HEADER HYDROLASE 09-FEB-12 4DOD TITLE THE STRUCTURE OF CBESCII CELA GH9 MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,4-BETA-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBESCII CELA GH9 MODULE (UNP RESIDUES 1-452); COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR BESCII; SOURCE 3 ORGANISM_TAXID: 31899; SOURCE 4 GENE: CELA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELA, GH9, CELLULASE, (A/A)6 BARREL, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,V.V.LUNIN REVDAT 4 13-SEP-23 4DOD 1 REMARK SEQADV LINK REVDAT 3 08-JAN-14 4DOD 1 JRNL REVDAT 2 18-DEC-13 4DOD 1 JRNL REVDAT 1 20-FEB-13 4DOD 0 JRNL AUTH R.BRUNECKY,M.ALAHUHTA,Q.XU,B.S.DONOHOE,M.F.CROWLEY, JRNL AUTH 2 I.A.KATAEVA,S.J.YANG,M.G.RESCH,M.W.ADAMS,V.V.LUNIN, JRNL AUTH 3 M.E.HIMMEL,Y.J.BOMBLE JRNL TITL REVEALING NATURE'S CELLULASE DIVERSITY: THE DIGESTION JRNL TITL 2 MECHANISM OF CALDICELLULOSIRUPTOR BESCII CELA. JRNL REF SCIENCE V. 342 1513 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 24357319 JRNL DOI 10.1126/SCIENCE.1244273 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 76922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.758 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4119 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2755 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5604 ; 1.923 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6686 ; 1.043 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;37.793 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;13.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.563 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4698 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 907 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : HELIOS MIRRORS REMARK 200 OPTICS : HELIOS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81332 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.160 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12940 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.13 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63520 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M MES REMARK 280 MONOHYDRATE PH 6.5, 10% V/V 1,4-DIOXANE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.67233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.34467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.34467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.67233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 50 CE2 TRP A 50 CD2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 104 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 274 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 406 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 434 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 -120.94 -140.54 REMARK 500 HIS A 130 74.02 -117.79 REMARK 500 HIS A 130 69.54 -117.79 REMARK 500 LYS A 215 60.41 38.03 REMARK 500 TYR A 226 -61.84 -123.84 REMARK 500 TRP A 277 -138.75 -117.80 REMARK 500 THR A 313 -94.80 -117.41 REMARK 500 THR A 433 -164.97 -116.56 REMARK 500 ASP A 434 78.26 -151.38 REMARK 500 ASP A 434 78.26 -108.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 56 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 231 OG REMARK 620 2 GLY A 232 O 93.3 REMARK 620 3 ASP A 235 OD1 85.5 79.4 REMARK 620 4 ASP A 235 OD2 96.7 128.6 51.5 REMARK 620 5 GLU A 236 OE1 159.8 76.9 75.5 76.8 REMARK 620 6 GLU A 236 OE2 144.4 117.9 115.1 77.7 53.5 REMARK 620 7 ASP A 282 O 66.1 145.7 123.1 82.8 130.4 78.3 REMARK 620 8 HOH A 710 O 78.4 76.2 149.8 155.2 115.3 92.1 73.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 523 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 527 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DOE RELATED DB: PDB DBREF 4DOD A 24 475 UNP P96311 P96311_ANATH 1 452 SEQADV 4DOD MET A 1 UNP P96311 EXPRESSION TAG SEQADV 4DOD GLY A 2 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 3 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 4 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 5 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 6 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 7 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 8 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 9 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 10 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 11 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 12 UNP P96311 EXPRESSION TAG SEQADV 4DOD GLY A 13 UNP P96311 EXPRESSION TAG SEQADV 4DOD LEU A 14 UNP P96311 EXPRESSION TAG SEQADV 4DOD VAL A 15 UNP P96311 EXPRESSION TAG SEQADV 4DOD PRO A 16 UNP P96311 EXPRESSION TAG SEQADV 4DOD ARG A 17 UNP P96311 EXPRESSION TAG SEQADV 4DOD GLY A 18 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 19 UNP P96311 EXPRESSION TAG SEQADV 4DOD HIS A 20 UNP P96311 EXPRESSION TAG SEQADV 4DOD MET A 21 UNP P96311 EXPRESSION TAG SEQADV 4DOD ALA A 22 UNP P96311 EXPRESSION TAG SEQADV 4DOD SER A 23 UNP P96311 EXPRESSION TAG SEQADV 4DOD ALA A 176 UNP P96311 THR 153 CONFLICT SEQADV 4DOD THR A 313 UNP P96311 ILE 290 CONFLICT SEQRES 1 A 475 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 475 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY SER PHE SEQRES 3 A 475 ASN TYR GLY GLU ALA LEU GLN LYS ALA ILE MET PHE TYR SEQRES 4 A 475 GLU PHE GLN MET SER GLY LYS LEU PRO ASN TRP VAL ARG SEQRES 5 A 475 ASN ASN TRP ARG GLY ASP SER ALA LEU LYS ASP GLY GLN SEQRES 6 A 475 ASP ASN GLY LEU ASP LEU THR GLY GLY TRP PHE ASP ALA SEQRES 7 A 475 GLY ASP HIS VAL LYS PHE ASN LEU PRO MET SER TYR THR SEQRES 8 A 475 GLY THR MET LEU SER TRP ALA VAL TYR GLU TYR LYS ASP SEQRES 9 A 475 ALA PHE VAL LYS SER GLY GLN LEU GLU HIS ILE LEU ASN SEQRES 10 A 475 GLN ILE GLU TRP VAL ASN ASP TYR PHE VAL LYS CYS HIS SEQRES 11 A 475 PRO SER LYS TYR VAL TYR TYR TYR GLN VAL GLY ASP GLY SEQRES 12 A 475 SER LYS ASP HIS ALA TRP TRP GLY PRO ALA GLU VAL MET SEQRES 13 A 475 GLN MET GLU ARG PRO SER PHE LYS VAL THR GLN SER SER SEQRES 14 A 475 PRO GLY SER THR VAL VAL ALA GLU THR ALA ALA SER LEU SEQRES 15 A 475 ALA ALA ALA SER ILE VAL LEU LYS ASP ARG ASN PRO THR SEQRES 16 A 475 LYS ALA ALA THR TYR LEU GLN HIS ALA LYS GLU LEU TYR SEQRES 17 A 475 GLU PHE ALA GLU VAL THR LYS SER ASP ALA GLY TYR THR SEQRES 18 A 475 ALA ALA ASN GLY TYR TYR ASN SER TRP SER GLY PHE TYR SEQRES 19 A 475 ASP GLU LEU SER TRP ALA ALA VAL TRP LEU TYR LEU ALA SEQRES 20 A 475 THR ASN ASP SER THR TYR LEU THR LYS ALA GLU SER TYR SEQRES 21 A 475 VAL GLN ASN TRP PRO LYS ILE SER GLY SER ASN THR ILE SEQRES 22 A 475 ASP TYR LYS TRP ALA HIS CYS TRP ASP ASP VAL HIS ASN SEQRES 23 A 475 GLY ALA ALA LEU LEU LEU ALA LYS ILE THR GLY LYS ASP SEQRES 24 A 475 ILE TYR LYS GLN ILE ILE GLU SER HIS LEU ASP TYR TRP SEQRES 25 A 475 THR THR GLY TYR ASN GLY GLU ARG ILE LYS TYR THR PRO SEQRES 26 A 475 LYS GLY LEU ALA TRP LEU ASP GLN TRP GLY SER LEU ARG SEQRES 27 A 475 TYR ALA THR THR THR ALA PHE LEU ALA PHE VAL TYR SER SEQRES 28 A 475 ASP TRP VAL GLY CYS PRO SER THR LYS LYS GLU ILE TYR SEQRES 29 A 475 ARG LYS PHE GLY GLU SER GLN ILE ASP TYR ALA LEU GLY SEQRES 30 A 475 SER ALA GLY ARG SER PHE VAL VAL GLY PHE GLY THR ASN SEQRES 31 A 475 PRO PRO LYS ARG PRO HIS HIS ARG THR ALA HIS SER SER SEQRES 32 A 475 TRP ALA ASP SER GLN SER ILE PRO SER TYR HIS ARG HIS SEQRES 33 A 475 THR LEU TYR GLY ALA LEU VAL GLY GLY PRO GLY SER ASP SEQRES 34 A 475 ASP SER TYR THR ASP ASP ILE SER ASN TYR VAL ASN ASN SEQRES 35 A 475 GLU VAL ALA CYS ASP TYR ASN ALA GLY PHE VAL GLY ALA SEQRES 36 A 475 LEU ALA LYS MET TYR GLN LEU TYR GLY GLY ASN PRO ILE SEQRES 37 A 475 PRO ASP PHE LYS ALA ILE GLU HET DIO A 501 6 HET CA A 502 1 HET EDO A 503 8 HET EDO A 504 4 HET EDO A 505 8 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 8 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET GOL A 514 6 HET GOL A 515 6 HET GOL A 516 6 HET GOL A 517 6 HET GOL A 518 6 HET GOL A 519 6 HET GOL A 520 6 HET GOL A 521 6 HET GOL A 522 6 HET GOL A 523 6 HET SO4 A 524 5 HET SO4 A 525 5 HET SO4 A 526 5 HET SO4 A 527 5 HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DIO C4 H8 O2 FORMUL 3 CA CA 2+ FORMUL 4 EDO 11(C2 H6 O2) FORMUL 15 GOL 10(C3 H8 O3) FORMUL 25 SO4 4(O4 S 2-) FORMUL 29 HOH *614(H2 O) HELIX 1 1 ASN A 27 GLN A 42 1 16 HELIX 2 2 GLY A 64 GLY A 68 5 5 HELIX 3 3 ASN A 85 SER A 109 1 25 HELIX 4 4 GLN A 111 CYS A 129 1 19 HELIX 5 5 ASP A 142 ALA A 148 1 7 HELIX 6 6 PRO A 152 MET A 156 5 5 HELIX 7 7 GLY A 171 LEU A 189 1 19 HELIX 8 8 ASN A 193 LYS A 215 1 23 HELIX 9 9 PHE A 233 ASN A 249 1 17 HELIX 10 10 ASP A 250 TYR A 260 1 11 HELIX 11 11 VAL A 261 TRP A 264 5 4 HELIX 12 12 VAL A 284 GLY A 297 1 14 HELIX 13 13 LYS A 298 THR A 313 1 16 HELIX 14 14 GLY A 335 ASP A 352 1 18 HELIX 15 15 PRO A 357 GLY A 377 1 21 HELIX 16 16 HIS A 397 SER A 402 1 6 HELIX 17 17 ALA A 445 GLY A 464 1 20 SHEET 1 A 3 LYS A 83 PHE A 84 0 SHEET 2 A 3 VAL A 135 VAL A 140 -1 O VAL A 140 N LYS A 83 SHEET 3 A 3 SER A 162 THR A 166 -1 O VAL A 165 N TYR A 136 LINK OG SER A 231 CA CA A 502 1555 1555 2.50 LINK O GLY A 232 CA CA A 502 1555 1555 2.41 LINK OD1 ASP A 235 CA CA A 502 1555 1555 2.54 LINK OD2 ASP A 235 CA CA A 502 1555 1555 2.54 LINK OE1 GLU A 236 CA CA A 502 1555 1555 2.45 LINK OE2 GLU A 236 CA CA A 502 1555 1555 2.51 LINK O ASP A 282 CA CA A 502 1555 1555 2.40 LINK CA CA A 502 O HOH A 710 1555 1555 2.34 CISPEP 1 ILE A 410 PRO A 411 0 -1.63 SITE 1 AC1 7 LYS A 34 TYR A 419 SER A 437 ASN A 438 SITE 2 AC1 7 TYR A 439 ILE A 468 PHE A 471 SITE 1 AC2 6 SER A 231 GLY A 232 ASP A 235 GLU A 236 SITE 2 AC2 6 ASP A 282 HOH A 710 SITE 1 AC3 7 TRP A 277 TRP A 281 ASP A 282 TYR A 339 SITE 2 AC3 7 EDO A 508 EDO A 513 HOH A1199 SITE 1 AC4 6 ARG A 415 THR A 433 ASP A 434 HOH A 698 SITE 2 AC4 6 HOH A 761 HOH A 847 SITE 1 AC5 8 THR A 195 ALA A 198 THR A 199 GLN A 202 SITE 2 AC5 8 HOH A 666 HOH A 829 HOH A1043 HOH A1129 SITE 1 AC6 7 ASP A 70 VAL A 135 HOH A 693 HOH A 744 SITE 2 AC6 7 HOH A 950 HOH A1015 HOH A1212 SITE 1 AC7 2 THR A 255 SER A 259 SITE 1 AC8 8 TRP A 281 TRP A 334 ARG A 338 TYR A 448 SITE 2 AC8 8 EDO A 503 EDO A 513 HOH A 732 HOH A1156 SITE 1 AC9 7 LYS A 103 VAL A 188 EDO A 512 HOH A 655 SITE 2 AC9 7 HOH A 736 HOH A 889 HOH A1195 SITE 1 BC1 4 LYS A 103 GOL A 519 HOH A1196 HOH A1202 SITE 1 BC2 8 SER A 216 ASP A 217 ALA A 218 PHE A 233 SITE 2 BC2 8 HOH A 811 HOH A1112 HOH A1177 HOH A1208 SITE 1 BC3 11 LYS A 103 LEU A 112 LEU A 116 ASP A 191 SITE 2 BC3 11 ARG A 192 EDO A 509 GOL A 519 HOH A 625 SITE 3 BC3 11 HOH A1195 HOH A1197 HOH A1202 SITE 1 BC4 5 TRP A 334 EDO A 503 EDO A 508 HOH A1156 SITE 2 BC4 5 HOH A1189 SITE 1 BC5 9 SER A 186 LYS A 190 ALA A 198 ALA A 247 SITE 2 BC5 9 HOH A 733 HOH A 898 HOH A 907 HOH A1004 SITE 3 BC5 9 HOH A1006 SITE 1 BC6 11 LYS A 256 GLN A 262 ILE A 273 ILE A 300 SITE 2 BC6 11 HOH A 720 HOH A 752 HOH A 892 HOH A1182 SITE 3 BC6 11 HOH A1184 HOH A1185 HOH A1186 SITE 1 BC7 5 ASP A 274 TRP A 277 HOH A1163 HOH A1210 SITE 2 BC7 5 HOH A1211 SITE 1 BC8 8 ASP A 80 HIS A 147 HIS A 396 ARG A 398 SITE 2 BC8 8 TYR A 439 GLU A 443 HOH A1147 HOH A1161 SITE 1 BC9 4 PRO A 357 SER A 358 HOH A 841 HOH A1187 SITE 1 CC1 11 GLU A 113 LEU A 116 ARG A 192 EDO A 510 SITE 2 CC1 11 EDO A 512 HOH A1107 HOH A1169 HOH A1196 SITE 3 CC1 11 HOH A1197 HOH A1200 HOH A1201 SITE 1 CC2 6 LYS A 145 MET A 158 GLU A 159 HOH A1119 SITE 2 CC2 6 HOH A1172 HOH A1190 SITE 1 CC3 11 PRO A 152 THR A 324 PRO A 325 SER A 403 SITE 2 CC3 11 TRP A 404 ARG A 415 HOH A 804 HOH A 807 SITE 3 CC3 11 HOH A 994 HOH A1035 HOH A1168 SITE 1 CC4 6 LYS A 298 ASP A 299 ILE A 300 HOH A1050 SITE 2 CC4 6 HOH A1052 HOH A1166 SITE 1 CC5 7 SER A 23 GLY A 24 SER A 25 TYR A 28 SITE 2 CC5 7 ASP A 373 TYR A 463 HOH A 777 SITE 1 CC6 10 TRP A 330 GLN A 333 ASN A 390 PRO A 391 SITE 2 CC6 10 LYS A 393 GLY A 427 SER A 428 HOH A 904 SITE 3 CC6 10 HOH A 984 HOH A1096 SITE 1 CC7 8 PRO A 411 SER A 412 TYR A 413 ARG A 415 SITE 2 CC7 8 TYR A 432 HOH A1080 HOH A1178 HOH A1179 SITE 1 CC8 4 GLN A 303 TYR A 316 HOH A 678 HOH A 925 SITE 1 CC9 7 ASN A 49 TRP A 50 VAL A 51 ARG A 52 SITE 2 CC9 7 LYS A 472 HOH A 673 HOH A 976 CRYST1 147.732 147.732 59.017 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006769 0.003908 0.000000 0.00000 SCALE2 0.000000 0.007816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016944 0.00000