HEADER TRANSFERASE/DNA 16-FEB-12 4DQP TITLE TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT, DNA TITLE 2 DUPLEX, AND DDCTP (PAIRED WITH DG OF TEMPLATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 287-878; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'); COMPND 10 CHAIN: B, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: POLA, GK2730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS DNA POLYMERASE I, PROTEIN-DNA COMPLEX, CYTOSINE-GUANINE, TRANSFERASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.S.BEESE REVDAT 4 13-SEP-23 4DQP 1 REMARK SEQADV LINK REVDAT 3 21-NOV-12 4DQP 1 JRNL REVDAT 2 13-JUN-12 4DQP 1 JRNL REVDAT 1 06-JUN-12 4DQP 0 JRNL AUTH W.WANG,E.Y.WU,H.W.HELLINGA,L.S.BEESE JRNL TITL STRUCTURAL FACTORS THAT DETERMINE SELECTIVITY OF A HIGH JRNL TITL 2 FIDELITY DNA POLYMERASE FOR DEOXY-, DIDEOXY-, AND JRNL TITL 3 RIBONUCLEOTIDES. JRNL REF J.BIOL.CHEM. V. 287 28215 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22648417 JRNL DOI 10.1074/JBC.M112.366609 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,H.W.HELLINGA,L.S.BEESE REMARK 1 TITL STRUCTURAL EVIDENCE FOR THE RARE TAUTOMER HYPOTHESIS OF REMARK 1 TITL 2 SPONTANEOUS MUTAGENESIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 17644 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1026 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 138100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460 REMARK 3 FREE R VALUE TEST SET COUNT : 6153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4519 - 5.3958 0.99 5322 274 0.1875 0.1950 REMARK 3 2 5.3958 - 4.2871 1.00 5147 271 0.1422 0.1775 REMARK 3 3 4.2871 - 3.7464 1.00 5110 264 0.1408 0.1546 REMARK 3 4 3.7464 - 3.4044 0.98 4982 248 0.1602 0.1932 REMARK 3 5 3.4044 - 3.1607 1.00 5057 268 0.1629 0.1802 REMARK 3 6 3.1607 - 2.9745 1.00 5068 257 0.1734 0.2055 REMARK 3 7 2.9745 - 2.8257 1.00 5065 230 0.1736 0.2107 REMARK 3 8 2.8257 - 2.7028 1.00 5052 226 0.1766 0.2109 REMARK 3 9 2.7028 - 2.5988 0.99 5054 208 0.1684 0.1797 REMARK 3 10 2.5988 - 2.5092 0.99 5040 217 0.1649 0.1982 REMARK 3 11 2.5092 - 2.4308 0.99 5070 202 0.1623 0.1869 REMARK 3 12 2.4308 - 2.3613 0.99 4976 208 0.1622 0.2006 REMARK 3 13 2.3613 - 2.2992 0.99 5036 195 0.1639 0.1918 REMARK 3 14 2.2992 - 2.2431 0.84 1773 65 0.1652 0.2245 REMARK 3 15 2.2431 - 2.1921 0.91 2665 154 0.1651 0.2177 REMARK 3 16 2.1921 - 2.1455 0.99 5023 187 0.1587 0.1839 REMARK 3 17 2.1455 - 2.1026 0.99 4965 207 0.1631 0.1891 REMARK 3 18 2.1026 - 2.0629 0.98 4941 191 0.1727 0.2144 REMARK 3 19 2.0629 - 2.0261 0.96 4891 171 0.1684 0.1836 REMARK 3 20 2.0261 - 1.9917 0.97 4896 187 0.1717 0.2052 REMARK 3 21 1.9917 - 1.9596 0.95 4751 235 0.1838 0.2238 REMARK 3 22 1.9596 - 1.9295 0.84 2131 112 0.1928 0.2532 REMARK 3 23 1.9011 - 1.8743 0.85 2503 132 0.1886 0.2729 REMARK 3 24 1.8743 - 1.8490 0.92 4572 241 0.1855 0.2193 REMARK 3 25 1.8490 - 1.8250 0.93 4628 243 0.1841 0.2487 REMARK 3 26 1.8250 - 1.8022 0.93 4629 244 0.1931 0.2183 REMARK 3 27 1.8022 - 1.7805 0.92 4592 242 0.1955 0.2518 REMARK 3 28 1.7805 - 1.7598 0.91 4500 237 0.2063 0.2519 REMARK 3 29 1.7598 - 1.7400 0.91 4508 237 0.2070 0.2602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35680 REMARK 3 B22 (A**2) : -1.21750 REMARK 3 B33 (A**2) : 1.57430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 10666 REMARK 3 ANGLE : 1.395 14647 REMARK 3 CHIRALITY : 0.080 1635 REMARK 3 PLANARITY : 0.007 1750 REMARK 3 DIHEDRAL : 16.530 4126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 297:467) REMARK 3 ORIGIN FOR THE GROUP (A): 118.4347 -57.3590 22.8424 REMARK 3 T TENSOR REMARK 3 T11: 0.5520 T22: 0.2896 REMARK 3 T33: 0.3117 T12: 0.0312 REMARK 3 T13: 0.1735 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.4406 L22: 1.2020 REMARK 3 L33: 1.2058 L12: 0.7945 REMARK 3 L13: -0.4742 L23: -0.4343 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: 0.3273 S13: -0.2784 REMARK 3 S21: -0.4821 S22: 0.0794 S23: -0.1127 REMARK 3 S31: 0.2311 S32: -0.0698 S33: 0.0316 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 468:666) REMARK 3 ORIGIN FOR THE GROUP (A): 115.1835 -32.0567 46.8971 REMARK 3 T TENSOR REMARK 3 T11: 0.2892 T22: 0.2224 REMARK 3 T33: 0.2036 T12: -0.0328 REMARK 3 T13: 0.0559 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.2505 L22: 2.5067 REMARK 3 L33: 0.9872 L12: -0.1139 REMARK 3 L13: 0.0517 L23: -0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: -0.1515 S13: 0.0423 REMARK 3 S21: 0.1718 S22: 0.0313 S23: 0.0044 REMARK 3 S31: -0.0940 S32: 0.1303 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 667:780) REMARK 3 ORIGIN FOR THE GROUP (A): 129.6314 -15.9813 33.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.6673 T22: 0.4228 REMARK 3 T33: 0.5726 T12: -0.1359 REMARK 3 T13: 0.2410 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.3361 L22: 1.0004 REMARK 3 L33: 2.2270 L12: -1.1986 REMARK 3 L13: -0.1626 L23: 0.1191 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: -0.6308 S13: 0.7915 REMARK 3 S21: -0.4565 S22: 0.1321 S23: -0.8826 REMARK 3 S31: -0.7656 S32: 0.4102 S33: -0.1049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 781:876) REMARK 3 ORIGIN FOR THE GROUP (A): 134.4364 -37.2601 41.4381 REMARK 3 T TENSOR REMARK 3 T11: 0.3283 T22: 0.5524 REMARK 3 T33: 0.4726 T12: -0.0833 REMARK 3 T13: 0.1166 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.0834 L22: 2.1932 REMARK 3 L33: 2.6770 L12: 0.2433 REMARK 3 L13: -0.2756 L23: -0.6711 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: -0.2521 S13: -0.0650 REMARK 3 S21: 0.0066 S22: -0.2186 S23: -0.9318 REMARK 3 S31: -0.3698 S32: 1.0194 S33: 0.2786 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 298:467) REMARK 3 ORIGIN FOR THE GROUP (A): 138.9373 -47.7296 -9.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0811 REMARK 3 T33: 0.0723 T12: 0.0242 REMARK 3 T13: -0.0112 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.4883 L22: 1.6389 REMARK 3 L33: 1.3276 L12: -0.2548 REMARK 3 L13: 0.2990 L23: 0.3061 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0069 S13: -0.1146 REMARK 3 S21: -0.0461 S22: 0.0156 S23: -0.0441 REMARK 3 S31: 0.1049 S32: 0.0846 S33: -0.0244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 468:604) REMARK 3 ORIGIN FOR THE GROUP (A): 123.2728 -20.3477 -30.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.1445 REMARK 3 T33: 0.1296 T12: 0.0009 REMARK 3 T13: -0.0136 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.6290 L22: 1.3925 REMARK 3 L33: 0.6623 L12: 0.3795 REMARK 3 L13: -0.0734 L23: -0.5265 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: 0.1824 S13: 0.1222 REMARK 3 S21: -0.3194 S22: 0.2067 S23: 0.1943 REMARK 3 S31: -0.0707 S32: -0.0827 S33: -0.0854 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 605:876) REMARK 3 ORIGIN FOR THE GROUP (A): 119.0135 -18.4546 -8.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0970 REMARK 3 T33: 0.1042 T12: 0.0081 REMARK 3 T13: 0.0068 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.9381 L22: 1.2601 REMARK 3 L33: 0.9686 L12: 0.0160 REMARK 3 L13: -0.1002 L23: 0.5852 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.1042 S13: 0.1558 REMARK 3 S21: -0.0752 S22: -0.0509 S23: 0.1217 REMARK 3 S31: -0.1243 S32: -0.0602 S33: 0.0090 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 109.1670 -28.3019 40.1795 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.1615 REMARK 3 T33: 0.2922 T12: -0.0050 REMARK 3 T13: -0.0061 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 3.4107 L22: 2.7887 REMARK 3 L33: 3.3179 L12: -0.3009 REMARK 3 L13: -0.5733 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: 0.0223 S13: -0.0391 REMARK 3 S21: -0.5834 S22: -0.0341 S23: 0.4574 REMARK 3 S31: -0.1680 S32: -0.0392 S33: 0.1303 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 111.1166 -27.0632 37.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.2269 REMARK 3 T33: 0.2575 T12: 0.0265 REMARK 3 T13: -0.0081 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 3.5915 L22: 2.9273 REMARK 3 L33: 1.5258 L12: 0.6784 REMARK 3 L13: -0.9168 L23: 0.5238 REMARK 3 S TENSOR REMARK 3 S11: -0.1476 S12: 0.1335 S13: 0.3574 REMARK 3 S21: -0.5721 S22: 0.0396 S23: 0.5334 REMARK 3 S31: -0.0956 S32: -0.1397 S33: 0.0799 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 21:29) REMARK 3 ORIGIN FOR THE GROUP (A): 130.5413 -18.4940 -27.0666 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1437 REMARK 3 T33: 0.2134 T12: 0.0262 REMARK 3 T13: 0.0303 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.9002 L22: 1.0562 REMARK 3 L33: 3.3757 L12: 1.0299 REMARK 3 L13: -0.8724 L23: -0.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: 0.1278 S13: 0.0797 REMARK 3 S21: -0.1101 S22: 0.1040 S23: -0.3286 REMARK 3 S31: 0.0502 S32: 0.1509 S33: -0.0734 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): 131.9851 -17.3214 -23.7591 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1647 REMARK 3 T33: 0.1941 T12: -0.0281 REMARK 3 T13: 0.0713 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.9164 L22: 0.7439 REMARK 3 L33: 1.9883 L12: -0.4739 REMARK 3 L13: -0.5139 L23: -0.3118 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.1263 S13: 0.2256 REMARK 3 S21: -0.2780 S22: 0.0977 S23: -0.2285 REMARK 3 S31: -0.2333 S32: 0.1406 S33: -0.1931 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142490 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2HVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45%-53% SATURATED AMMONIUM SULFATE, REMARK 280 2.5% MPD, 10MM MGSO4, 100MM MES, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.96500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.96500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 PRO A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 ARG A 676 REMARK 465 ARG A 677 REMARK 465 ASP A 678 REMARK 465 LEU A 679 REMARK 465 MET D 285 REMARK 465 GLU D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 SER D 290 REMARK 465 GLU D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 LYS D 294 REMARK 465 PRO D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 DC C 0 REMARK 465 DC F 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 P OP1 OP2 REMARK 470 DA F 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS D 315 O HOH D 1632 1.18 REMARK 500 HH22 ARG D 459 O HOH D 1688 1.50 REMARK 500 HE ARG D 629 O HOH D 1666 1.51 REMARK 500 HE ARG A 596 O HOH A 1022 1.53 REMARK 500 HH12 ARG A 435 O HOH A 1157 1.57 REMARK 500 HH21 ARG D 629 O HOH D 1666 1.58 REMARK 500 O VAL A 323 HH21 ARG A 435 1.59 REMARK 500 O HOH D 1442 O HOH D 1643 1.90 REMARK 500 O HOH B 127 O HOH C 129 1.94 REMARK 500 O HOH D 1671 O HOH D 1678 1.95 REMARK 500 O HOH D 1611 O HOH D 1699 1.97 REMARK 500 NE ARG D 423 O HOH D 1668 1.97 REMARK 500 O HOH A 1300 O HOH A 1303 1.99 REMARK 500 OE1 GLU A 445 O HOH A 1368 1.99 REMARK 500 O HOH D 1691 O HOH D 1692 1.99 REMARK 500 O HOH D 1578 O HOH D 1701 1.99 REMARK 500 O HOH D 1581 O HOH D 1600 2.02 REMARK 500 O HOH E 135 O HOH E 136 2.03 REMARK 500 NZ LYS D 315 O HOH D 1632 2.05 REMARK 500 O HOH D 1308 O HOH E 130 2.06 REMARK 500 O HOH A 1249 O HOH A 1264 2.07 REMARK 500 O HOH A 1306 O HOH C 151 2.07 REMARK 500 NE ARG D 629 O HOH D 1666 2.08 REMARK 500 O HOH D 1402 O HOH D 1710 2.08 REMARK 500 O HOH D 1517 O HOH D 1539 2.08 REMARK 500 O HOH D 1164 O HOH D 1550 2.09 REMARK 500 OE2 GLU D 310 O HOH D 1465 2.10 REMARK 500 OE1 GLU D 589 O HOH D 1694 2.11 REMARK 500 NH2 ARG D 629 O HOH D 1666 2.11 REMARK 500 O HOH D 1277 O HOH D 1309 2.11 REMARK 500 O HOH D 1530 O HOH D 1659 2.11 REMARK 500 O HOH D 1488 O HOH D 1579 2.11 REMARK 500 O HOH D 1516 O HOH D 1520 2.11 REMARK 500 O HOH D 1653 O HOH D 1655 2.13 REMARK 500 O HOH D 1481 O HOH F 151 2.14 REMARK 500 NH2 ARG D 459 O HOH D 1688 2.14 REMARK 500 O HOH D 1226 O HOH D 1238 2.14 REMARK 500 NH1 ARG D 629 O HOH D 1254 2.15 REMARK 500 NH1 ARG D 435 O HOH D 1356 2.15 REMARK 500 O HOH D 1673 O HOH D 1685 2.15 REMARK 500 O HOH D 1448 O HOH D 1627 2.16 REMARK 500 O LYS D 876 O HOH D 1621 2.16 REMARK 500 O HOH D 1420 O HOH D 1709 2.17 REMARK 500 O HOH D 1382 O HOH D 1427 2.17 REMARK 500 O HOH D 1601 O HOH D 1603 2.17 REMARK 500 NH1 ARG A 435 O HOH A 1157 2.18 REMARK 500 O HOH A 1198 O HOH D 1519 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 25 O3' DA B 25 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 859 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 859 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DT B 23 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 23 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC B 26 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 3 C2 - N3 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT C 8 N3 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT C 8 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT E 23 O4' - C1' - N1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC E 26 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA F 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC F 9 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 298 82.66 -155.55 REMARK 500 ASP A 402 96.61 -166.67 REMARK 500 ALA A 421 36.84 -80.42 REMARK 500 LEU A 477 -64.54 -124.51 REMARK 500 LEU A 477 -64.00 -124.00 REMARK 500 ILE A 588 -68.15 -107.61 REMARK 500 ILE A 628 -27.87 -152.91 REMARK 500 HIS A 829 -53.94 69.41 REMARK 500 ASP D 372 64.61 60.81 REMARK 500 ASP D 402 93.43 -165.62 REMARK 500 ALA D 421 46.74 -90.54 REMARK 500 LEU D 477 -65.65 -126.50 REMARK 500 GLN D 524 145.78 -175.45 REMARK 500 GLU D 540 -60.37 -108.82 REMARK 500 ILE D 588 -69.67 -100.84 REMARK 500 LEU D 610 -51.99 -125.36 REMARK 500 ILE D 628 -28.75 -148.63 REMARK 500 HIS D 768 18.49 82.34 REMARK 500 HIS D 829 -55.48 74.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 830 OD2 REMARK 620 2 DCT A 901 O2G 147.5 REMARK 620 3 DCT A 901 O2B 97.1 82.6 REMARK 620 4 DCT A 901 O2A 68.3 80.0 77.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 830 OD2 REMARK 620 2 DCT D 901 O2A 88.7 REMARK 620 3 DCT D 901 O2G 176.3 92.4 REMARK 620 4 DCT D 901 O2B 98.4 91.8 85.2 REMARK 620 5 HOH D1033 O 85.1 86.6 91.4 176.1 REMARK 620 6 HOH D1690 O 87.5 172.2 91.0 95.6 86.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DQQ RELATED DB: PDB REMARK 900 RELATED ID: 4DQR RELATED DB: PDB REMARK 900 RELATED ID: 4DQS RELATED DB: PDB REMARK 900 RELATED ID: 4DS4 RELATED DB: PDB REMARK 900 RELATED ID: 4DS5 RELATED DB: PDB REMARK 900 RELATED ID: 4DSE RELATED DB: PDB REMARK 900 RELATED ID: 4DSF RELATED DB: PDB REMARK 900 RELATED ID: 4DIQ RELATED DB: PDB REMARK 900 RELATED ID: 4E0D RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE PROTEIN WAS ISOLATED FROM A STRAIN OF REMARK 999 GEOBACILLUS SPECIES WHOSE SEQUENCE IS NOT AVAILABLE IN THE UNIPROT REMARK 999 DATABASE. IT DIFFERS FROM UNP Q5KWC1 BY THIS SINGLE RESIDUE DBREF 4DQP A 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DQP D 285 876 UNP Q5KWC1 Q5KWC1_GEOKA 287 878 DBREF 4DQP B 21 29 PDB 4DQP 4DQP 21 29 DBREF 4DQP E 21 29 PDB 4DQP 4DQP 21 29 DBREF 4DQP C 0 12 PDB 4DQP 4DQP 0 12 DBREF 4DQP F 0 12 PDB 4DQP 4DQP 0 12 SEQADV 4DQP ALA A 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DQP HIS A 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQADV 4DQP ALA D 598 UNP Q5KWC1 ASP 600 ENGINEERED MUTATION SEQADV 4DQP HIS D 823 UNP Q5KWC1 ARG 825 SEE REMARK 999 SEQRES 1 A 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 A 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 A 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 A 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 A 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 A 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 A 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 A 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 A 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 A 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 A 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 A 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 A 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 A 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 A 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 A 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 A 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 A 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 A 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 A 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 A 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 A 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 A 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 A 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 A 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 A 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 A 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 A 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 A 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 A 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 A 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 A 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 A 592 MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL SEQRES 34 A 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 A 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 A 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 A 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 A 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 A 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 A 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 A 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 A 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 A 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 A 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 A 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 A 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 D 592 MET GLU SER PRO SER SER GLU GLU GLU LYS PRO LEU ALA SEQRES 2 D 592 LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU SEQRES 3 D 592 MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL SEQRES 4 D 592 GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA SEQRES 5 D 592 VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU SEQRES 6 D 592 THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY SEQRES 7 D 592 ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG SEQRES 8 D 592 ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS SEQRES 9 D 592 GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU SEQRES 10 D 592 ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA SEQRES 11 D 592 LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA SEQRES 12 D 592 VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU SEQRES 13 D 592 PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA SEQRES 14 D 592 ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG SEQRES 15 D 592 ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN SEQRES 16 D 592 PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY SEQRES 17 D 592 VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS SEQRES 18 D 592 GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE SEQRES 19 D 592 TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO SEQRES 20 D 592 LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU SEQRES 21 D 592 PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER SEQRES 22 D 592 ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE SEQRES 23 D 592 VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU SEQRES 24 D 592 GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG SEQRES 25 D 592 PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA SEQRES 26 D 592 LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN SEQRES 27 D 592 LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS SEQRES 28 D 592 ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU SEQRES 29 D 592 ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 30 D 592 LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA SEQRES 31 D 592 PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET SEQRES 32 D 592 ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN SEQRES 33 D 592 MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL SEQRES 34 D 592 TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN SEQRES 35 D 592 ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR SEQRES 36 D 592 PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN SEQRES 37 D 592 ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR SEQRES 38 D 592 LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER SEQRES 39 D 592 ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA SEQRES 40 D 592 MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE SEQRES 41 D 592 LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU SEQRES 42 D 592 GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP SEQRES 43 D 592 GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG SEQRES 44 D 592 LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL SEQRES 45 D 592 THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY SEQRES 46 D 592 SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 C 13 DC DA DT DG DG DG DA DG DT DC DA DG DG SEQRES 1 E 9 DC DC DT DG DA DC DT DC DOC SEQRES 1 F 13 DC DA DT DG DG DG DA DG DT DC DA DG DG MODRES 4DQP DOC B 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 4DQP DOC E 29 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC B 29 28 HET DOC E 29 28 HET DCT A 901 35 HET DCT A 902 35 HET MG A 903 1 HET DCT D 901 35 HET MG D 902 1 HET SO4 D 903 5 HET SO4 D 904 5 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 7 DCT 3(C9 H16 N3 O12 P3) FORMUL 9 MG 2(MG 2+) FORMUL 12 SO4 2(O4 S 2-) FORMUL 14 HOH *1302(H2 O) HELIX 1 1 THR A 308 LEU A 312 5 5 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 LYS A 383 1 12 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 LEU A 564 1 8 HELIX 16 16 GLU A 569 TYR A 587 1 19 HELIX 17 17 ILE A 588 VAL A 595 1 8 HELIX 18 18 LEU A 630 LYS A 635 1 6 HELIX 19 19 ILE A 636 GLN A 638 5 3 HELIX 20 20 GLN A 656 GLU A 667 1 12 HELIX 21 21 ASP A 668 PHE A 675 1 8 HELIX 22 22 ILE A 681 PHE A 690 1 10 HELIX 23 23 SER A 693 VAL A 697 5 5 HELIX 24 24 THR A 698 TYR A 714 1 17 HELIX 25 25 SER A 717 LEU A 725 1 9 HELIX 26 26 SER A 728 PHE A 743 1 16 HELIX 27 27 PHE A 743 GLY A 761 1 19 HELIX 28 28 PRO A 774 SER A 778 5 5 HELIX 29 29 ASN A 780 GLU A 818 1 39 HELIX 30 30 GLU A 840 GLN A 854 1 15 HELIX 31 31 THR D 308 ALA D 313 5 6 HELIX 32 32 ARG D 347 LEU D 352 1 6 HELIX 33 33 ASP D 354 GLY D 362 1 9 HELIX 34 34 ASP D 372 LYS D 383 1 12 HELIX 35 35 LEU D 394 ASP D 402 1 9 HELIX 36 36 PRO D 403 GLY D 406 5 4 HELIX 37 37 ASP D 409 MET D 416 1 8 HELIX 38 38 PRO D 424 GLY D 430 1 7 HELIX 39 39 LYS D 431 ARG D 435 5 5 HELIX 40 40 ASP D 439 ASN D 468 1 30 HELIX 41 41 GLN D 470 LEU D 477 1 8 HELIX 42 42 LEU D 477 GLY D 492 1 16 HELIX 43 43 ASP D 496 GLY D 523 1 28 HELIX 44 44 SER D 530 GLU D 540 1 11 HELIX 45 45 SER D 557 LEU D 564 1 8 HELIX 46 46 GLU D 569 TYR D 587 1 19 HELIX 47 47 ILE D 588 VAL D 595 1 8 HELIX 48 48 LEU D 630 LYS D 635 1 6 HELIX 49 49 ILE D 636 GLN D 638 5 3 HELIX 50 50 GLN D 656 GLU D 667 1 12 HELIX 51 51 ASP D 668 ARG D 677 1 10 HELIX 52 52 ASP D 680 PHE D 690 1 11 HELIX 53 53 SER D 693 VAL D 697 5 5 HELIX 54 54 THR D 698 TYR D 714 1 17 HELIX 55 55 SER D 717 ASN D 726 1 10 HELIX 56 56 SER D 728 PHE D 743 1 16 HELIX 57 57 PHE D 743 GLY D 761 1 19 HELIX 58 58 PRO D 774 SER D 778 5 5 HELIX 59 59 ASN D 780 GLU D 818 1 39 HELIX 60 60 GLU D 840 GLN D 854 1 15 HELIX 61 61 THR D 871 LYS D 876 5 6 SHEET 1 A 6 THR A 302 ALA A 304 0 SHEET 2 A 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 A 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 A 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 A 6 LYS A 367 MET A 370 1 O SER A 369 N ALA A 316 SHEET 6 A 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 B 3 LYS A 601 VAL A 602 0 SHEET 2 B 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 B 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 C 2 LYS A 549 THR A 550 0 SHEET 2 C 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 D 2 ILE A 605 ASN A 607 0 SHEET 2 D 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 E 4 HIS A 823 GLN A 827 0 SHEET 2 E 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 E 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 E 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 F 2 TYR A 762 THR A 764 0 SHEET 2 F 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 G 6 THR D 302 ALA D 304 0 SHEET 2 G 6 GLY D 342 LEU D 346 1 O ARG D 343 N THR D 302 SHEET 3 G 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 G 6 LYS D 315 GLU D 321 -1 N VAL D 319 O ALA D 336 SHEET 5 G 6 LYS D 367 MET D 370 1 O SER D 369 N ALA D 316 SHEET 6 G 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 H 3 LYS D 601 VAL D 602 0 SHEET 2 H 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 H 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 I 2 LYS D 549 THR D 550 0 SHEET 2 I 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 J 2 ILE D 605 ASN D 607 0 SHEET 2 J 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 K 4 HIS D 823 GLN D 827 0 SHEET 2 K 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 K 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 K 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 L 2 TYR D 762 THR D 764 0 SHEET 2 L 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763 LINK O3' DC B 28 P DOC B 29 1555 1555 1.62 LINK O3' DC E 28 P DOC E 29 1555 1555 1.62 LINK OD2 ASP A 830 MG MG A 903 1555 1555 2.50 LINK O2G DCT A 901 MG MG A 903 1555 1555 2.11 LINK O2B DCT A 901 MG MG A 903 1555 1555 2.14 LINK O2A DCT A 901 MG MG A 903 1555 1555 2.22 LINK OD2 ASP D 830 MG MG D 902 1555 1555 2.12 LINK O2A DCT D 901 MG MG D 902 1555 1555 2.03 LINK O2G DCT D 901 MG MG D 902 1555 1555 2.05 LINK O2B DCT D 901 MG MG D 902 1555 1555 2.09 LINK MG MG D 902 O HOH D1033 1555 1555 2.12 LINK MG MG D 902 O HOH D1690 1555 1555 1.96 CISPEP 1 GLU A 620 PRO A 621 0 2.18 CISPEP 2 GLU D 620 PRO D 621 0 -0.70 SITE 1 AC1 16 ARG A 615 GLN A 656 GLU A 658 HIS A 682 SITE 2 AC1 16 ARG A 702 LYS A 706 PHE A 710 ASP A 830 SITE 3 AC1 16 MG A 903 HOH A1024 HOH A1246 HOH A1289 SITE 4 AC1 16 HOH A1298 DOC B 29 DG C 3 DG C 4 SITE 1 AC2 8 GLU A 469 GLN A 470 ASP A 471 ARG A 472 SITE 2 AC2 8 LEU A 473 LEU A 767 HIS A 768 HOH A1236 SITE 1 AC3 3 TYR A 654 ASP A 830 DCT A 901 SITE 1 AC4 22 ARG D 615 GLN D 656 GLU D 658 HIS D 682 SITE 2 AC4 22 ARG D 702 LYS D 706 PHE D 710 ASP D 830 SITE 3 AC4 22 MG D 902 HOH D1018 HOH D1032 HOH D1033 SITE 4 AC4 22 HOH D1157 HOH D1184 HOH D1308 HOH D1374 SITE 5 AC4 22 HOH D1424 HOH D1557 HOH D1690 DOC E 29 SITE 6 AC4 22 DG F 3 DG F 4 SITE 1 AC5 4 ASP D 830 DCT D 901 HOH D1033 HOH D1690 SITE 1 AC6 4 MET D 299 ALA D 300 ARG D 343 ARG D 677 SITE 1 AC7 4 ARG D 306 THR D 308 GLU D 309 HOH D1232 CRYST1 94.220 109.340 149.930 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006670 0.00000