HEADER HYDROLASE 16-FEB-12 4DQJ TITLE STRUCTURAL INVESTIGATION OF BACTERIOPHAGE PHI6 LYSIN (IN COMPLEX WITH TITLE 2 CHITOTETRAOSE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN PHI6 P5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 48-220; COMPND 5 SYNONYM: P5A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHI6; SOURCE 3 ORGANISM_TAXID: 10879; SOURCE 4 GENE: P5, P5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS LYSIN, TRANSGLYCOSYLASE, THERMOTOLERANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DESSAU,Y.MODIS REVDAT 4 28-FEB-24 4DQJ 1 HETSYN REVDAT 3 29-JUL-20 4DQJ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 01-FEB-17 4DQJ 1 JRNL REVDAT 1 02-JAN-13 4DQJ 0 JRNL AUTH M.DESSAU,D.GOLDHILL,R.MCBRIDE,R.L.MCBRIDE,P.E.TURNER,Y.MODIS JRNL TITL SELECTIVE PRESSURE CAUSES AN RNA VIRUS TO TRADE REPRODUCTIVE JRNL TITL 2 FITNESS FOR INCREASED STRUCTURAL AND THERMAL STABILITY OF A JRNL TITL 3 VIRAL ENZYME. JRNL REF PLOS GENET V. 8 03102 2012 JRNL REFN ISSN 1553-7390 JRNL PMID 23209446 JRNL DOI 10.1371/JOURNAL.PGEN.1003102 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 77765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 420 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2181 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2443 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1674 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3332 ; 1.800 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3984 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;30.882 ;22.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;10.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;12.293 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2677 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4117 ;14.281 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 83 ;22.098 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4383 ; 8.745 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9469 12.4090 -2.3531 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0308 REMARK 3 T33: 0.0584 T12: 0.0097 REMARK 3 T13: -0.0106 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4885 L22: 0.3063 REMARK 3 L33: 0.1163 L12: -0.3819 REMARK 3 L13: 0.1866 L23: -0.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0372 S13: 0.1035 REMARK 3 S21: 0.0028 S22: 0.0168 S23: -0.0776 REMARK 3 S31: 0.0298 S32: -0.0070 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0181 13.6264 0.1429 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.0550 REMARK 3 T33: 0.0192 T12: 0.0049 REMARK 3 T13: 0.0054 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.9001 L22: 0.5719 REMARK 3 L33: 0.2097 L12: -0.2948 REMARK 3 L13: 0.3230 L23: 0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.0752 S13: 0.0074 REMARK 3 S21: 0.0306 S22: 0.0313 S23: 0.0040 REMARK 3 S31: -0.0046 S32: -0.0277 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2417 11.7200 -11.1849 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0364 REMARK 3 T33: 0.0199 T12: -0.0001 REMARK 3 T13: 0.0058 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1699 L22: 0.7642 REMARK 3 L33: 0.0788 L12: -0.1921 REMARK 3 L13: 0.0349 L23: 0.1570 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0271 S13: -0.0339 REMARK 3 S21: -0.1399 S22: -0.0049 S23: 0.0282 REMARK 3 S31: -0.0405 S32: -0.0175 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4485 16.8028 -25.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0344 REMARK 3 T33: 0.0074 T12: 0.0035 REMARK 3 T13: 0.0011 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.3630 L22: 0.4902 REMARK 3 L33: 0.2301 L12: -0.1298 REMARK 3 L13: 0.2474 L23: -0.2165 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0077 S13: 0.0229 REMARK 3 S21: 0.0279 S22: 0.0198 S23: 0.0003 REMARK 3 S31: -0.0089 S32: 0.0240 S33: 0.0037 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3484 17.7304 -32.0384 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0264 REMARK 3 T33: 0.0417 T12: -0.0010 REMARK 3 T13: -0.0079 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.0940 L22: 0.6561 REMARK 3 L33: 0.7909 L12: -0.1339 REMARK 3 L13: 0.1899 L23: 0.1508 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0095 S13: -0.0374 REMARK 3 S21: -0.0322 S22: 0.0006 S23: 0.1461 REMARK 3 S31: -0.0301 S32: -0.0050 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 167 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2592 17.9791 -43.8604 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.0142 REMARK 3 T33: 0.0093 T12: -0.0032 REMARK 3 T13: -0.0119 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0229 L22: 0.9010 REMARK 3 L33: 0.0515 L12: -0.1418 REMARK 3 L13: 0.0331 L23: -0.2141 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0039 S13: 0.0009 REMARK 3 S21: -0.2118 S22: -0.0423 S23: -0.0194 REMARK 3 S31: 0.0464 S32: 0.0124 S33: 0.0062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4DQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77799 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2 M POTASSIUM NITRATE, REMARK 280 PH 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.46800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 48 REMARK 465 GLN A 49 REMARK 465 ALA A 50 REMARK 465 LEU A 51 REMARK 465 LEU A 52 REMARK 465 PRO A 53 REMARK 465 LYS A 54 REMARK 465 ALA A 55 REMARK 465 GLN A 56 REMARK 465 SER A 57 REMARK 465 VAL A 58 REMARK 465 GLY A 59 REMARK 465 ASN A 60 REMARK 465 LYS A 198 REMARK 465 GLN A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 ALA A 202 REMARK 465 ALA A 203 REMARK 465 VAL A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 PHE A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 ARG A 211 REMARK 465 ASN A 212 REMARK 465 GLN A 213 REMARK 465 HIS A 214 REMARK 465 VAL A 215 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 SER A 218 REMARK 465 TRP A 219 REMARK 465 ALA A 220 REMARK 465 LEU B 48 REMARK 465 GLN B 49 REMARK 465 ALA B 50 REMARK 465 LEU B 51 REMARK 465 LEU B 52 REMARK 465 PRO B 53 REMARK 465 LYS B 54 REMARK 465 ALA B 55 REMARK 465 GLN B 56 REMARK 465 SER B 57 REMARK 465 VAL B 58 REMARK 465 GLY B 59 REMARK 465 ASN B 60 REMARK 465 GLN B 199 REMARK 465 SER B 200 REMARK 465 GLU B 201 REMARK 465 ALA B 202 REMARK 465 ALA B 203 REMARK 465 VAL B 204 REMARK 465 ALA B 205 REMARK 465 ALA B 206 REMARK 465 PHE B 207 REMARK 465 ALA B 208 REMARK 465 ALA B 209 REMARK 465 ALA B 210 REMARK 465 ARG B 211 REMARK 465 ASN B 212 REMARK 465 GLN B 213 REMARK 465 HIS B 214 REMARK 465 VAL B 215 REMARK 465 LYS B 216 REMARK 465 GLU B 217 REMARK 465 SER B 218 REMARK 465 TRP B 219 REMARK 465 ALA B 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 196 S AES A 305 1.75 REMARK 500 O HOH B 567 O HOH B 569 1.95 REMARK 500 NE2 GLN A 79 O HOH A 591 2.03 REMARK 500 O HOH A 436 O HOH A 623 2.11 REMARK 500 OH TYR B 175 O HOH B 529 2.15 REMARK 500 O HOH B 578 O HOH B 589 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 172 NZ LYS B 198 2444 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AES A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4DQ7 RELATED DB: PDB DBREF 4DQJ A 48 220 UNP Q283U5 Q283U5_BPPH6 48 220 DBREF 4DQJ B 48 220 UNP Q283U5 Q283U5_BPPH6 48 220 SEQADV 4DQJ PHE A 207 UNP Q283U5 VAL 207 ENGINEERED MUTATION SEQADV 4DQJ PHE B 207 UNP Q283U5 VAL 207 ENGINEERED MUTATION SEQRES 1 A 173 LEU GLN ALA LEU LEU PRO LYS ALA GLN SER VAL GLY ASN SEQRES 2 A 173 SER ARG VAL ARG PHE THR THR ALA GLU VAL ASP SER ALA SEQRES 3 A 173 VAL ALA ARG ILE SER GLN LYS ILE GLY VAL PRO ALA SER SEQRES 4 A 173 TYR TYR GLN PHE LEU ILE PRO ILE GLU ASN PHE VAL VAL SEQRES 5 A 173 ALA GLY GLY PHE GLU THR THR VAL SER GLY SER PHE ARG SEQRES 6 A 173 GLY LEU GLY GLN PHE ASN ARG GLN THR TRP ASP GLY LEU SEQRES 7 A 173 ARG ARG LEU GLY ARG ASN LEU PRO ALA PHE GLU GLU GLY SEQRES 8 A 173 SER ALA GLN LEU ASN ALA SER LEU TYR ALA ILE GLY PHE SEQRES 9 A 173 LEU TYR LEU GLU ASN LYS ARG ALA TYR GLU ALA SER PHE SEQRES 10 A 173 LYS GLY ARG VAL PHE THR HIS GLU ILE ALA TYR LEU TYR SEQRES 11 A 173 HIS ASN GLN GLY ALA PRO ALA ALA GLU GLN TYR LEU THR SEQRES 12 A 173 SER GLY ARG LEU VAL TYR PRO LYS GLN SER GLU ALA ALA SEQRES 13 A 173 VAL ALA ALA PHE ALA ALA ALA ARG ASN GLN HIS VAL LYS SEQRES 14 A 173 GLU SER TRP ALA SEQRES 1 B 173 LEU GLN ALA LEU LEU PRO LYS ALA GLN SER VAL GLY ASN SEQRES 2 B 173 SER ARG VAL ARG PHE THR THR ALA GLU VAL ASP SER ALA SEQRES 3 B 173 VAL ALA ARG ILE SER GLN LYS ILE GLY VAL PRO ALA SER SEQRES 4 B 173 TYR TYR GLN PHE LEU ILE PRO ILE GLU ASN PHE VAL VAL SEQRES 5 B 173 ALA GLY GLY PHE GLU THR THR VAL SER GLY SER PHE ARG SEQRES 6 B 173 GLY LEU GLY GLN PHE ASN ARG GLN THR TRP ASP GLY LEU SEQRES 7 B 173 ARG ARG LEU GLY ARG ASN LEU PRO ALA PHE GLU GLU GLY SEQRES 8 B 173 SER ALA GLN LEU ASN ALA SER LEU TYR ALA ILE GLY PHE SEQRES 9 B 173 LEU TYR LEU GLU ASN LYS ARG ALA TYR GLU ALA SER PHE SEQRES 10 B 173 LYS GLY ARG VAL PHE THR HIS GLU ILE ALA TYR LEU TYR SEQRES 11 B 173 HIS ASN GLN GLY ALA PRO ALA ALA GLU GLN TYR LEU THR SEQRES 12 B 173 SER GLY ARG LEU VAL TYR PRO LYS GLN SER GLU ALA ALA SEQRES 13 B 173 VAL ALA ALA PHE ALA ALA ALA ARG ASN GLN HIS VAL LYS SEQRES 14 B 173 GLU SER TRP ALA HET NAG C 1 15 HET NAG C 2 28 HET NAG C 3 14 HET NAG C 4 14 HET NAG D 1 15 HET NAG D 2 28 HET NAG D 3 14 HET NAG D 4 14 HET AES A 305 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM AES 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN AES AEBSF FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 5 AES C8 H10 F N O2 S FORMUL 6 HOH *422(H2 O) HELIX 1 1 THR A 67 GLY A 82 1 16 HELIX 2 2 PRO A 84 ASN A 96 1 13 HELIX 3 3 ASN A 118 LEU A 128 1 11 HELIX 4 4 ALA A 134 SER A 139 1 6 HELIX 5 5 GLN A 141 PHE A 164 1 24 HELIX 6 6 THR A 170 GLY A 181 1 12 HELIX 7 7 GLY A 181 SER A 191 1 11 HELIX 8 8 THR B 67 GLY B 82 1 16 HELIX 9 9 PRO B 84 ASN B 96 1 13 HELIX 10 10 ASN B 118 LEU B 128 1 11 HELIX 11 11 ALA B 134 SER B 139 1 6 HELIX 12 12 GLN B 141 PHE B 164 1 24 HELIX 13 13 THR B 170 GLY B 181 1 12 HELIX 14 14 GLY B 181 GLY B 192 1 12 SHEET 1 A 3 ARG A 62 THR A 66 0 SHEET 2 A 3 GLY A 102 THR A 106 -1 O PHE A 103 N PHE A 65 SHEET 3 A 3 PHE A 97 VAL A 99 -1 N PHE A 97 O GLU A 104 SHEET 1 B 3 ARG B 62 THR B 66 0 SHEET 2 B 3 GLY B 102 THR B 106 -1 O PHE B 103 N PHE B 65 SHEET 3 B 3 PHE B 97 VAL B 99 -1 N PHE B 97 O GLU B 104 LINK O4 NAG C 1 C1 BNAG C 2 1555 1555 1.43 LINK O4 NAG C 1 C1 ANAG C 2 1555 1555 1.43 LINK O4 BNAG C 2 C1 NAG C 3 1555 1555 1.47 LINK O4 ANAG C 2 C1 NAG C 3 1555 1555 1.47 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.59 LINK O4 NAG D 1 C1 BNAG D 2 1555 1555 1.35 LINK O4 NAG D 1 C1 ANAG D 2 1555 1555 1.43 LINK O4 BNAG D 2 C1 NAG D 3 1555 1555 1.33 LINK O4 ANAG D 2 C1 NAG D 3 1555 1555 1.40 LINK O4 NAG D 3 C1 NAG D 4 1555 1555 1.29 CRYST1 43.816 50.936 65.020 90.00 103.48 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022823 0.000000 0.005471 0.00000 SCALE2 0.000000 0.019632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015816 0.00000