HEADER LIGASE 14-FEB-12 4DQ2 TITLE STRUCTURE OF STAPHYLOCOCCUS AUREUS BIOTIN PROTEIN LIGASE IN COMPLEX TITLE 2 WITH BIOTINOL-5'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.4.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 889933; SOURCE 4 STRAIN: ECT-R 2; SOURCE 5 GENE: ECTR2_1310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING DOMAIN, METABOLISM, BIOTIN, LIGATE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WILCE,M.YAP,N.PENDINI,T.SOARES DE COSTA,S.POLYAK,W.TIEU,G.BOOKER, AUTHOR 2 J.WALLACE REVDAT 3 20-MAR-24 4DQ2 1 REMARK SEQADV REVDAT 2 17-JUL-13 4DQ2 1 JRNL REVDAT 1 18-APR-12 4DQ2 0 JRNL AUTH T.P.SOARES DA COSTA,W.TIEU,M.Y.YAP,N.R.PENDINI,S.W.POLYAK, JRNL AUTH 2 D.SEJER PEDERSEN,R.MORONA,J.D.TURNIDGE,J.C.WALLACE, JRNL AUTH 3 M.C.WILCE,G.W.BOOKER,A.D.ABELL JRNL TITL SELECTIVE INHIBITION OF BIOTIN PROTEIN LIGASE FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 287 17823 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22437830 JRNL DOI 10.1074/JBC.M112.356576 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2704 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3651 ; 2.214 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 7.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;39.247 ;24.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;18.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1596 ; 1.057 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 2.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 3.553 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1079 ; 5.624 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1910 24.2820 45.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1082 REMARK 3 T33: 0.0970 T12: 0.0639 REMARK 3 T13: 0.0330 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 2.5985 L22: 4.4687 REMARK 3 L33: 2.0527 L12: -1.9245 REMARK 3 L13: -1.8113 L23: 1.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: -0.1255 S13: 0.1563 REMARK 3 S21: -0.2026 S22: 0.0216 S23: -0.0875 REMARK 3 S31: -0.0658 S32: -0.0257 S33: -0.1632 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9530 17.5190 19.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1422 REMARK 3 T33: 0.1053 T12: 0.0060 REMARK 3 T13: 0.0515 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 0.6499 L22: 1.1144 REMARK 3 L33: 1.3898 L12: 0.1739 REMARK 3 L13: -0.3488 L23: -0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: 0.1023 S13: 0.0416 REMARK 3 S21: 0.0474 S22: 0.1377 S23: 0.0954 REMARK 3 S31: -0.2123 S32: -0.1324 S33: -0.2099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 53.5620 16.4060 -0.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1911 REMARK 3 T33: 0.0382 T12: -0.0714 REMARK 3 T13: 0.0498 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.9527 L22: 1.1486 REMARK 3 L33: 6.2843 L12: 0.0301 REMARK 3 L13: -1.5649 L23: 0.5416 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.2716 S13: -0.0652 REMARK 3 S21: -0.1222 S22: 0.1168 S23: -0.0058 REMARK 3 S31: -0.0551 S32: 0.1363 S33: -0.1128 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7430 19.6910 21.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1001 REMARK 3 T33: 0.3198 T12: -0.0237 REMARK 3 T13: 0.0840 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 5.1486 L22: 2.2817 REMARK 3 L33: 14.9539 L12: 2.2322 REMARK 3 L13: 7.6179 L23: 5.4608 REMARK 3 S TENSOR REMARK 3 S11: -0.4417 S12: 0.2560 S13: 0.3605 REMARK 3 S21: -0.0362 S22: 0.3006 S23: -0.1091 REMARK 3 S31: -0.4053 S32: 0.6210 S33: 0.1411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M TRIS-HCL PH 7.5, REMARK 280 10% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.29900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.29900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.31300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.29900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.29900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.31300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.29900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.29900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.31300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.29900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.29900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.31300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 94.59800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 272 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 616 O HOH A 682 1.78 REMARK 500 O HOH A 620 O HOH A 650 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 LEU A 239 CA - CB - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP A 320 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 55 -13.43 79.76 REMARK 500 SER A 93 134.89 -170.57 REMARK 500 ASP A 184 -124.36 54.08 REMARK 500 ASN A 287 -114.57 50.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTX A 500 DBREF 4DQ2 A 2 323 UNP E5R5T0 E5R5T0_STAAG 2 323 SEQADV 4DQ2 HIS A 324 UNP E5R5T0 EXPRESSION TAG SEQADV 4DQ2 HIS A 325 UNP E5R5T0 EXPRESSION TAG SEQADV 4DQ2 HIS A 326 UNP E5R5T0 EXPRESSION TAG SEQADV 4DQ2 HIS A 327 UNP E5R5T0 EXPRESSION TAG SEQADV 4DQ2 HIS A 328 UNP E5R5T0 EXPRESSION TAG SEQADV 4DQ2 HIS A 329 UNP E5R5T0 EXPRESSION TAG SEQRES 1 A 328 SER LYS TYR SER GLN ASP VAL LEU GLN LEU LEU TYR LYS SEQRES 2 A 328 ASN LYS PRO ASN TYR ILE SER GLY GLN SER ILE ALA GLU SEQRES 3 A 328 SER LEU ASN ILE SER ARG THR ALA VAL LYS LYS VAL ILE SEQRES 4 A 328 ASP GLN LEU LYS LEU GLU GLY CYS LYS ILE ASP SER VAL SEQRES 5 A 328 ASN HIS LYS GLY HIS LEU LEU GLN GLN LEU PRO ASP ILE SEQRES 6 A 328 TRP TYR GLN GLY ILE ILE ASP GLN TYR THR LYS SER SER SEQRES 7 A 328 ALA LEU PHE ASP PHE SER GLU VAL TYR ASP SER ILE ASP SEQRES 8 A 328 SER THR GLN LEU ALA ALA LYS LYS SER LEU VAL GLY ASN SEQRES 9 A 328 GLN SER SER PHE PHE ILE LEU SER ASP GLU GLN THR LYS SEQRES 10 A 328 GLY ARG GLY ARG PHE ASN ARG HIS TRP SER SER SER LYS SEQRES 11 A 328 GLY GLN GLY LEU TRP MET SER VAL VAL LEU ARG PRO ASN SEQRES 12 A 328 VAL ALA PHE SER MET ILE SER LYS PHE ASN LEU PHE ILE SEQRES 13 A 328 ALA LEU GLY ILE ARG ASP ALA ILE GLN HIS PHE SER GLN SEQRES 14 A 328 ASP GLU VAL LYS VAL LYS TRP PRO ASN ASP ILE TYR ILE SEQRES 15 A 328 ASP ASN GLY LYS VAL CYS GLY PHE LEU THR GLU MET VAL SEQRES 16 A 328 ALA ASN ASN ASP GLY ILE GLU ALA ILE ILE CYS GLY ILE SEQRES 17 A 328 GLY ILE ASN LEU THR GLN GLN LEU GLU ASN PHE ASP GLU SEQRES 18 A 328 SER ILE ARG HIS ARG ALA THR SER ILE GLN LEU HIS ASP SEQRES 19 A 328 LYS ASN LYS LEU ASP ARG TYR GLN PHE LEU GLU ARG LEU SEQRES 20 A 328 LEU GLN GLU ILE GLU LYS ARG TYR ASN GLN PHE LEU THR SEQRES 21 A 328 LEU PRO PHE SER GLU ILE ARG GLU GLU TYR ILE ALA ALA SEQRES 22 A 328 SER ASN ILE TRP ASN ARG THR LEU LEU PHE THR GLU ASN SEQRES 23 A 328 ASP LYS GLN PHE LYS GLY GLN ALA ILE ASP LEU ASP TYR SEQRES 24 A 328 ASP GLY TYR LEU ILE VAL ARG ASP GLU ALA GLY GLU SER SEQRES 25 A 328 HIS ARG LEU ILE SER ALA ASP ILE ASP PHE HIS HIS HIS SEQRES 26 A 328 HIS HIS HIS HET BTX A 500 37 HETNAM BTX ((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 BTX TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO- HETNAM 3 BTX HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HETNAM 4 BTX HYDROGEN PHOSPHATE HETSYN BTX BIOTINOL-5-AMP FORMUL 2 BTX C20 H30 N7 O8 P S FORMUL 3 HOH *105(H2 O) HELIX 1 1 TYR A 4 LYS A 16 1 13 HELIX 2 2 SER A 21 ASN A 30 1 10 HELIX 3 3 SER A 32 GLU A 46 1 15 HELIX 4 4 TYR A 68 SER A 78 1 11 HELIX 5 5 SER A 93 LEU A 102 1 10 HELIX 6 6 GLY A 121 ARG A 125 5 5 HELIX 7 7 ALA A 146 SER A 148 5 3 HELIX 8 8 MET A 149 HIS A 167 1 19 HELIX 9 9 GLN A 216 PHE A 220 5 5 HELIX 10 10 ASP A 221 HIS A 226 1 6 HELIX 11 11 SER A 230 ASP A 235 5 6 HELIX 12 12 ASP A 240 LEU A 262 1 23 HELIX 13 13 PHE A 264 ALA A 274 1 11 SHEET 1 A 2 LYS A 49 VAL A 53 0 SHEET 2 A 2 GLY A 57 GLN A 62 -1 O GLN A 61 N LYS A 49 SHEET 1 B 7 PHE A 84 ILE A 91 0 SHEET 2 B 7 PHE A 109 GLN A 116 1 O LEU A 112 N GLU A 86 SHEET 3 B 7 GLY A 134 LEU A 141 -1 O VAL A 140 N PHE A 109 SHEET 4 B 7 GLY A 201 ASN A 212 -1 O ILE A 209 N MET A 137 SHEET 5 B 7 GLY A 186 ASN A 198 -1 N VAL A 188 O ASN A 212 SHEET 6 B 7 ASP A 180 ILE A 183 -1 N ILE A 183 O GLY A 186 SHEET 7 B 7 VAL A 173 LYS A 176 -1 N LYS A 174 O TYR A 182 SHEET 1 C 5 SER A 313 LEU A 316 0 SHEET 2 C 5 LEU A 304 ASP A 308 -1 N LEU A 304 O LEU A 316 SHEET 3 C 5 LYS A 289 LEU A 298 -1 N ASP A 297 O ILE A 305 SHEET 4 C 5 LEU A 282 GLU A 286 -1 N PHE A 284 O PHE A 291 SHEET 5 C 5 ASP A 320 ASP A 322 -1 O ASP A 322 N LEU A 283 CISPEP 1 LYS A 16 PRO A 17 0 -3.46 CISPEP 2 TRP A 177 PRO A 178 0 -3.73 SITE 1 AC1 21 SER A 93 THR A 94 GLN A 116 GLY A 119 SITE 2 AC1 21 ARG A 120 GLY A 121 ARG A 122 ARG A 125 SITE 3 AC1 21 HIS A 126 TRP A 127 SER A 128 MET A 137 SITE 4 AC1 21 ASP A 180 LYS A 187 GLY A 190 ILE A 209 SITE 5 AC1 21 GLY A 210 ASN A 212 ILE A 224 ARG A 227 SITE 6 AC1 21 ALA A 228 CRYST1 94.598 94.598 130.626 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007655 0.00000