HEADER VIRAL PROTEIN 17-FEB-12 4DRR TITLE CELL ATTACHMENT PROTEIN VP8* OF A HUMAN ROTAVIRUS SPECIFICALLY TITLE 2 INTERACTS WITH A-TYPE HISTO-BLOOD GROUP ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 64-224; COMPND 5 SYNONYM: ROTAVIRUS CELL ATTACHMENT PROTEIN VP8*; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS SP.; SOURCE 3 ORGANISM_TAXID: 10970; SOURCE 4 GENE: VP4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OTAVIRUS, VIRAL PROTEIN, CELL ATTACHMENT FACTOR, HISTO BLOOD GROUP KEYWDS 2 ANTIGEN, GALECTIN-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR L.HU,S.E.CRAWFORD,R.CZAKO,N.W.CORTES-PENFIELD,D.F.SMITH,J.LE PENDU, AUTHOR 2 M.K.ESTES,B.V.V.PRASAD REVDAT 3 13-SEP-23 4DRR 1 REMARK SEQADV REVDAT 2 23-MAY-12 4DRR 1 JRNL REVDAT 1 11-APR-12 4DRR 0 JRNL AUTH L.HU,S.E.CRAWFORD,R.CZAKO,N.W.CORTES-PENFIELD,D.F.SMITH, JRNL AUTH 2 J.LE PENDU,M.K.ESTES,B.V.PRASAD JRNL TITL CELL ATTACHMENT PROTEIN VP8* OF A HUMAN ROTAVIRUS JRNL TITL 2 SPECIFICALLY INTERACTS WITH A-TYPE HISTO-BLOOD GROUP JRNL TITL 3 ANTIGEN. JRNL REF NATURE V. 485 256 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22504179 JRNL DOI 10.1038/NATURE10996 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_516) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 20536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7958 - 2.8680 1.00 2980 166 0.1319 0.1427 REMARK 3 2 2.8680 - 2.2770 1.00 2914 157 0.1533 0.2118 REMARK 3 3 2.2770 - 1.9894 0.99 2876 145 0.1591 0.2068 REMARK 3 4 1.9894 - 1.8075 0.98 2843 145 0.1648 0.2103 REMARK 3 5 1.8075 - 1.6780 0.97 2808 155 0.2137 0.2769 REMARK 3 6 1.6780 - 1.5791 0.96 2752 160 0.3565 0.3851 REMARK 3 7 1.5791 - 1.5000 0.80 2315 120 0.6282 0.7719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.27 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 20.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85700 REMARK 3 B22 (A**2) : 1.66290 REMARK 3 B33 (A**2) : 0.89760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12590 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1339 REMARK 3 ANGLE : 1.057 1830 REMARK 3 CHIRALITY : 0.067 203 REMARK 3 PLANARITY : 0.004 235 REMARK 3 DIHEDRAL : 12.127 477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 62:68) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7687 15.0566 16.8915 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1309 REMARK 3 T33: 0.0663 T12: 0.0006 REMARK 3 T13: 0.0216 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.2185 L22: 1.1664 REMARK 3 L33: 0.8177 L12: 0.0050 REMARK 3 L13: 0.2680 L23: 0.4490 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: 0.0847 S13: 0.0190 REMARK 3 S21: 0.0182 S22: -0.1472 S23: -0.2510 REMARK 3 S31: 0.0560 S32: 0.2925 S33: 0.1845 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 69:85) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7651 10.5278 27.8821 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0587 REMARK 3 T33: 0.0677 T12: 0.0018 REMARK 3 T13: -0.0006 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1495 L22: 0.3008 REMARK 3 L33: 0.0688 L12: 0.1472 REMARK 3 L13: -0.0337 L23: 0.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.0369 S13: -0.0069 REMARK 3 S21: -0.0962 S22: -0.0225 S23: 0.0622 REMARK 3 S31: -0.0027 S32: -0.0090 S33: 0.0351 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 86:92) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1665 15.1698 35.2525 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.0150 REMARK 3 T33: 0.0314 T12: 0.0108 REMARK 3 T13: -0.0184 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.5391 L22: 0.2247 REMARK 3 L33: 2.2318 L12: -0.3379 REMARK 3 L13: -0.4188 L23: -0.1997 REMARK 3 S TENSOR REMARK 3 S11: -0.3158 S12: -0.1707 S13: 0.0717 REMARK 3 S21: 0.0660 S22: 0.1426 S23: 0.1848 REMARK 3 S31: 0.0617 S32: -0.2873 S33: 0.0886 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 93:99) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6118 5.1340 41.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0796 REMARK 3 T33: 0.0491 T12: -0.0226 REMARK 3 T13: 0.0044 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.9001 L22: 1.0472 REMARK 3 L33: 0.5809 L12: 0.2712 REMARK 3 L13: 0.0183 L23: 0.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: 0.2575 S13: 0.1038 REMARK 3 S21: 0.1976 S22: 0.1695 S23: -0.0465 REMARK 3 S31: 0.0082 S32: -0.2037 S33: -0.0447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 100:105) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2636 2.3292 41.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0657 REMARK 3 T33: 0.0717 T12: -0.0168 REMARK 3 T13: 0.0050 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.7094 L22: 0.8077 REMARK 3 L33: 0.5457 L12: 0.5867 REMARK 3 L13: -0.2478 L23: -0.5501 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0545 S13: 0.1602 REMARK 3 S21: -0.1261 S22: 0.0345 S23: -0.0020 REMARK 3 S31: 0.0914 S32: 0.0728 S33: -0.0584 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 106:112) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1179 9.2778 36.1572 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0609 REMARK 3 T33: 0.0436 T12: 0.0033 REMARK 3 T13: 0.0116 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.4213 L22: 0.3002 REMARK 3 L33: 0.4464 L12: -0.1072 REMARK 3 L13: -0.1007 L23: 0.0169 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0856 S13: 0.0002 REMARK 3 S21: 0.0681 S22: -0.0779 S23: 0.0202 REMARK 3 S31: 0.0330 S32: -0.0711 S33: 0.0208 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 113:118) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2805 7.8585 45.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0826 REMARK 3 T33: 0.0746 T12: -0.0156 REMARK 3 T13: 0.0079 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.6642 L22: 0.8976 REMARK 3 L33: 0.5249 L12: -0.9214 REMARK 3 L13: -0.1363 L23: 0.2231 REMARK 3 S TENSOR REMARK 3 S11: -0.1523 S12: -0.0456 S13: 0.1078 REMARK 3 S21: 0.3163 S22: -0.0521 S23: -0.0942 REMARK 3 S31: 0.0094 S32: 0.0278 S33: 0.1401 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 119:128) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9567 9.9467 47.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0720 REMARK 3 T33: 0.0923 T12: -0.0072 REMARK 3 T13: 0.0071 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.1710 L22: 0.3936 REMARK 3 L33: 0.2952 L12: 0.1716 REMARK 3 L13: 0.0063 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.0839 S13: 0.0382 REMARK 3 S21: 0.1046 S22: -0.0003 S23: -0.0499 REMARK 3 S31: -0.1389 S32: 0.0476 S33: -0.0710 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 129:134) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6698 3.4901 38.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0988 REMARK 3 T33: 0.0526 T12: 0.0102 REMARK 3 T13: 0.0178 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5825 L22: 0.2425 REMARK 3 L33: 0.9306 L12: -0.1135 REMARK 3 L13: -0.6747 L23: 0.1674 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: -0.1386 S13: 0.0106 REMARK 3 S21: 0.0841 S22: 0.1063 S23: 0.1465 REMARK 3 S31: 0.2907 S32: -0.0080 S33: 0.0191 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 135:139) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5182 7.3832 30.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.1210 REMARK 3 T33: 0.0656 T12: 0.0086 REMARK 3 T13: 0.0327 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2084 L22: 0.1218 REMARK 3 L33: 0.5572 L12: 0.2279 REMARK 3 L13: 0.2576 L23: 0.1579 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: 0.1791 S13: 0.0469 REMARK 3 S21: 0.1005 S22: 0.0112 S23: 0.0794 REMARK 3 S31: -0.2210 S32: 0.1567 S33: -0.1235 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 140:147) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2576 1.8790 41.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.0523 T22: 0.0733 REMARK 3 T33: 0.0433 T12: -0.0133 REMARK 3 T13: 0.0116 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.7192 L22: 0.1716 REMARK 3 L33: 1.1710 L12: -0.0477 REMARK 3 L13: -1.0939 L23: 0.0851 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: -0.2438 S13: 0.1312 REMARK 3 S21: 0.0898 S22: 0.0291 S23: 0.1120 REMARK 3 S31: 0.1364 S32: 0.0077 S33: -0.0011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 148:155) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2284 0.7572 46.1833 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0544 REMARK 3 T33: 0.0220 T12: 0.0015 REMARK 3 T13: 0.0177 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.2205 L22: 0.7309 REMARK 3 L33: 0.4675 L12: -0.6140 REMARK 3 L13: -0.0359 L23: 0.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.1031 S13: 0.2407 REMARK 3 S21: -0.0547 S22: 0.0026 S23: -0.1156 REMARK 3 S31: -0.0462 S32: -0.0053 S33: 0.0070 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 156:161) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1915 2.8983 29.6288 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.0885 REMARK 3 T33: 0.0385 T12: -0.0073 REMARK 3 T13: 0.0077 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.1343 L22: 0.3080 REMARK 3 L33: 0.4787 L12: 0.1392 REMARK 3 L13: 0.0272 L23: -0.2547 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.0456 S13: 0.2287 REMARK 3 S21: -0.0575 S22: 0.0177 S23: 0.1212 REMARK 3 S31: 0.0669 S32: -0.1205 S33: -0.0061 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 162:170) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5076 5.1304 27.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0762 REMARK 3 T33: 0.0651 T12: -0.0118 REMARK 3 T13: 0.0009 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2620 L22: 0.6158 REMARK 3 L33: 0.4836 L12: 0.5690 REMARK 3 L13: -0.2466 L23: -0.3042 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: -0.0387 S13: 0.0291 REMARK 3 S21: -0.1206 S22: -0.0156 S23: -0.0433 REMARK 3 S31: 0.0454 S32: 0.1346 S33: 0.0477 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 171:180) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7339 -2.1054 28.9976 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.0673 REMARK 3 T33: 0.0507 T12: -0.0120 REMARK 3 T13: 0.0056 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1272 L22: -0.0144 REMARK 3 L33: 0.0110 L12: 0.0566 REMARK 3 L13: -0.0167 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.1941 S12: -0.0620 S13: 0.2209 REMARK 3 S21: 0.0501 S22: -0.1139 S23: 0.0416 REMARK 3 S31: 0.0659 S32: 0.0247 S33: -0.0224 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 181:192) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5187 -3.2012 28.6797 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0461 REMARK 3 T33: 0.0616 T12: 0.0110 REMARK 3 T13: 0.0160 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.2775 L22: 0.0710 REMARK 3 L33: 0.4894 L12: -0.0332 REMARK 3 L13: -0.0915 L23: -0.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: -0.0353 S13: -0.1167 REMARK 3 S21: -0.0426 S22: -0.0576 S23: -0.0245 REMARK 3 S31: -0.0495 S32: 0.0847 S33: -0.0034 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 193:203) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3345 7.3944 35.2195 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0593 REMARK 3 T33: 0.0680 T12: 0.0114 REMARK 3 T13: 0.0083 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0845 L22: 0.4837 REMARK 3 L33: 0.2096 L12: 0.1318 REMARK 3 L13: 0.0619 L23: -0.1167 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0944 S13: -0.0186 REMARK 3 S21: -0.0830 S22: 0.0376 S23: 0.1393 REMARK 3 S31: -0.0352 S32: -0.0358 S33: 0.0182 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 204:210) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4131 10.1298 22.8534 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.0464 REMARK 3 T33: 0.0379 T12: -0.0102 REMARK 3 T13: -0.0029 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.4975 L22: 0.7087 REMARK 3 L33: 0.5235 L12: 0.5273 REMARK 3 L13: 0.1388 L23: 0.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.1059 S13: 0.0569 REMARK 3 S21: 0.0385 S22: -0.0342 S23: 0.1112 REMARK 3 S31: -0.0745 S32: -0.1211 S33: -0.0234 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 211:216) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6128 3.1150 16.1284 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0900 REMARK 3 T33: 0.0757 T12: 0.0107 REMARK 3 T13: 0.0111 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.2000 L22: 0.7072 REMARK 3 L33: 1.4092 L12: 0.0205 REMARK 3 L13: 0.4741 L23: 0.2039 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.0574 S13: 0.0019 REMARK 3 S21: -0.0079 S22: -0.0692 S23: 0.0661 REMARK 3 S31: -0.1510 S32: 0.1265 S33: 0.0912 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 217:224) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7481 6.3616 18.2825 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0685 REMARK 3 T33: 0.0802 T12: 0.0156 REMARK 3 T13: -0.0068 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4784 L22: 0.5306 REMARK 3 L33: 0.0847 L12: -0.0590 REMARK 3 L13: -0.0425 L23: -0.1352 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0046 S13: 0.0337 REMARK 3 S21: -0.4205 S22: 0.0213 S23: 0.0774 REMARK 3 S31: 0.2441 S32: 0.0857 S33: 0.0293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20539 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 23.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1KQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1500 SODIUM ACETATE REMARK 280 TRIHYDRATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.46150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 98 -5.37 75.29 REMARK 500 ASP A 100 13.65 -144.07 REMARK 500 ASN A 194 96.60 -160.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DRV RELATED DB: PDB REMARK 900 CELL ATTACHMENT PROTEIN VP8* OF A HUMAN ROTAVIRUS BOUND TO A-TYPE REMARK 900 HISTO-BLOOD GROUP ANTIGEN TRISACCHARIDE REMARK 900 RELATED ID: 4DS0 RELATED DB: PDB REMARK 900 CELL ATTACHMENT PROTEIN VP8* OF A HUMAN ROTAVIRUS SPECIFICALLY REMARK 900 INTERACTS WITH A-TYPE HISTO-BLOOD GROUP ANTIGEN DBREF 4DRR A 64 224 UNP Q86169 Q86169_9REOV 64 224 SEQADV 4DRR GLY A 62 UNP Q86169 EXPRESSION TAG SEQADV 4DRR SER A 63 UNP Q86169 EXPRESSION TAG SEQRES 1 A 163 GLY SER THR LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 A 163 ASN LEU PRO ILE ASP TYR TRP MET LEU ILE ALA PRO THR SEQRES 3 A 163 GLN ILE GLY ARG VAL ALA GLU GLY THR ASN THR THR ASP SEQRES 4 A 163 ARG TRP PHE ALA CYS VAL LEU VAL GLU PRO ASN VAL GLN SEQRES 5 A 163 ASN THR GLN ARG GLU TYR VAL LEU ASP GLY GLN THR VAL SEQRES 6 A 163 GLN LEU GLN VAL SER ASN ASN SER SER THR LEU TRP LYS SEQRES 7 A 163 PHE ILE LEU PHE ILE LYS LEU GLU LYS ASN GLY ALA TYR SEQRES 8 A 163 SER GLN TYR SER THR LEU SER THR SER ASN LYS LEU CYS SEQRES 9 A 163 ALA TRP MET LYS ARG GLU GLY ARG VAL TYR TRP TYR ALA SEQRES 10 A 163 GLY THR THR PRO ASN ALA SER GLU SER TYR TYR LEU THR SEQRES 11 A 163 ILE ASN ASN ASP ASN SER ASN VAL SER CYS ASP ALA GLU SEQRES 12 A 163 PHE TYR LEU ILE PRO ARG SER GLN THR GLU LEU CYS THR SEQRES 13 A 163 GLN TYR ILE ASN ASN GLY LEU HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *319(H2 O) HELIX 1 1 GLN A 212 GLY A 223 1 12 SHEET 1 A11 ASP A 66 TYR A 69 0 SHEET 2 A11 PHE A 205 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 A11 TYR A 80 ILE A 84 -1 N TRP A 81 O ILE A 208 SHEET 4 A11 CYS A 165 ARG A 170 -1 O CYS A 165 N ILE A 84 SHEET 5 A11 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 A11 SER A 153 THR A 160 1 N SER A 159 O GLY A 179 SHEET 7 A11 TRP A 138 LYS A 145 -1 N LEU A 142 O SER A 156 SHEET 8 A11 TRP A 102 VAL A 108 -1 N ALA A 104 O PHE A 143 SHEET 9 A11 GLY A 90 THR A 96 -1 N GLY A 95 O PHE A 103 SHEET 10 A11 ASN A 198 CYS A 201 -1 O SER A 200 N GLU A 94 SHEET 11 A11 THR A 72 PHE A 74 -1 N THR A 72 O CYS A 201 SHEET 1 B 6 ASP A 66 TYR A 69 0 SHEET 2 B 6 PHE A 205 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 B 6 TYR A 80 ILE A 84 -1 N TRP A 81 O ILE A 208 SHEET 4 B 6 CYS A 165 ARG A 170 -1 O CYS A 165 N ILE A 84 SHEET 5 B 6 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 B 6 SER A 185 THR A 191 -1 O SER A 185 N ALA A 178 SHEET 1 C 2 VAL A 112 LEU A 121 0 SHEET 2 C 2 GLN A 124 ASN A 132 -1 O VAL A 126 N TYR A 119 LINK OG SER A 131 NA NA A 301 1555 1555 3.08 CISPEP 1 GLY A 67 PRO A 68 0 0.52 CISPEP 2 THR A 181 PRO A 182 0 4.20 SITE 1 AC1 3 SER A 131 ASN A 133 LYS A 139 CRYST1 43.758 34.923 44.096 90.00 95.46 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022853 0.000000 0.002184 0.00000 SCALE2 0.000000 0.028634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022781 0.00000