 287 27593 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22711535 JRNL DOI 10.1074/JBC.M112.376160 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 81642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3745 - 5.2051 0.93 2663 141 0.2044 0.2101 REMARK 3 2 5.2051 - 4.1361 0.96 2656 151 0.1437 0.1693 REMARK 3 3 4.1361 - 3.6146 0.97 2661 151 0.1519 0.1632 REMARK 3 4 3.6146 - 3.2847 0.97 2656 132 0.1684 0.2014 REMARK 3 5 3.2847 - 3.0496 0.97 2655 141 0.1730 0.2117 REMARK 3 6 3.0496 - 2.8700 0.98 2661 144 0.1854 0.2201 REMARK 3 7 2.8700 - 2.7264 0.98 2698 131 0.1830 0.1955 REMARK 3 8 2.7264 - 2.6078 0.99 2677 156 0.1790 0.2185 REMARK 3 9 2.6078 - 2.5075 0.98 2687 134 0.1845 0.2201 REMARK 3 10 2.5075 - 2.4210 0.99 2639 140 0.1746 0.2299 REMARK 3 11 2.4210 - 2.3454 0.99 2693 144 0.1729 0.2167 REMARK 3 12 2.3454 - 2.2783 0.99 2674 149 0.1727 0.1787 REMARK 3 13 2.2783 - 2.2184 0.99 2696 125 0.1710 0.2249 REMARK 3 14 2.2184 - 2.1643 0.99 2684 150 0.1576 0.2030 REMARK 3 15 2.1643 - 2.1151 0.99 2648 155 0.1760 0.1738 REMARK 3 16 2.1151 - 2.0701 1.00 2698 130 0.1791 0.2223 REMARK 3 17 2.0701 - 2.0287 1.00 2733 123 0.1776 0.2097 REMARK 3 18 2.0287 - 1.9904 1.00 2659 139 0.1710 0.2104 REMARK 3 19 1.9904 - 1.9549 1.00 2709 150 0.1805 0.2215 REMARK 3 20 1.9549 - 1.9218 1.00 2636 158 0.1917 0.2565 REMARK 3 21 1.9218 - 1.8908 0.99 2714 164 0.1951 0.2452 REMARK 3 22 1.8908 - 1.8617 1.00 2659 136 0.2114 0.2326 REMARK 3 23 1.8617 - 1.8343 1.00 2635 151 0.2239 0.2464 REMARK 3 24 1.8343 - 1.8085 1.00 2768 153 0.2269 0.2672 REMARK 3 25 1.8085 - 1.7841 1.00 2636 115 0.2246 0.3339 REMARK 3 26 1.7841 - 1.7609 1.00 2723 136 0.2306 0.2681 REMARK 3 27 1.7609 - 1.7389 1.00 2693 134 0.2376 0.2812 REMARK 3 28 1.7389 - 1.7179 1.00 2662 138 0.2557 0.2564 REMARK 3 29 1.7179 - 1.7000 0.95 2581 117 0.2802 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 45.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.06720 REMARK 3 B22 (A**2) : 5.77810 REMARK 3 B33 (A**2) : -0.71090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.71560 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6399 REMARK 3 ANGLE : 0.989 8687 REMARK 3 CHIRALITY : 0.066 943 REMARK 3 PLANARITY : 0.004 1147 REMARK 3 DIHEDRAL : 11.975 2471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:37) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0283 3.9678 81.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.1319 REMARK 3 T33: 0.3785 T12: -0.1051 REMARK 3 T13: -0.1677 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.6934 L22: 0.4534 REMARK 3 L33: 0.7584 L12: -0.1725 REMARK 3 L13: 0.4433 L23: 0.3401 REMARK 3 S TENSOR REMARK 3 S11: 0.4138 S12: -0.3844 S13: -0.6829 REMARK 3 S21: -0.1533 S22: 0.0724 S23: 0.2191 REMARK 3 S31: 0.2880 S32: -0.4648 S33: 0.2551 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 38:62) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4595 6.7031 78.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: -0.3690 REMARK 3 T33: 0.3558 T12: -0.4240 REMARK 3 T13: -0.1849 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 0.5025 L22: 0.3765 REMARK 3 L33: 0.2806 L12: 0.1242 REMARK 3 L13: 0.3681 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: 0.1334 S12: 0.3325 S13: -0.5109 REMARK 3 S21: -0.4077 S22: 0.6021 S23: 0.3369 REMARK 3 S31: 0.3940 S32: -0.1092 S33: 1.6214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 63:188) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8210 25.9854 73.9051 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1386 REMARK 3 T33: 0.1583 T12: -0.0184 REMARK 3 T13: -0.0160 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 1.3646 L22: 1.0445 REMARK 3 L33: 0.8317 L12: 0.8475 REMARK 3 L13: -0.3166 L23: -1.0489 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: 0.1840 S13: 0.1012 REMARK 3 S21: -0.1489 S22: 0.1517 S23: 0.1045 REMARK 3 S31: 0.0886 S32: -0.1795 S33: 0.0719 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 189:314) REMARK 3 ORIGIN FOR THE GROUP (A): 63.3850 25.9514 78.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.0646 REMARK 3 T33: 0.1066 T12: 0.0005 REMARK 3 T13: 0.0025 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.9811 L22: 0.9363 REMARK 3 L33: 1.0018 L12: -0.2367 REMARK 3 L13: 0.0258 L23: -0.4806 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.1166 S13: 0.0001 REMARK 3 S21: -0.0291 S22: -0.0203 S23: 0.0508 REMARK 3 S31: -0.0617 S32: -0.0211 S33: 0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 315:385) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1299 18.0362 90.6814 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.0698 REMARK 3 T33: 0.1316 T12: -0.0020 REMARK 3 T13: -0.0029 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.5087 L22: 0.1498 REMARK 3 L33: 0.7583 L12: -0.1063 REMARK 3 L13: -0.4845 L23: -0.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0389 S13: -0.1169 REMARK 3 S21: 0.0233 S22: 0.0150 S23: 0.0632 REMARK 3 S31: 0.0074 S32: 0.0467 S33: -0.0022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:182) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4904 16.9260 115.7676 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.2242 REMARK 3 T33: 0.1120 T12: -0.0177 REMARK 3 T13: -0.0067 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.8274 L22: 0.6924 REMARK 3 L33: 0.8323 L12: -0.4516 REMARK 3 L13: -0.1869 L23: 0.3544 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.4012 S13: -0.1286 REMARK 3 S21: 0.0274 S22: -0.0218 S23: 0.0247 REMARK 3 S31: 0.0888 S32: 0.1280 S33: -0.0239 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 183:385) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4678 22.0113 109.4239 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1458 REMARK 3 T33: 0.0911 T12: 0.0154 REMARK 3 T13: 0.0075 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 1.3778 L22: 0.4465 REMARK 3 L33: 1.1246 L12: 0.0979 REMARK 3 L13: -0.1388 L23: 0.1792 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.3735 S13: -0.0858 REMARK 3 S21: 0.0420 S22: 0.0012 S23: -0.0078 REMARK 3 S31: -0.0130 S32: -0.0266 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81685 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 50MM SODIUM CITRATE, 5MM REMARK 280 ADOMET, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.99900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 386 REMARK 465 GLU A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 LEU B 386 REMARK 465 GLU B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 572 O HOH B 740 1.80 REMARK 500 O HOH B 597 O HOH B 793 1.82 REMARK 500 O HOH B 619 O HOH B 682 1.88 REMARK 500 O HOH A 662 O HOH A 852 1.88 REMARK 500 O HOH A 654 O HOH A 750 1.90 REMARK 500 O HOH A 831 O HOH A 880 1.91 REMARK 500 O HOH A 863 O HOH A 866 1.92 REMARK 500 O HOH A 843 O HOH A 867 1.94 REMARK 500 O HOH B 671 O HOH B 680 1.95 REMARK 500 O HOH A 764 O HOH A 816 1.95 REMARK 500 OE2 GLU B 371 O HOH B 569 1.95 REMARK 500 O HOH B 592 O HOH B 611 1.96 REMARK 500 O HOH A 589 O HOH A 731 1.97 REMARK 500 OE2 GLU B 163 O HOH B 789 1.97 REMARK 500 NE2 GLN B 121 O HOH B 679 1.97 REMARK 500 O HOH B 738 O HOH B 739 1.98 REMARK 500 O HOH B 695 O HOH B 780 1.98 REMARK 500 O HOH A 859 O HOH A 879 2.00 REMARK 500 OG SER A 124 O HOH A 585 2.02 REMARK 500 O LEU A 385 O HOH A 841 2.05 REMARK 500 O HOH B 728 O HOH B 766 2.05 REMARK 500 O HOH A 798 O HOH A 813 2.06 REMARK 500 O HOH A 855 O HOH A 867 2.08 REMARK 500 O HOH B 731 O HOH B 742 2.10 REMARK 500 O HOH B 766 O HOH B 773 2.11 REMARK 500 O HOH B 736 O HOH B 746 2.12 REMARK 500 O HOH B 649 O HOH B 656 2.15 REMARK 500 O HOH A 840 O HOH A 850 2.15 REMARK 500 O HOH B 633 O HOH B 806 2.15 REMARK 500 OE1 GLU A 247 O HOH A 818 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 765 O HOH B 767 2757 1.88 REMARK 500 O HOH A 634 O HOH A 695 2756 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 64.06 -102.18 REMARK 500 HIS A 100 60.33 -114.05 REMARK 500 LYS A 194 -120.46 57.81 REMARK 500 TYR A 224 -132.27 47.42 REMARK 500 LEU A 291 -61.03 66.96 REMARK 500 HIS A 363 71.79 -116.58 REMARK 500 GLU B 35 40.60 -84.73 REMARK 500 ASP B 56 109.71 -163.46 REMARK 500 LEU B 73 60.88 -101.03 REMARK 500 HIS B 100 60.89 -117.04 REMARK 500 THR B 195 -78.20 -98.02 REMARK 500 TYR B 224 -131.31 49.74 REMARK 500 HIS B 363 70.23 -118.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 401 DBREF 4DMG A 1 385 UNP Q5SI81 Q5SI81_THET8 1 385 DBREF 4DMG B 1 385 UNP Q5SI81 Q5SI81_THET8 1 385 SEQADV 4DMG LEU A 386 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG GLU A 387 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 388 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 389 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 390 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 391 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 392 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS A 393 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG LEU B 386 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG GLU B 387 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 388 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 389 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 390 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 391 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 392 UNP Q5SI81 EXPRESSION TAG SEQADV 4DMG HIS B 393 UNP Q5SI81 EXPRESSION TAG SEQRES 1 A 393 MET LEU GLY PRO VAL LEU ARG LEU VAL VAL LYS ALA GLY SEQRES 2 A 393 LYS GLU ARG LYS LEU ARG ASN PHE TYR PRO ASN LEU TYR SEQRES 3 A 393 ARG ASP GLU ILE ALA ALA PRO PRO GLU GLY VAL GLY VAL SEQRES 4 A 393 ALA GLU ALA VAL ASP ALA GLU GLY HIS PHE LEU ALA VAL SEQRES 5 A 393 GLY TYR TYR ASP PRO ARG SER ARG VAL PRO PHE ARG ALA SEQRES 6 A 393 PHE ARG PHE ASP PRO GLY PRO LEU ASN ARG ALA PHE PHE SEQRES 7 A 393 GLN GLY ARG PHE ALA ARG ALA LEU ARG ARG ARG GLN GLY SEQRES 8 A 393 LEU GLY GLU SER HIS ARG LEU VAL HIS GLY GLU ALA ASP SEQRES 9 A 393 GLY LEU PRO GLY LEU VAL VAL ASP ARG PHE GLY GLU VAL SEQRES 10 A 393 LEU VAL LEU GLN VAL ARG SER ARG GLY MET GLU ALA LEU SEQRES 11 A 393 ARG GLU VAL TRP LEU PRO ALA LEU LEU GLU VAL VAL ALA SEQRES 12 A 393 PRO LYS GLY VAL TYR GLU ARG SER ASP VAL GLU ALA ARG SEQRES 13 A 393 ARG GLN GLU GLY LEU PRO GLU ARG VAL GLY VAL VAL TYR SEQRES 14 A 393 GLY GLU VAL PRO GLU VAL LEU GLU VAL GLU GLU ASP GLY SEQRES 15 A 393 LEU ARG PHE PRO ILE PRO LEU ALA LEU ALA GLN LYS THR SEQRES 16 A 393 GLY TYR TYR LEU ASP GLN ARG GLU ASN ARG ARG LEU PHE SEQRES 17 A 393 GLU ALA MET VAL ARG PRO GLY GLU ARG VAL LEU ASP VAL SEQRES 18 A 393 TYR SER TYR VAL GLY GLY PHE ALA LEU ARG ALA ALA ARG SEQRES 19 A 393 LYS GLY ALA TYR ALA LEU ALA VAL ASP LYS ASP LEU GLU SEQRES 20 A 393 ALA LEU GLY VAL LEU ASP GLN ALA ALA LEU ARG LEU GLY SEQRES 21 A 393 LEU ARG VAL ASP ILE ARG HIS GLY GLU ALA LEU PRO THR SEQRES 22 A 393 LEU ARG GLY LEU GLU GLY PRO PHE HIS HIS VAL LEU LEU SEQRES 23 A 393 ASP PRO PRO THR LEU VAL LYS ARG PRO GLU GLU LEU PRO SEQRES 24 A 393 ALA MET LYS ARG HIS LEU VAL ASP LEU VAL ARG GLU ALA SEQRES 25 A 393 LEU ARG LEU LEU ALA GLU GLU GLY PHE LEU TRP LEU SER SEQRES 26 A 393 SER CYS SER TYR HIS LEU ARG LEU GLU ASP LEU LEU GLU SEQRES 27 A 393 VAL ALA ARG ARG ALA ALA ALA ASP LEU GLY ARG ARG LEU SEQRES 28 A 393 ARG VAL HIS ARG VAL THR TYR GLN PRO GLU ASP HIS PRO SEQRES 29 A 393 TRP SER LEU HIS ILE PRO GLU SER LEU TYR LEU LYS THR SEQRES 30 A 393 LEU VAL LEU GLN ASP ASP PRO LEU LEU GLU HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS SEQRES 1 B 393 MET LEU GLY PRO VAL LEU ARG LEU VAL VAL LYS ALA GLY SEQRES 2 B 393 LYS GLU ARG LYS LEU ARG ASN PHE TYR PRO ASN LEU TYR SEQRES 3 B 393 ARG ASP GLU ILE ALA ALA PRO PRO GLU GLY VAL GLY VAL SEQRES 4 B 393 ALA GLU ALA VAL ASP ALA GLU GLY HIS PHE LEU ALA VAL SEQRES 5 B 393 GLY TYR TYR ASP PRO ARG SER ARG VAL PRO PHE ARG ALA SEQRES 6 B 393 PHE ARG PHE ASP PRO GLY PRO LEU ASN ARG ALA PHE PHE SEQRES 7 B 393 GLN GLY ARG PHE ALA ARG ALA LEU ARG ARG ARG GLN GLY SEQRES 8 B 393 LEU GLY GLU SER HIS ARG LEU VAL HIS GLY GLU ALA ASP SEQRES 9 B 393 GLY LEU PRO GLY LEU VAL VAL ASP ARG PHE GLY GLU VAL SEQRES 10 B 393 LEU VAL LEU GLN VAL ARG SER ARG GLY MET GLU ALA LEU SEQRES 11 B 393 ARG GLU VAL TRP LEU PRO ALA LEU LEU GLU VAL VAL ALA SEQRES 12 B 393 PRO LYS GLY VAL TYR GLU ARG SER ASP VAL GLU ALA ARG SEQRES 13 B 393 ARG GLN GLU GLY LEU PRO GLU ARG VAL GLY VAL VAL TYR SEQRES 14 B 393 GLY GLU VAL PRO GLU VAL LEU GLU VAL GLU GLU ASP GLY SEQRES 15 B 393 LEU ARG PHE PRO ILE PRO LEU ALA LEU ALA GLN LYS THR SEQRES 16 B 393 GLY TYR TYR LEU ASP GLN ARG GLU ASN ARG ARG LEU PHE SEQRES 17 B 393 GLU ALA MET VAL ARG PRO GLY GLU ARG VAL LEU ASP VAL SEQRES 18 B 393 TYR SER TYR VAL GLY GLY PHE ALA LEU ARG ALA ALA ARG SEQRES 19 B 393 LYS GLY ALA TYR ALA LEU ALA VAL ASP LYS ASP LEU GLU SEQRES 20 B 393 ALA LEU GLY VAL LEU ASP GLN ALA ALA LEU ARG LEU GLY SEQRES 21 B 393 LEU ARG VAL ASP ILE ARG HIS GLY GLU ALA LEU PRO THR SEQRES 22 B 393 LEU ARG GLY LEU GLU GLY PRO PHE HIS HIS VAL LEU LEU SEQRES 23 B 393 ASP PRO PRO THR LEU VAL LYS ARG PRO GLU GLU LEU PRO SEQRES 24 B 393 ALA MET LYS ARG HIS LEU VAL ASP LEU VAL ARG GLU ALA SEQRES 25 B 393 LEU ARG LEU LEU ALA GLU GLU GLY PHE LEU TRP LEU SER SEQRES 26 B 393 SER CYS SER TYR HIS LEU ARG LEU GLU ASP LEU LEU GLU SEQRES 27 B 393 VAL ALA ARG ARG ALA ALA ALA ASP LEU GLY ARG ARG LEU SEQRES 28 B 393 ARG VAL HIS ARG VAL THR TYR GLN PRO GLU ASP HIS PRO SEQRES 29 B 393 TRP SER LEU HIS ILE PRO GLU SER LEU TYR LEU LYS THR SEQRES 30 B 393 LEU VAL LEU GLN ASP ASP PRO LEU LEU GLU HIS HIS HIS SEQRES 31 B 393 HIS HIS HIS HET SAM A 401 27 HET SAM B 401 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *688(H2 O) HELIX 1 1 GLU A 15 ASN A 20 1 6 HELIX 2 2 TYR A 26 ASP A 28 5 3 HELIX 3 3 ASN A 74 ARG A 89 1 16 HELIX 4 4 GLU A 102 GLY A 105 5 4 HELIX 5 5 SER A 124 LEU A 130 1 7 HELIX 6 6 LEU A 130 ALA A 143 1 14 HELIX 7 7 ASP A 152 GLU A 159 1 8 HELIX 8 8 TYR A 198 ASP A 200 5 3 HELIX 9 9 GLN A 201 ALA A 210 1 10 HELIX 10 10 GLY A 226 LYS A 235 1 10 HELIX 11 11 ASP A 245 LEU A 259 1 15 HELIX 12 12 GLU A 269 GLY A 276 1 8 HELIX 13 13 ARG A 294 GLU A 296 5 3 HELIX 14 14 GLU A 297 LEU A 315 1 19 HELIX 15 15 ARG A 332 GLY A 348 1 17 HELIX 16 16 ILE A 369 LEU A 373 5 5 HELIX 17 17 GLU B 15 ASN B 20 1 6 HELIX 18 18 TYR B 26 ASP B 28 5 3 HELIX 19 19 ASN B 74 ARG B 89 1 16 HELIX 20 20 GLU B 102 GLY B 105 5 4 HELIX 21 21 SER B 124 LEU B 130 1 7 HELIX 22 22 LEU B 130 ALA B 143 1 14 HELIX 23 23 ASP B 152 GLU B 159 1 8 HELIX 24 24 LEU B 189 THR B 195 1 7 HELIX 25 25 TYR B 198 ASP B 200 5 3 HELIX 26 26 GLN B 201 VAL B 212 1 12 HELIX 27 27 GLY B 226 LYS B 235 1 10 HELIX 28 28 ASP B 245 LEU B 259 1 15 HELIX 29 29 GLU B 269 GLY B 276 1 8 HELIX 30 30 ARG B 294 GLU B 296 5 3 HELIX 31 31 GLU B 297 LEU B 315 1 19 HELIX 32 32 ARG B 332 GLY B 348 1 17 HELIX 33 33 ILE B 369 LEU B 373 5 5 SHEET 1 A 6 ASN A 24 LEU A 25 0 SHEET 2 A 6 PHE A 63 ARG A 67 -1 O PHE A 63 N LEU A 25 SHEET 3 A 6 PHE A 49 TYR A 55 -1 N VAL A 52 O ARG A 67 SHEET 4 A 6 GLY A 38 VAL A 43 -1 N ALA A 42 O ALA A 51 SHEET 5 A 6 ARG A 7 VAL A 10 1 N LEU A 8 O GLU A 41 SHEET 6 A 6 ILE A 30 ALA A 32 -1 O ALA A 32 N VAL A 9 SHEET 1 B 5 SER A 95 HIS A 100 0 SHEET 2 B 5 LEU A 109 PHE A 114 -1 O VAL A 111 N LEU A 98 SHEET 3 B 5 VAL A 117 VAL A 122 -1 O VAL A 117 N PHE A 114 SHEET 4 B 5 GLY A 146 GLU A 149 1 O TYR A 148 N LEU A 118 SHEET 5 B 5 GLY A 166 GLY A 170 -1 O GLY A 166 N GLU A 149 SHEET 1 C 2 VAL A 175 GLU A 180 0 SHEET 2 C 2 LEU A 183 PRO A 188 -1 O ILE A 187 N LEU A 176 SHEET 1 D 8 ASP A 264 HIS A 267 0 SHEET 2 D 8 TYR A 238 ASP A 243 1 N ALA A 241 O ASP A 264 SHEET 3 D 8 ARG A 217 VAL A 221 1 N VAL A 218 O TYR A 238 SHEET 4 D 8 PHE A 281 LEU A 286 1 O LEU A 285 N LEU A 219 SHEET 5 D 8 LEU A 316 SER A 326 1 O TRP A 323 N VAL A 284 SHEET 6 D 8 LYS A 376 ASP A 382 -1 O LEU A 380 N LEU A 322 SHEET 7 D 8 LEU A 351 TYR A 358 -1 N ARG A 355 O VAL A 379 SHEET 8 D 8 TRP B 365 SER B 366 -1 O TRP B 365 N VAL A 353 SHEET 1 E 8 TRP A 365 SER A 366 0 SHEET 2 E 8 LEU B 351 TYR B 358 -1 O VAL B 353 N TRP A 365 SHEET 3 E 8 LYS B 376 ASP B 382 -1 O VAL B 379 N ARG B 355 SHEET 4 E 8 LEU B 316 SER B 326 -1 N LEU B 322 O LEU B 380 SHEET 5 E 8 PHE B 281 LEU B 286 1 N VAL B 284 O TRP B 323 SHEET 6 E 8 ARG B 217 VAL B 221 1 N LEU B 219 O LEU B 285 SHEET 7 E 8 TYR B 238 ASP B 243 1 O TYR B 238 N VAL B 218 SHEET 8 E 8 VAL B 263 HIS B 267 1 O ARG B 266 N ALA B 241 SHEET 1 F 6 ASN B 24 LEU B 25 0 SHEET 2 F 6 PHE B 63 ARG B 67 -1 O PHE B 63 N LEU B 25 SHEET 3 F 6 PHE B 49 TYR B 55 -1 N VAL B 52 O ARG B 67 SHEET 4 F 6 GLY B 38 VAL B 43 -1 N ALA B 42 O ALA B 51 SHEET 5 F 6 ARG B 7 VAL B 10 1 N LEU B 8 O GLU B 41 SHEET 6 F 6 ILE B 30 ALA B 32 -1 O ALA B 32 N VAL B 9 SHEET 1 G 5 SER B 95 HIS B 100 0 SHEET 2 G 5 LEU B 109 PHE B 114 -1 O ARG B 113 N HIS B 96 SHEET 3 G 5 VAL B 117 VAL B 122 -1 O VAL B 117 N PHE B 114 SHEET 4 G 5 GLY B 146 GLU B 149 1 O TYR B 148 N LEU B 118 SHEET 5 G 5 GLY B 166 GLY B 170 -1 O VAL B 168 N VAL B 147 SHEET 1 H 2 VAL B 175 GLU B 180 0 SHEET 2 H 2 LEU B 183 PRO B 188 -1 O ILE B 187 N LEU B 176 CISPEP 1 GLY A 279 PRO A 280 0 4.86 CISPEP 2 GLY B 279 PRO B 280 0 5.07 SITE 1 AC1 19 GLN A 193 TYR A 198 ARG A 205 TYR A 222 SITE 2 AC1 19 SER A 223 TYR A 224 PHE A 228 ASP A 243 SITE 3 AC1 19 LYS A 244 ASP A 245 GLY A 268 GLU A 269 SITE 4 AC1 19 ALA A 270 ASP A 287 PRO A 289 HOH A 505 SITE 5 AC1 19 HOH A 569 HOH A 612 HOH A 683 SITE 1 AC2 18 TYR B 198 ARG B 205 TYR B 222 SER B 223 SITE 2 AC2 18 TYR B 224 PHE B 228 ASP B 243 LYS B 244 SITE 3 AC2 18 ASP B 245 GLY B 268 GLU B 269 ALA B 270 SITE 4 AC2 18 ASP B 287 HOH B 511 HOH B 515 HOH B 564 SITE 5 AC2 18 HOH B 607 HOH B 772 CRYST1 63.797 45.998 129.364 90.00 96.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015675 0.000000 0.001864 0.00000 SCALE2 0.000000 0.021740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007785 0.00000