HEADER TRANSFERASE 14-FEB-12 4DQ1 TITLE THYMIDYLATE SYNTHASE FROM STAPHYLOCOCCUS AUREUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: SUBSP. AUREUS MU50; SOURCE 5 GENE: SAV1427, THYA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY KEYWDS 3 TO KNOWN MTB INHIBITORS, MTBI, THYMIDYLATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,J.HOLOWICKI,R.JEDRZEJCZAK,E.RUBIN,K.GUINN,T.IOERGER, AUTHOR 2 D.BAKER,J.SACCHETTINI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY AUTHOR 4 TO KNOWN MTB INHIBITORS (MTBI) REVDAT 3 13-SEP-23 4DQ1 1 REMARK SEQADV REVDAT 2 15-NOV-17 4DQ1 1 REMARK REVDAT 1 21-MAR-12 4DQ1 0 JRNL AUTH J.OSIPIUK,J.HOLOWICKI,R.JEDRZEJCZAK,E.RUBIN,K.GUINN, JRNL AUTH 2 T.IOERGER,D.BAKER,J.SACCHETTINI,A.JOACHIMIAK JRNL TITL THYMIDYLATE SYNTHASE FROM STAPHYLOCOCCUS AUREUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : 3.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5200 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7049 ; 1.633 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 7.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;38.713 ;25.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 873 ;18.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4030 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8605 3.5470 12.3013 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.2456 REMARK 3 T33: 0.1334 T12: 0.0251 REMARK 3 T13: -0.0338 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.6098 L22: 1.8939 REMARK 3 L33: 0.3866 L12: 0.7041 REMARK 3 L13: -0.3091 L23: -0.7067 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.1576 S13: 0.0381 REMARK 3 S21: 0.1823 S22: -0.0864 S23: -0.2636 REMARK 3 S31: -0.0312 S32: 0.0040 S33: 0.1329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 47.7553 26.8098 0.1936 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1770 REMARK 3 T33: 0.5207 T12: 0.0116 REMARK 3 T13: 0.0048 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.0321 L22: 1.9865 REMARK 3 L33: 1.2873 L12: 0.9725 REMARK 3 L13: -0.2186 L23: -0.7236 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.1806 S13: 0.3367 REMARK 3 S21: 0.0082 S22: -0.1474 S23: -0.6071 REMARK 3 S31: -0.2351 S32: -0.0371 S33: 0.1018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3IK0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M SODIUM CHLORIDE, 0.1 M MES:NAOH REMARK 280 BUFFER, 20% PEG-4000, 10 MM DUMP, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.54050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.31075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.77025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 PRO A 315 REMARK 465 ILE A 316 REMARK 465 ALA A 317 REMARK 465 VAL A 318 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 105 REMARK 465 ASP B 106 REMARK 465 PHE B 107 REMARK 465 GLY B 108 REMARK 465 HIS B 109 REMARK 465 ARG B 110 REMARK 465 ALA B 111 REMARK 465 LEU B 112 REMARK 465 SER B 113 REMARK 465 ASP B 114 REMARK 465 PRO B 115 REMARK 465 GLU B 116 REMARK 465 PRO B 315 REMARK 465 ILE B 316 REMARK 465 ALA B 317 REMARK 465 VAL B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 66 CE2 TRP A 66 CD2 0.080 REMARK 500 TRP A 85 CE2 TRP A 85 CD2 0.073 REMARK 500 TRP B 188 CE2 TRP B 188 CD2 0.072 REMARK 500 HIS B 256 CG HIS B 256 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 6 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 -71.94 -75.85 REMARK 500 ILE A 94 6.62 -67.23 REMARK 500 ASN A 100 62.39 -111.08 REMARK 500 ASP A 106 72.96 33.86 REMARK 500 LEU A 145 -167.45 -102.26 REMARK 500 ASP A 155 77.75 -164.80 REMARK 500 LYS A 159 -39.95 -35.11 REMARK 500 ASN A 177 58.15 -149.30 REMARK 500 ALA A 197 -76.64 -39.79 REMARK 500 ASN A 288 62.68 -100.37 REMARK 500 ILE B 84 -45.04 -29.65 REMARK 500 ASN B 100 55.57 -117.23 REMARK 500 ALA B 197 -77.41 -46.61 REMARK 500 ASP B 211 58.72 38.03 REMARK 500 PRO B 283 -179.68 -68.81 REMARK 500 ILE B 293 -7.39 -58.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC105752 RELATED DB: TARGETTRACK DBREF 4DQ1 A 1 318 UNP P67046 TYSY_STAAM 1 318 DBREF 4DQ1 B 1 318 UNP P67046 TYSY_STAAM 1 318 SEQADV 4DQ1 SER A -2 UNP P67046 EXPRESSION TAG SEQADV 4DQ1 ASN A -1 UNP P67046 EXPRESSION TAG SEQADV 4DQ1 ALA A 0 UNP P67046 EXPRESSION TAG SEQADV 4DQ1 SER B -2 UNP P67046 EXPRESSION TAG SEQADV 4DQ1 ASN B -1 UNP P67046 EXPRESSION TAG SEQADV 4DQ1 ALA B 0 UNP P67046 EXPRESSION TAG SEQRES 1 A 321 SER ASN ALA MET LEU ASN SER PHE ASP ALA ALA TYR HIS SEQRES 2 A 321 SER LEU CYS GLU GLU VAL LEU GLU ILE GLY ASN THR ARG SEQRES 3 A 321 ASN ASP ARG THR ASN THR GLY THR ILE SER LYS PHE GLY SEQRES 4 A 321 HIS GLN LEU ARG PHE ASP LEU SER LYS GLY PHE PRO LEU SEQRES 5 A 321 LEU THR THR LYS LYS VAL SER PHE LYS LEU VAL ALA THR SEQRES 6 A 321 GLU LEU LEU TRP PHE ILE LYS GLY ASP THR ASN ILE GLN SEQRES 7 A 321 TYR LEU LEU LYS TYR ASN ASN ASN ILE TRP ASN GLU TRP SEQRES 8 A 321 ALA PHE GLU ASN TYR ILE LYS SER ASP GLU TYR ASN GLY SEQRES 9 A 321 PRO ASP MET THR ASP PHE GLY HIS ARG ALA LEU SER ASP SEQRES 10 A 321 PRO GLU PHE ASN GLU GLN TYR LYS GLU GLN MET LYS GLN SEQRES 11 A 321 PHE LYS GLN ARG ILE LEU GLU ASP ASP THR PHE ALA LYS SEQRES 12 A 321 GLN PHE GLY ASP LEU GLY ASN VAL TYR GLY LYS GLN TRP SEQRES 13 A 321 ARG ASP TRP VAL ASP LYS ASP GLY ASN HIS PHE ASP GLN SEQRES 14 A 321 LEU LYS THR VAL ILE GLU GLN ILE LYS HIS ASN PRO ASP SEQRES 15 A 321 SER ARG ARG HIS ILE VAL SER ALA TRP ASN PRO THR GLU SEQRES 16 A 321 ILE ASP THR MET ALA LEU PRO PRO CYS HIS THR MET PHE SEQRES 17 A 321 GLN PHE TYR VAL GLN ASP GLY LYS LEU SER CYS GLN LEU SEQRES 18 A 321 TYR GLN ARG SER ALA ASP ILE PHE LEU GLY VAL PRO PHE SEQRES 19 A 321 ASN ILE ALA SER TYR ALA LEU LEU THR HIS LEU ILE ALA SEQRES 20 A 321 LYS GLU CYS GLY LEU GLU VAL GLY GLU PHE VAL HIS THR SEQRES 21 A 321 PHE GLY ASP ALA HIS ILE TYR SER ASN HIS ILE ASP ALA SEQRES 22 A 321 ILE GLN THR GLN LEU ALA ARG GLU SER PHE ASN PRO PRO SEQRES 23 A 321 THR LEU LYS ILE ASN SER ASP LYS SER ILE PHE ASP ILE SEQRES 24 A 321 ASN TYR GLU ASP LEU GLU ILE VAL ASP TYR GLU SER HIS SEQRES 25 A 321 PRO ALA ILE LYS ALA PRO ILE ALA VAL SEQRES 1 B 321 SER ASN ALA MET LEU ASN SER PHE ASP ALA ALA TYR HIS SEQRES 2 B 321 SER LEU CYS GLU GLU VAL LEU GLU ILE GLY ASN THR ARG SEQRES 3 B 321 ASN ASP ARG THR ASN THR GLY THR ILE SER LYS PHE GLY SEQRES 4 B 321 HIS GLN LEU ARG PHE ASP LEU SER LYS GLY PHE PRO LEU SEQRES 5 B 321 LEU THR THR LYS LYS VAL SER PHE LYS LEU VAL ALA THR SEQRES 6 B 321 GLU LEU LEU TRP PHE ILE LYS GLY ASP THR ASN ILE GLN SEQRES 7 B 321 TYR LEU LEU LYS TYR ASN ASN ASN ILE TRP ASN GLU TRP SEQRES 8 B 321 ALA PHE GLU ASN TYR ILE LYS SER ASP GLU TYR ASN GLY SEQRES 9 B 321 PRO ASP MET THR ASP PHE GLY HIS ARG ALA LEU SER ASP SEQRES 10 B 321 PRO GLU PHE ASN GLU GLN TYR LYS GLU GLN MET LYS GLN SEQRES 11 B 321 PHE LYS GLN ARG ILE LEU GLU ASP ASP THR PHE ALA LYS SEQRES 12 B 321 GLN PHE GLY ASP LEU GLY ASN VAL TYR GLY LYS GLN TRP SEQRES 13 B 321 ARG ASP TRP VAL ASP LYS ASP GLY ASN HIS PHE ASP GLN SEQRES 14 B 321 LEU LYS THR VAL ILE GLU GLN ILE LYS HIS ASN PRO ASP SEQRES 15 B 321 SER ARG ARG HIS ILE VAL SER ALA TRP ASN PRO THR GLU SEQRES 16 B 321 ILE ASP THR MET ALA LEU PRO PRO CYS HIS THR MET PHE SEQRES 17 B 321 GLN PHE TYR VAL GLN ASP GLY LYS LEU SER CYS GLN LEU SEQRES 18 B 321 TYR GLN ARG SER ALA ASP ILE PHE LEU GLY VAL PRO PHE SEQRES 19 B 321 ASN ILE ALA SER TYR ALA LEU LEU THR HIS LEU ILE ALA SEQRES 20 B 321 LYS GLU CYS GLY LEU GLU VAL GLY GLU PHE VAL HIS THR SEQRES 21 B 321 PHE GLY ASP ALA HIS ILE TYR SER ASN HIS ILE ASP ALA SEQRES 22 B 321 ILE GLN THR GLN LEU ALA ARG GLU SER PHE ASN PRO PRO SEQRES 23 B 321 THR LEU LYS ILE ASN SER ASP LYS SER ILE PHE ASP ILE SEQRES 24 B 321 ASN TYR GLU ASP LEU GLU ILE VAL ASP TYR GLU SER HIS SEQRES 25 B 321 PRO ALA ILE LYS ALA PRO ILE ALA VAL HET UMP A 501 20 HET UMP B 501 20 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 3 UMP 2(C9 H13 N2 O8 P) FORMUL 5 HOH *26(H2 O) HELIX 1 1 ASN A 3 GLY A 20 1 18 HELIX 2 2 SER A 44 GLY A 46 5 3 HELIX 3 3 SER A 56 GLY A 70 1 15 HELIX 4 4 ASN A 73 LYS A 79 1 7 HELIX 5 5 TRP A 85 ILE A 94 1 10 HELIX 6 6 GLY A 108 ASP A 114 1 7 HELIX 7 7 GLU A 116 ASP A 135 1 20 HELIX 8 8 ASP A 135 GLY A 143 1 9 HELIX 9 9 VAL A 148 ASP A 155 1 8 HELIX 10 10 ASP A 165 ASN A 177 1 13 HELIX 11 11 ASN A 189 ILE A 193 5 5 HELIX 12 12 LEU A 227 CYS A 247 1 21 HELIX 13 13 HIS A 267 ARG A 277 1 11 HELIX 14 14 SER A 292 ILE A 296 5 5 HELIX 15 15 ASN A 297 GLU A 299 5 3 HELIX 16 16 SER B 4 GLY B 20 1 17 HELIX 17 17 SER B 44 GLY B 46 5 3 HELIX 18 18 SER B 56 LYS B 69 1 14 HELIX 19 19 ILE B 74 TYR B 80 1 7 HELIX 20 20 TRP B 85 ILE B 94 1 10 HELIX 21 21 ASN B 118 ASP B 135 1 18 HELIX 22 22 ASP B 135 GLY B 143 1 9 HELIX 23 23 VAL B 148 ASP B 155 1 8 HELIX 24 24 ASP B 165 ASN B 177 1 13 HELIX 25 25 GLY B 228 CYS B 247 1 20 HELIX 26 26 HIS B 267 ALA B 276 1 10 HELIX 27 27 ASN B 297 GLU B 299 5 3 SHEET 1 A 6 ASN A 21 ARG A 23 0 SHEET 2 A 6 THR A 31 ASP A 42 -1 O THR A 31 N ARG A 23 SHEET 3 A 6 GLU A 250 TYR A 264 -1 O HIS A 256 N LEU A 39 SHEET 4 A 6 LYS A 213 ASP A 224 1 N LEU A 214 O GLY A 252 SHEET 5 A 6 HIS A 202 GLN A 210 -1 N TYR A 208 O SER A 215 SHEET 6 A 6 ILE A 184 SER A 186 -1 N VAL A 185 O PHE A 205 SHEET 1 B 2 TRP A 156 VAL A 157 0 SHEET 2 B 2 HIS A 163 PHE A 164 -1 O PHE A 164 N TRP A 156 SHEET 1 C 2 THR A 284 ILE A 287 0 SHEET 2 C 2 LEU A 301 VAL A 304 -1 O VAL A 304 N THR A 284 SHEET 1 D 6 ASN B 21 ARG B 23 0 SHEET 2 D 6 THR B 31 ASP B 42 -1 O THR B 31 N ARG B 23 SHEET 3 D 6 GLU B 250 TYR B 264 -1 O GLY B 259 N GLY B 36 SHEET 4 D 6 LYS B 213 ASP B 224 1 N LEU B 214 O GLY B 252 SHEET 5 D 6 HIS B 202 GLN B 210 -1 N TYR B 208 O SER B 215 SHEET 6 D 6 ILE B 184 SER B 186 -1 N VAL B 185 O PHE B 205 SHEET 1 E 2 TRP B 156 VAL B 157 0 SHEET 2 E 2 HIS B 163 PHE B 164 -1 O PHE B 164 N TRP B 156 SHEET 1 F 2 THR B 284 ILE B 287 0 SHEET 2 F 2 LEU B 301 VAL B 304 -1 O VAL B 304 N THR B 284 SITE 1 AC1 13 ARG A 26 CYS A 201 HIS A 202 GLN A 220 SITE 2 AC1 13 ARG A 221 SER A 222 ALA A 223 ASP A 224 SITE 3 AC1 13 ASN A 232 HIS A 262 TYR A 264 ARG B 181 SITE 4 AC1 13 ARG B 182 SITE 1 AC2 13 ARG A 181 ARG A 182 ARG B 26 CYS B 201 SITE 2 AC2 13 HIS B 202 GLN B 220 ARG B 221 SER B 222 SITE 3 AC2 13 ALA B 223 ASP B 224 ASN B 232 HIS B 262 SITE 4 AC2 13 TYR B 264 CRYST1 111.309 111.309 59.081 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016926 0.00000