HEADER OXIDOREDUCTASE 08-FEB-12 4DNJ TITLE THE CRYSTAL STRUCTURES OF 4-METHOXYBENZOATE BOUND CYP199A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: RPA1871; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHOU,S.G.BELL,W.YANG,A.B.H.TAN,R.ZHOU,E.O.D.JOHNSON,A.ZHANG,Z.RAO, AUTHOR 2 L.-L.WONG REVDAT 2 08-NOV-23 4DNJ 1 REMARK REVDAT 1 15-AUG-12 4DNJ 0 JRNL AUTH S.G.BELL,W.YANG,A.B.H.TAN,R.ZHOU,E.O.D.JOHNSON,A.ZHANG, JRNL AUTH 2 W.ZHOU,Z.RAO,L.-L.WONG JRNL TITL THE CRYSTAL STRUCTURES OF 4-METHOXYBENZOATE BOUND CYP199A2 JRNL TITL 2 AND CYP199A4: STRUCTURAL CHANGES ON SUBSTRATE BINDING AND JRNL TITL 3 THE IDENTIFICATION OF AN ANION BINDING SITE JRNL REF DALTON TRANS V. 41 8703 2012 JRNL REFN ISSN 1477-9226 JRNL PMID 22695988 JRNL DOI 10.1039/C2DT30783A REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 33863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 551 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3195 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4362 ; 1.928 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.620 ;22.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;13.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 1.154 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3197 ; 1.941 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 3.388 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 5.132 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26400 REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2RF7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 26% PEG 4000, 10% REMARK 280 ISOPROPANOL, PH 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.95850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.43800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.94200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.43800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.95850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.94200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 PRO A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 172 CG GLU A 172 CD 0.094 REMARK 500 VAL A 373 CB VAL A 373 CG1 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 86.74 -160.43 REMARK 500 LEU A 118 41.65 -107.43 REMARK 500 ILE A 151 -78.52 -85.90 REMARK 500 LEU A 154 -66.30 -143.72 REMARK 500 CYS A 361 116.24 -33.93 REMARK 500 LEU A 405 88.63 -151.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 HEM A 501 NA 100.5 REMARK 620 3 HEM A 501 NB 92.8 88.7 REMARK 620 4 HEM A 501 NC 88.7 170.7 89.5 REMARK 620 5 HEM A 501 ND 98.7 89.0 168.5 90.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DNZ RELATED DB: PDB REMARK 900 RELATED ID: 4DO1 RELATED DB: PDB DBREF 4DNJ A 1 412 UNP Q6N8N2 Q6N8N2_RHOPA 1 412 SEQRES 1 A 412 MET THR THR ALA PRO SER LEU VAL PRO VAL THR THR PRO SEQRES 2 A 412 SER GLN HIS GLY ALA GLY VAL PRO HIS LEU GLY ILE ASP SEQRES 3 A 412 PRO PHE ALA LEU ASP TYR PHE ALA ASP PRO TYR PRO GLU SEQRES 4 A 412 GLN GLU THR LEU ARG GLU ALA GLY PRO VAL VAL TYR LEU SEQRES 5 A 412 ASP LYS TRP ASN VAL TYR GLY VAL ALA ARG TYR ALA GLU SEQRES 6 A 412 VAL TYR ALA VAL LEU ASN ASP PRO LEU THR PHE CYS SER SEQRES 7 A 412 SER ARG GLY VAL GLY LEU SER ASP PHE LYS LYS GLU LYS SEQRES 8 A 412 PRO TRP ARG PRO PRO SER LEU ILE LEU GLU ALA ASP PRO SEQRES 9 A 412 PRO ALA HIS THR ARG THR ARG ALA VAL LEU SER LYS VAL SEQRES 10 A 412 LEU SER PRO ALA THR MET LYS ARG LEU ARG ASP GLY PHE SEQRES 11 A 412 ALA ALA ALA ALA ASP ALA LYS ILE ASP GLU LEU LEU ALA SEQRES 12 A 412 ARG GLY GLY ASN ILE ASP ALA ILE ALA ASP LEU ALA GLU SEQRES 13 A 412 ALA TYR PRO LEU SER VAL PHE PRO ASP ALA MET GLY LEU SEQRES 14 A 412 LYS GLN GLU GLY ARG GLU ASN LEU LEU PRO TYR ALA GLY SEQRES 15 A 412 LEU VAL PHE ASN ALA PHE GLY PRO PRO ASN GLU LEU ARG SEQRES 16 A 412 GLN SER ALA ILE GLU ARG SER ALA PRO HIS GLN ALA TYR SEQRES 17 A 412 VAL ALA GLU GLN CYS GLN ARG PRO ASN LEU ALA PRO GLY SEQRES 18 A 412 GLY PHE GLY ALA CYS ILE HIS ALA PHE SER ASP THR GLY SEQRES 19 A 412 GLU ILE THR PRO GLU GLU ALA PRO LEU LEU VAL ARG SER SEQRES 20 A 412 LEU LEU SER ALA GLY LEU ASP THR THR VAL ASN GLY ILE SEQRES 21 A 412 ALA ALA ALA VAL TYR CYS LEU ALA ARG PHE PRO ASP GLU SEQRES 22 A 412 PHE ALA ARG LEU ARG ALA ASP PRO SER LEU ALA ARG ASN SEQRES 23 A 412 ALA PHE GLU GLU ALA VAL ARG PHE GLU SER PRO VAL GLN SEQRES 24 A 412 THR PHE PHE ARG THR THR THR ARG ASP VAL GLU LEU ALA SEQRES 25 A 412 GLY ALA THR ILE GLY GLU GLY GLU LYS VAL LEU MET PHE SEQRES 26 A 412 LEU GLY SER ALA ASN ARG ASP PRO ARG ARG TRP ASP ASP SEQRES 27 A 412 PRO ASP ARG TYR ASP ILE THR ARG LYS THR SER GLY HIS SEQRES 28 A 412 VAL GLY PHE GLY SER GLY VAL HIS MET CYS VAL GLY GLN SEQRES 29 A 412 LEU VAL ALA ARG LEU GLU GLY GLU VAL VAL LEU ALA ALA SEQRES 30 A 412 LEU ALA ARG LYS VAL ALA ALA ILE GLU ILE ALA GLY PRO SEQRES 31 A 412 LEU LYS ARG ARG PHE ASN ASN THR LEU ARG GLY LEU GLU SEQRES 32 A 412 SER LEU PRO ILE GLN LEU THR PRO ALA HET HEM A 501 43 HET ANN A 502 11 HET CL A 503 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ANN 4-METHOXYBENZOIC ACID HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN ANN P-ANISIC ACID FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 ANN C8 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *551(H2 O) HELIX 1 1 ALA A 29 ASP A 35 1 7 HELIX 2 2 PRO A 36 GLY A 47 1 12 HELIX 3 3 ARG A 62 ASN A 71 1 10 HELIX 4 4 PRO A 105 LEU A 118 1 14 HELIX 5 5 SER A 119 ARG A 144 1 26 HELIX 6 6 GLU A 156 GLY A 168 1 13 HELIX 7 7 GLY A 173 GLU A 175 5 3 HELIX 8 8 ASN A 176 PHE A 188 1 13 HELIX 9 9 ASN A 192 ARG A 201 1 10 HELIX 10 10 SER A 202 CYS A 213 1 12 HELIX 11 11 GLN A 214 LEU A 218 5 5 HELIX 12 12 GLY A 222 PHE A 230 1 9 HELIX 13 13 GLU A 239 GLY A 252 1 14 HELIX 14 14 LEU A 253 PHE A 270 1 18 HELIX 15 15 PHE A 270 ASP A 280 1 11 HELIX 16 16 LEU A 283 SER A 296 1 14 HELIX 17 17 LEU A 326 ASN A 330 1 5 HELIX 18 18 GLY A 363 LYS A 381 1 19 SHEET 1 A 6 HIS A 22 LEU A 23 0 SHEET 2 A 6 VAL A 50 LEU A 52 1 O TYR A 51 N LEU A 23 SHEET 3 A 6 VAL A 57 VAL A 60 -1 O VAL A 57 N LEU A 52 SHEET 4 A 6 LYS A 321 PHE A 325 1 O LEU A 323 N TYR A 58 SHEET 5 A 6 THR A 300 THR A 305 -1 N PHE A 301 O MET A 324 SHEET 6 A 6 PHE A 76 CYS A 77 -1 N CYS A 77 O THR A 304 SHEET 1 B 3 ASN A 147 ASP A 149 0 SHEET 2 B 3 PRO A 406 PRO A 411 -1 O ILE A 407 N ILE A 148 SHEET 3 B 3 VAL A 382 ILE A 387 -1 N ALA A 384 O THR A 410 SHEET 1 C 2 VAL A 309 LEU A 311 0 SHEET 2 C 2 ALA A 314 ILE A 316 -1 O ILE A 316 N VAL A 309 SHEET 1 D 2 LYS A 392 PHE A 395 0 SHEET 2 D 2 ARG A 400 SER A 404 -1 O GLU A 403 N LYS A 392 LINK SG CYS A 361 FE HEM A 501 1555 1555 2.38 CISPEP 1 PRO A 104 PRO A 105 0 5.27 SITE 1 AC1 21 ILE A 99 LEU A 100 HIS A 107 ARG A 111 SITE 2 AC1 21 ALA A 251 GLY A 252 THR A 255 THR A 256 SITE 3 AC1 21 PHE A 301 ARG A 303 GLY A 353 PHE A 354 SITE 4 AC1 21 GLY A 355 HIS A 359 CYS A 361 VAL A 362 SITE 5 AC1 21 GLY A 363 ALA A 367 ANN A 502 HOH A 614 SITE 6 AC1 21 HOH A 632 SITE 1 AC2 10 ARG A 94 SER A 97 LEU A 100 PHE A 185 SITE 2 AC2 10 SER A 247 SER A 250 ALA A 251 PHE A 301 SITE 3 AC2 10 HEM A 501 HOH A 645 SITE 1 AC3 3 TYR A 180 GLN A 206 HOH A 778 CRYST1 53.917 73.884 96.876 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010322 0.00000