data_4DS0
#
_entry.id 4DS0
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4DS0 pdb_00004ds0 10.2210/pdb4ds0/pdb
RCSB RCSB070708 ? ?
WWPDB D_1000070708 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 4DRR 'Cell attachment protein VP8* of a human rotavirus' unspecified
PDB 4DRV 'Cell attachment protein VP8* of a human rotavirus bound to A-type histo-blood group antigen trisaccharide' unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4DS0
_pdbx_database_status.recvd_initial_deposition_date 2012-02-17
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hu, L.' 1
'Crawford, S.E.' 2
'Czako, R.' 3
'Cortes-Penfield, N.W.' 4
'Smith, D.F.' 5
'Le Pendu, J.' 6
'Estes, M.K.' 7
'Prasad, B.V.V.' 8
#
_citation.id primary
_citation.title
'Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen.'
_citation.journal_abbrev Nature
_citation.journal_volume 485
_citation.page_first 256
_citation.page_last 259
_citation.year 2012
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 22504179
_citation.pdbx_database_id_DOI 10.1038/nature10996
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hu, L.' 1 ?
primary 'Crawford, S.E.' 2 ?
primary 'Czako, R.' 3 ?
primary 'Cortes-Penfield, N.W.' 4 ?
primary 'Smith, D.F.' 5 ?
primary 'Le Pendu, J.' 6 ?
primary 'Estes, M.K.' 7 ?
primary 'Prasad, B.V.' 8 ?
#
_cell.entry_id 4DS0
_cell.length_a 43.750
_cell.length_b 35.540
_cell.length_c 44.060
_cell.angle_alpha 90.00
_cell.angle_beta 94.85
_cell.angle_gamma 90.00
_cell.Z_PDB 2
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4DS0
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Outer capsid protein VP4' 18567.623 1 ? ? 'UNP residues 64-224' ?
2 branched man
;alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
732.682 1 ? ? ? ?
3 water nat water 18.015 273 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Rotavirus cell attachment protein VP8*'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GSTLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFI
LFIKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYIN
NGL
;
_entity_poly.pdbx_seq_one_letter_code_can
;GSTLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFI
LFIKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYIN
NGL
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 SER n
1 3 THR n
1 4 LEU n
1 5 ASP n
1 6 GLY n
1 7 PRO n
1 8 TYR n
1 9 GLN n
1 10 PRO n
1 11 THR n
1 12 THR n
1 13 PHE n
1 14 ASN n
1 15 LEU n
1 16 PRO n
1 17 ILE n
1 18 ASP n
1 19 TYR n
1 20 TRP n
1 21 MET n
1 22 LEU n
1 23 ILE n
1 24 ALA n
1 25 PRO n
1 26 THR n
1 27 GLN n
1 28 ILE n
1 29 GLY n
1 30 ARG n
1 31 VAL n
1 32 ALA n
1 33 GLU n
1 34 GLY n
1 35 THR n
1 36 ASN n
1 37 THR n
1 38 THR n
1 39 ASP n
1 40 ARG n
1 41 TRP n
1 42 PHE n
1 43 ALA n
1 44 CYS n
1 45 VAL n
1 46 LEU n
1 47 VAL n
1 48 GLU n
1 49 PRO n
1 50 ASN n
1 51 VAL n
1 52 GLN n
1 53 ASN n
1 54 THR n
1 55 GLN n
1 56 ARG n
1 57 GLU n
1 58 TYR n
1 59 VAL n
1 60 LEU n
1 61 ASP n
1 62 GLY n
1 63 GLN n
1 64 THR n
1 65 VAL n
1 66 GLN n
1 67 LEU n
1 68 GLN n
1 69 VAL n
1 70 SER n
1 71 ASN n
1 72 ASN n
1 73 SER n
1 74 SER n
1 75 THR n
1 76 LEU n
1 77 TRP n
1 78 LYS n
1 79 PHE n
1 80 ILE n
1 81 LEU n
1 82 PHE n
1 83 ILE n
1 84 LYS n
1 85 LEU n
1 86 GLU n
1 87 LYS n
1 88 ASN n
1 89 GLY n
1 90 ALA n
1 91 TYR n
1 92 SER n
1 93 GLN n
1 94 TYR n
1 95 SER n
1 96 THR n
1 97 LEU n
1 98 SER n
1 99 THR n
1 100 SER n
1 101 ASN n
1 102 LYS n
1 103 LEU n
1 104 CYS n
1 105 ALA n
1 106 TRP n
1 107 MET n
1 108 LYS n
1 109 ARG n
1 110 GLU n
1 111 GLY n
1 112 ARG n
1 113 VAL n
1 114 TYR n
1 115 TRP n
1 116 TYR n
1 117 ALA n
1 118 GLY n
1 119 THR n
1 120 THR n
1 121 PRO n
1 122 ASN n
1 123 ALA n
1 124 SER n
1 125 GLU n
1 126 SER n
1 127 TYR n
1 128 TYR n
1 129 LEU n
1 130 THR n
1 131 ILE n
1 132 ASN n
1 133 ASN n
1 134 ASP n
1 135 ASN n
1 136 SER n
1 137 ASN n
1 138 VAL n
1 139 SER n
1 140 CYS n
1 141 ASP n
1 142 ALA n
1 143 GLU n
1 144 PHE n
1 145 TYR n
1 146 LEU n
1 147 ILE n
1 148 PRO n
1 149 ARG n
1 150 SER n
1 151 GLN n
1 152 THR n
1 153 GLU n
1 154 LEU n
1 155 CYS n
1 156 THR n
1 157 GLN n
1 158 TYR n
1 159 ILE n
1 160 ASN n
1 161 ASN n
1 162 GLY n
1 163 LEU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene VP4
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Rotavirus sp.'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10970
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code Q86169_9REOV
_struct_ref.pdbx_db_accession Q86169
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFILF
IKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYINNG
L
;
_struct_ref.pdbx_align_begin 64
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4DS0
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 3
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 163
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q86169
_struct_ref_seq.db_align_beg 64
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 224
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 64
_struct_ref_seq.pdbx_auth_seq_align_end 224
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 4DS0 GLY A 1 ? UNP Q86169 ? ? 'expression tag' 62 1
1 4DS0 SER A 2 ? UNP Q86169 ? ? 'expression tag' 63 2
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose
;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
;
'C8 H15 N O6' 221.208
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose
'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose'
'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 4DS0
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.84
_exptl_crystal.density_percent_sol 33.09
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.pdbx_details
;30% PEG 1500
Sodium acetate trihydrate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS HTC'
_diffrn_detector.pdbx_collection_date 2010-11-24
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.54
#
_reflns.entry_id 4DS0
_reflns.observed_criterion_sigma_I 2.0
_reflns.observed_criterion_sigma_F 2.0
_reflns.d_resolution_low 27.6
_reflns.d_resolution_high 1.56
_reflns.number_obs 19647
_reflns.number_all 19647
_reflns.percent_possible_obs 92.6
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.56
_reflns_shell.d_res_low 1.64
_reflns_shell.percent_possible_all 86.8
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4DS0
_refine.ls_number_reflns_obs 18211
_refine.ls_number_reflns_all 18211
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.35
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 27.6
_refine.ls_d_res_high 1.56
_refine.ls_percent_reflns_obs 92.71
_refine.ls_R_factor_obs 0.1577
_refine.ls_R_factor_all 0.1577
_refine.ls_R_factor_R_work 0.1561
_refine.ls_R_factor_R_free 0.1873
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.16
_refine.ls_number_reflns_R_free 939
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] -1.4105
_refine.aniso_B[2][2] 2.3800
_refine.aniso_B[3][3] -0.9696
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] -0.5005
_refine.aniso_B[2][3] -0.0000
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_ksol 0.336
_refine.solvent_model_param_bsol 26.669
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 1KQR
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details Random
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.19
_refine.pdbx_overall_phase_error 17.64
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1307
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 50
_refine_hist.number_atoms_solvent 273
_refine_hist.number_atoms_total 1630
_refine_hist.d_res_high 1.56
_refine_hist.d_res_low 27.6
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 0.006 ? ? 1392 ? 'X-RAY DIFFRACTION'
f_angle_d 1.074 ? ? 1908 ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 30.201 ? ? 544 ? 'X-RAY DIFFRACTION'
f_chiral_restr 0.068 ? ? 223 ? 'X-RAY DIFFRACTION'
f_plane_restr 0.004 ? ? 237 ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_all
_refine_ls_shell.R_factor_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
. 1.56 1.6370 2298 0.1692 87.00 0.2094 . . 114 . . . . 'X-RAY DIFFRACTION'
. 1.6370 1.7395 2368 0.1550 90.00 0.2325 . . 111 . . . . 'X-RAY DIFFRACTION'
. 1.7395 1.8738 2431 0.1558 91.00 0.2084 . . 124 . . . . 'X-RAY DIFFRACTION'
. 1.8738 2.0623 2438 0.1448 93.00 0.1689 . . 158 . . . . 'X-RAY DIFFRACTION'
. 2.0623 2.3606 2517 0.1433 94.00 0.1773 . . 129 . . . . 'X-RAY DIFFRACTION'
. 2.3606 2.9736 2552 0.1514 96.00 0.1996 . . 152 . . . . 'X-RAY DIFFRACTION'
. 2.9736 27.6276 2668 0.1322 98.00 0.1556 . . 151 . . . . 'X-RAY DIFFRACTION'
#
_struct.entry_id 4DS0
_struct.title
'Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4DS0
_struct_keywords.pdbx_keywords 'VIRAL PROTEIN'
_struct_keywords.text 'OTAVIRUS, VIRAL PROTEIN, CELL ATTACHMENT FACTOR, HISTO BLOOD GROUP ANTIGEN, GALECTIN-FOLD'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
_struct_conf.conf_type_id HELX_P
_struct_conf.id HELX_P1
_struct_conf.pdbx_PDB_helix_id 1
_struct_conf.beg_label_comp_id GLN
_struct_conf.beg_label_asym_id A
_struct_conf.beg_label_seq_id 151
_struct_conf.pdbx_beg_PDB_ins_code ?
_struct_conf.end_label_comp_id GLY
_struct_conf.end_label_asym_id A
_struct_conf.end_label_seq_id 162
_struct_conf.pdbx_end_PDB_ins_code ?
_struct_conf.beg_auth_comp_id GLN
_struct_conf.beg_auth_asym_id A
_struct_conf.beg_auth_seq_id 212
_struct_conf.end_auth_comp_id GLY
_struct_conf.end_auth_asym_id A
_struct_conf.end_auth_seq_id 223
_struct_conf.pdbx_PDB_helix_class 1
_struct_conf.details ?
_struct_conf.pdbx_PDB_helix_length 12
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.400 sing ?
covale2 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 2 B FUC 3 1_555 ? ? ? ? ? ? ? 1.381 ? ?
covale3 covale both ? B GAL . O3 ? ? ? 1_555 B A2G . C1 ? ? B GAL 2 B A2G 4 1_555 ? ? ? ? ? ? ? 1.403 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLY 6 A . ? GLY 67 A PRO 7 A ? PRO 68 A 1 3.70
2 THR 120 A . ? THR 181 A PRO 121 A ? PRO 182 A 1 5.57
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 11 ?
B ? 6 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? parallel
A 6 7 ? anti-parallel
A 7 8 ? anti-parallel
A 8 9 ? anti-parallel
A 9 10 ? anti-parallel
A 10 11 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ASP A 5 ? TYR A 8 ? ASP A 66 TYR A 69
A 2 PHE A 144 ? PRO A 148 ? PHE A 205 PRO A 209
A 3 TYR A 19 ? ILE A 23 ? TYR A 80 ILE A 84
A 4 CYS A 104 ? ARG A 109 ? CYS A 165 ARG A 170
A 5 ARG A 112 ? THR A 119 ? ARG A 173 THR A 180
A 6 SER A 92 ? THR A 99 ? SER A 153 THR A 160
A 7 TRP A 77 ? LYS A 84 ? TRP A 138 LYS A 145
A 8 TRP A 41 ? VAL A 47 ? TRP A 102 VAL A 108
A 9 GLY A 29 ? THR A 35 ? GLY A 90 THR A 96
A 10 ASN A 137 ? CYS A 140 ? ASN A 198 CYS A 201
A 11 THR A 12 ? PHE A 13 ? THR A 73 PHE A 74
B 1 ASP A 5 ? TYR A 8 ? ASP A 66 TYR A 69
B 2 PHE A 144 ? PRO A 148 ? PHE A 205 PRO A 209
B 3 TYR A 19 ? ILE A 23 ? TYR A 80 ILE A 84
B 4 CYS A 104 ? ARG A 109 ? CYS A 165 ARG A 170
B 5 ARG A 112 ? THR A 119 ? ARG A 173 THR A 180
B 6 SER A 124 ? THR A 130 ? SER A 185 THR A 191
C 1 VAL A 51 ? LEU A 60 ? VAL A 112 LEU A 121
C 2 GLN A 63 ? ASN A 71 ? GLN A 124 ASN A 132
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N TYR A 8 ? N TYR A 69 O PHE A 144 ? O PHE A 205
A 2 3 O ILE A 147 ? O ILE A 208 N TRP A 20 ? N TRP A 81
A 3 4 N MET A 21 ? N MET A 82 O TRP A 106 ? O TRP A 167
A 4 5 N MET A 107 ? N MET A 168 O TYR A 114 ? O TYR A 175
A 5 6 O GLY A 118 ? O GLY A 179 N SER A 98 ? N SER A 159
A 6 7 O LEU A 97 ? O LEU A 158 N PHE A 79 ? N PHE A 140
A 7 8 O PHE A 82 ? O PHE A 143 N ALA A 43 ? N ALA A 104
A 8 9 O LEU A 46 ? O LEU A 107 N GLY A 29 ? N GLY A 90
A 9 10 N GLU A 33 ? N GLU A 94 O SER A 139 ? O SER A 200
A 10 11 O VAL A 138 ? O VAL A 199 N PHE A 13 ? N PHE A 74
B 1 2 N TYR A 8 ? N TYR A 69 O PHE A 144 ? O PHE A 205
B 2 3 O ILE A 147 ? O ILE A 208 N TRP A 20 ? N TRP A 81
B 3 4 N MET A 21 ? N MET A 82 O TRP A 106 ? O TRP A 167
B 4 5 N MET A 107 ? N MET A 168 O TYR A 114 ? O TYR A 175
B 5 6 N ALA A 117 ? N ALA A 178 O SER A 124 ? O SER A 185
C 1 2 N TYR A 58 ? N TYR A 119 O VAL A 65 ? O VAL A 126
#
_database_PDB_matrix.entry_id 4DS0
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 4DS0
_atom_sites.fract_transf_matrix[1][1] 0.022857
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.001939
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.028137
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022778
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 62 62 GLY GLY A . n
A 1 2 SER 2 63 63 SER SER A . n
A 1 3 THR 3 64 64 THR THR A . n
A 1 4 LEU 4 65 65 LEU LEU A . n
A 1 5 ASP 5 66 66 ASP ASP A . n
A 1 6 GLY 6 67 67 GLY GLY A . n
A 1 7 PRO 7 68 68 PRO PRO A . n
A 1 8 TYR 8 69 69 TYR TYR A . n
A 1 9 GLN 9 70 70 GLN GLN A . n
A 1 10 PRO 10 71 71 PRO PRO A . n
A 1 11 THR 11 72 72 THR THR A . n
A 1 12 THR 12 73 73 THR THR A . n
A 1 13 PHE 13 74 74 PHE PHE A . n
A 1 14 ASN 14 75 75 ASN ASN A . n
A 1 15 LEU 15 76 76 LEU LEU A . n
A 1 16 PRO 16 77 77 PRO PRO A . n
A 1 17 ILE 17 78 78 ILE ILE A . n
A 1 18 ASP 18 79 79 ASP ASP A . n
A 1 19 TYR 19 80 80 TYR TYR A . n
A 1 20 TRP 20 81 81 TRP TRP A . n
A 1 21 MET 21 82 82 MET MET A . n
A 1 22 LEU 22 83 83 LEU LEU A . n
A 1 23 ILE 23 84 84 ILE ILE A . n
A 1 24 ALA 24 85 85 ALA ALA A . n
A 1 25 PRO 25 86 86 PRO PRO A . n
A 1 26 THR 26 87 87 THR THR A . n
A 1 27 GLN 27 88 88 GLN GLN A . n
A 1 28 ILE 28 89 89 ILE ILE A . n
A 1 29 GLY 29 90 90 GLY GLY A . n
A 1 30 ARG 30 91 91 ARG ARG A . n
A 1 31 VAL 31 92 92 VAL VAL A . n
A 1 32 ALA 32 93 93 ALA ALA A . n
A 1 33 GLU 33 94 94 GLU GLU A . n
A 1 34 GLY 34 95 95 GLY GLY A . n
A 1 35 THR 35 96 96 THR THR A . n
A 1 36 ASN 36 97 97 ASN ASN A . n
A 1 37 THR 37 98 98 THR THR A . n
A 1 38 THR 38 99 99 THR THR A . n
A 1 39 ASP 39 100 100 ASP ASP A . n
A 1 40 ARG 40 101 101 ARG ARG A . n
A 1 41 TRP 41 102 102 TRP TRP A . n
A 1 42 PHE 42 103 103 PHE PHE A . n
A 1 43 ALA 43 104 104 ALA ALA A . n
A 1 44 CYS 44 105 105 CYS CYS A . n
A 1 45 VAL 45 106 106 VAL VAL A . n
A 1 46 LEU 46 107 107 LEU LEU A . n
A 1 47 VAL 47 108 108 VAL VAL A . n
A 1 48 GLU 48 109 109 GLU GLU A . n
A 1 49 PRO 49 110 110 PRO PRO A . n
A 1 50 ASN 50 111 111 ASN ASN A . n
A 1 51 VAL 51 112 112 VAL VAL A . n
A 1 52 GLN 52 113 113 GLN GLN A . n
A 1 53 ASN 53 114 114 ASN ASN A . n
A 1 54 THR 54 115 115 THR THR A . n
A 1 55 GLN 55 116 116 GLN GLN A . n
A 1 56 ARG 56 117 117 ARG ARG A . n
A 1 57 GLU 57 118 118 GLU GLU A . n
A 1 58 TYR 58 119 119 TYR TYR A . n
A 1 59 VAL 59 120 120 VAL VAL A . n
A 1 60 LEU 60 121 121 LEU LEU A . n
A 1 61 ASP 61 122 122 ASP ASP A . n
A 1 62 GLY 62 123 123 GLY GLY A . n
A 1 63 GLN 63 124 124 GLN GLN A . n
A 1 64 THR 64 125 125 THR THR A . n
A 1 65 VAL 65 126 126 VAL VAL A . n
A 1 66 GLN 66 127 127 GLN GLN A . n
A 1 67 LEU 67 128 128 LEU LEU A . n
A 1 68 GLN 68 129 129 GLN GLN A . n
A 1 69 VAL 69 130 130 VAL VAL A . n
A 1 70 SER 70 131 131 SER SER A . n
A 1 71 ASN 71 132 132 ASN ASN A . n
A 1 72 ASN 72 133 133 ASN ASN A . n
A 1 73 SER 73 134 134 SER SER A . n
A 1 74 SER 74 135 135 SER SER A . n
A 1 75 THR 75 136 136 THR THR A . n
A 1 76 LEU 76 137 137 LEU LEU A . n
A 1 77 TRP 77 138 138 TRP TRP A . n
A 1 78 LYS 78 139 139 LYS LYS A . n
A 1 79 PHE 79 140 140 PHE PHE A . n
A 1 80 ILE 80 141 141 ILE ILE A . n
A 1 81 LEU 81 142 142 LEU LEU A . n
A 1 82 PHE 82 143 143 PHE PHE A . n
A 1 83 ILE 83 144 144 ILE ILE A . n
A 1 84 LYS 84 145 145 LYS LYS A . n
A 1 85 LEU 85 146 146 LEU LEU A . n
A 1 86 GLU 86 147 147 GLU GLU A . n
A 1 87 LYS 87 148 148 LYS LYS A . n
A 1 88 ASN 88 149 149 ASN ASN A . n
A 1 89 GLY 89 150 150 GLY GLY A . n
A 1 90 ALA 90 151 151 ALA ALA A . n
A 1 91 TYR 91 152 152 TYR TYR A . n
A 1 92 SER 92 153 153 SER SER A . n
A 1 93 GLN 93 154 154 GLN GLN A . n
A 1 94 TYR 94 155 155 TYR TYR A . n
A 1 95 SER 95 156 156 SER SER A . n
A 1 96 THR 96 157 157 THR THR A . n
A 1 97 LEU 97 158 158 LEU LEU A . n
A 1 98 SER 98 159 159 SER SER A . n
A 1 99 THR 99 160 160 THR THR A . n
A 1 100 SER 100 161 161 SER SER A . n
A 1 101 ASN 101 162 162 ASN ASN A . n
A 1 102 LYS 102 163 163 LYS LYS A . n
A 1 103 LEU 103 164 164 LEU LEU A . n
A 1 104 CYS 104 165 165 CYS CYS A . n
A 1 105 ALA 105 166 166 ALA ALA A . n
A 1 106 TRP 106 167 167 TRP TRP A . n
A 1 107 MET 107 168 168 MET MET A . n
A 1 108 LYS 108 169 169 LYS LYS A . n
A 1 109 ARG 109 170 170 ARG ARG A . n
A 1 110 GLU 110 171 171 GLU GLU A . n
A 1 111 GLY 111 172 172 GLY GLY A . n
A 1 112 ARG 112 173 173 ARG ARG A . n
A 1 113 VAL 113 174 174 VAL VAL A . n
A 1 114 TYR 114 175 175 TYR TYR A . n
A 1 115 TRP 115 176 176 TRP TRP A . n
A 1 116 TYR 116 177 177 TYR TYR A . n
A 1 117 ALA 117 178 178 ALA ALA A . n
A 1 118 GLY 118 179 179 GLY GLY A . n
A 1 119 THR 119 180 180 THR THR A . n
A 1 120 THR 120 181 181 THR THR A . n
A 1 121 PRO 121 182 182 PRO PRO A . n
A 1 122 ASN 122 183 183 ASN ASN A . n
A 1 123 ALA 123 184 184 ALA ALA A . n
A 1 124 SER 124 185 185 SER SER A . n
A 1 125 GLU 125 186 186 GLU GLU A . n
A 1 126 SER 126 187 187 SER SER A . n
A 1 127 TYR 127 188 188 TYR TYR A . n
A 1 128 TYR 128 189 189 TYR TYR A . n
A 1 129 LEU 129 190 190 LEU LEU A . n
A 1 130 THR 130 191 191 THR THR A . n
A 1 131 ILE 131 192 192 ILE ILE A . n
A 1 132 ASN 132 193 193 ASN ASN A . n
A 1 133 ASN 133 194 194 ASN ASN A . n
A 1 134 ASP 134 195 195 ASP ASP A . n
A 1 135 ASN 135 196 196 ASN ASN A . n
A 1 136 SER 136 197 197 SER SER A . n
A 1 137 ASN 137 198 198 ASN ASN A . n
A 1 138 VAL 138 199 199 VAL VAL A . n
A 1 139 SER 139 200 200 SER SER A . n
A 1 140 CYS 140 201 201 CYS CYS A . n
A 1 141 ASP 141 202 202 ASP ASP A . n
A 1 142 ALA 142 203 203 ALA ALA A . n
A 1 143 GLU 143 204 204 GLU GLU A . n
A 1 144 PHE 144 205 205 PHE PHE A . n
A 1 145 TYR 145 206 206 TYR TYR A . n
A 1 146 LEU 146 207 207 LEU LEU A . n
A 1 147 ILE 147 208 208 ILE ILE A . n
A 1 148 PRO 148 209 209 PRO PRO A . n
A 1 149 ARG 149 210 210 ARG ARG A . n
A 1 150 SER 150 211 211 SER SER A . n
A 1 151 GLN 151 212 212 GLN GLN A . n
A 1 152 THR 152 213 213 THR THR A . n
A 1 153 GLU 153 214 214 GLU GLU A . n
A 1 154 LEU 154 215 215 LEU LEU A . n
A 1 155 CYS 155 216 216 CYS CYS A . n
A 1 156 THR 156 217 217 THR THR A . n
A 1 157 GLN 157 218 218 GLN GLN A . n
A 1 158 TYR 158 219 219 TYR TYR A . n
A 1 159 ILE 159 220 220 ILE ILE A . n
A 1 160 ASN 160 221 221 ASN ASN A . n
A 1 161 ASN 161 222 222 ASN ASN A . n
A 1 162 GLY 162 223 223 GLY GLY A . n
A 1 163 LEU 163 224 224 LEU LEU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HOH 1 401 1 HOH HOH A .
C 3 HOH 2 402 2 HOH HOH A .
C 3 HOH 3 403 3 HOH HOH A .
C 3 HOH 4 404 4 HOH HOH A .
C 3 HOH 5 405 5 HOH HOH A .
C 3 HOH 6 406 6 HOH HOH A .
C 3 HOH 7 407 7 HOH HOH A .
C 3 HOH 8 408 8 HOH HOH A .
C 3 HOH 9 409 9 HOH HOH A .
C 3 HOH 10 410 10 HOH HOH A .
C 3 HOH 11 411 11 HOH HOH A .
C 3 HOH 12 412 12 HOH HOH A .
C 3 HOH 13 413 13 HOH HOH A .
C 3 HOH 14 414 14 HOH HOH A .
C 3 HOH 15 415 15 HOH HOH A .
C 3 HOH 16 416 16 HOH HOH A .
C 3 HOH 17 417 17 HOH HOH A .
C 3 HOH 18 418 18 HOH HOH A .
C 3 HOH 19 419 19 HOH HOH A .
C 3 HOH 20 420 20 HOH HOH A .
C 3 HOH 21 421 21 HOH HOH A .
C 3 HOH 22 422 22 HOH HOH A .
C 3 HOH 23 423 23 HOH HOH A .
C 3 HOH 24 424 24 HOH HOH A .
C 3 HOH 25 425 25 HOH HOH A .
C 3 HOH 26 426 26 HOH HOH A .
C 3 HOH 27 427 27 HOH HOH A .
C 3 HOH 28 428 28 HOH HOH A .
C 3 HOH 29 429 29 HOH HOH A .
C 3 HOH 30 430 30 HOH HOH A .
C 3 HOH 31 431 31 HOH HOH A .
C 3 HOH 32 432 32 HOH HOH A .
C 3 HOH 33 433 33 HOH HOH A .
C 3 HOH 34 434 34 HOH HOH A .
C 3 HOH 35 435 35 HOH HOH A .
C 3 HOH 36 436 36 HOH HOH A .
C 3 HOH 37 437 37 HOH HOH A .
C 3 HOH 38 438 38 HOH HOH A .
C 3 HOH 39 439 39 HOH HOH A .
C 3 HOH 40 440 40 HOH HOH A .
C 3 HOH 41 441 41 HOH HOH A .
C 3 HOH 42 442 42 HOH HOH A .
C 3 HOH 43 443 43 HOH HOH A .
C 3 HOH 44 444 44 HOH HOH A .
C 3 HOH 45 445 45 HOH HOH A .
C 3 HOH 46 446 46 HOH HOH A .
C 3 HOH 47 447 47 HOH HOH A .
C 3 HOH 48 448 48 HOH HOH A .
C 3 HOH 49 449 49 HOH HOH A .
C 3 HOH 50 450 50 HOH HOH A .
C 3 HOH 51 451 51 HOH HOH A .
C 3 HOH 52 452 52 HOH HOH A .
C 3 HOH 53 453 53 HOH HOH A .
C 3 HOH 54 454 54 HOH HOH A .
C 3 HOH 55 455 55 HOH HOH A .
C 3 HOH 56 456 56 HOH HOH A .
C 3 HOH 57 457 57 HOH HOH A .
C 3 HOH 58 458 58 HOH HOH A .
C 3 HOH 59 459 59 HOH HOH A .
C 3 HOH 60 460 60 HOH HOH A .
C 3 HOH 61 461 61 HOH HOH A .
C 3 HOH 62 462 62 HOH HOH A .
C 3 HOH 63 463 63 HOH HOH A .
C 3 HOH 64 464 64 HOH HOH A .
C 3 HOH 65 465 65 HOH HOH A .
C 3 HOH 66 466 66 HOH HOH A .
C 3 HOH 67 467 67 HOH HOH A .
C 3 HOH 68 468 68 HOH HOH A .
C 3 HOH 69 469 69 HOH HOH A .
C 3 HOH 70 470 70 HOH HOH A .
C 3 HOH 71 471 71 HOH HOH A .
C 3 HOH 72 472 72 HOH HOH A .
C 3 HOH 73 473 73 HOH HOH A .
C 3 HOH 74 474 74 HOH HOH A .
C 3 HOH 75 475 75 HOH HOH A .
C 3 HOH 76 476 76 HOH HOH A .
C 3 HOH 77 477 77 HOH HOH A .
C 3 HOH 78 478 78 HOH HOH A .
C 3 HOH 79 479 79 HOH HOH A .
C 3 HOH 80 480 80 HOH HOH A .
C 3 HOH 81 481 81 HOH HOH A .
C 3 HOH 82 482 82 HOH HOH A .
C 3 HOH 83 483 83 HOH HOH A .
C 3 HOH 84 484 84 HOH HOH A .
C 3 HOH 85 485 85 HOH HOH A .
C 3 HOH 86 486 86 HOH HOH A .
C 3 HOH 87 487 87 HOH HOH A .
C 3 HOH 88 488 88 HOH HOH A .
C 3 HOH 89 489 89 HOH HOH A .
C 3 HOH 90 490 90 HOH HOH A .
C 3 HOH 91 491 91 HOH HOH A .
C 3 HOH 92 492 92 HOH HOH A .
C 3 HOH 93 493 93 HOH HOH A .
C 3 HOH 94 494 94 HOH HOH A .
C 3 HOH 95 495 95 HOH HOH A .
C 3 HOH 96 496 96 HOH HOH A .
C 3 HOH 97 497 97 HOH HOH A .
C 3 HOH 98 498 98 HOH HOH A .
C 3 HOH 99 499 99 HOH HOH A .
C 3 HOH 100 500 100 HOH HOH A .
C 3 HOH 101 501 101 HOH HOH A .
C 3 HOH 102 502 102 HOH HOH A .
C 3 HOH 103 503 103 HOH HOH A .
C 3 HOH 104 504 104 HOH HOH A .
C 3 HOH 105 505 105 HOH HOH A .
C 3 HOH 106 506 106 HOH HOH A .
C 3 HOH 107 507 107 HOH HOH A .
C 3 HOH 108 508 108 HOH HOH A .
C 3 HOH 109 509 109 HOH HOH A .
C 3 HOH 110 510 110 HOH HOH A .
C 3 HOH 111 511 111 HOH HOH A .
C 3 HOH 112 512 112 HOH HOH A .
C 3 HOH 113 513 113 HOH HOH A .
C 3 HOH 114 514 114 HOH HOH A .
C 3 HOH 115 515 115 HOH HOH A .
C 3 HOH 116 516 116 HOH HOH A .
C 3 HOH 117 517 117 HOH HOH A .
C 3 HOH 118 518 118 HOH HOH A .
C 3 HOH 119 519 119 HOH HOH A .
C 3 HOH 120 520 120 HOH HOH A .
C 3 HOH 121 521 121 HOH HOH A .
C 3 HOH 122 522 122 HOH HOH A .
C 3 HOH 123 523 123 HOH HOH A .
C 3 HOH 124 524 124 HOH HOH A .
C 3 HOH 125 525 125 HOH HOH A .
C 3 HOH 126 526 126 HOH HOH A .
C 3 HOH 127 527 127 HOH HOH A .
C 3 HOH 128 528 128 HOH HOH A .
C 3 HOH 129 529 129 HOH HOH A .
C 3 HOH 130 530 130 HOH HOH A .
C 3 HOH 131 531 131 HOH HOH A .
C 3 HOH 132 532 132 HOH HOH A .
C 3 HOH 133 533 133 HOH HOH A .
C 3 HOH 134 534 134 HOH HOH A .
C 3 HOH 135 535 135 HOH HOH A .
C 3 HOH 136 536 136 HOH HOH A .
C 3 HOH 137 537 137 HOH HOH A .
C 3 HOH 138 538 138 HOH HOH A .
C 3 HOH 139 539 139 HOH HOH A .
C 3 HOH 140 540 140 HOH HOH A .
C 3 HOH 141 541 141 HOH HOH A .
C 3 HOH 142 542 142 HOH HOH A .
C 3 HOH 143 543 143 HOH HOH A .
C 3 HOH 144 544 144 HOH HOH A .
C 3 HOH 145 545 145 HOH HOH A .
C 3 HOH 146 546 146 HOH HOH A .
C 3 HOH 147 547 147 HOH HOH A .
C 3 HOH 148 548 148 HOH HOH A .
C 3 HOH 149 549 149 HOH HOH A .
C 3 HOH 150 550 150 HOH HOH A .
C 3 HOH 151 551 151 HOH HOH A .
C 3 HOH 152 552 152 HOH HOH A .
C 3 HOH 153 553 153 HOH HOH A .
C 3 HOH 154 554 154 HOH HOH A .
C 3 HOH 155 555 155 HOH HOH A .
C 3 HOH 156 556 156 HOH HOH A .
C 3 HOH 157 557 157 HOH HOH A .
C 3 HOH 158 558 158 HOH HOH A .
C 3 HOH 159 559 159 HOH HOH A .
C 3 HOH 160 560 160 HOH HOH A .
C 3 HOH 161 561 161 HOH HOH A .
C 3 HOH 162 562 162 HOH HOH A .
C 3 HOH 163 563 163 HOH HOH A .
C 3 HOH 164 564 164 HOH HOH A .
C 3 HOH 165 565 165 HOH HOH A .
C 3 HOH 166 566 166 HOH HOH A .
C 3 HOH 167 567 167 HOH HOH A .
C 3 HOH 168 568 168 HOH HOH A .
C 3 HOH 169 569 169 HOH HOH A .
C 3 HOH 170 570 170 HOH HOH A .
C 3 HOH 171 571 171 HOH HOH A .
C 3 HOH 172 572 172 HOH HOH A .
C 3 HOH 173 573 173 HOH HOH A .
C 3 HOH 174 574 174 HOH HOH A .
C 3 HOH 175 575 175 HOH HOH A .
C 3 HOH 176 576 176 HOH HOH A .
C 3 HOH 177 577 177 HOH HOH A .
C 3 HOH 178 578 178 HOH HOH A .
C 3 HOH 179 579 179 HOH HOH A .
C 3 HOH 180 580 180 HOH HOH A .
C 3 HOH 181 581 181 HOH HOH A .
C 3 HOH 182 582 182 HOH HOH A .
C 3 HOH 183 583 183 HOH HOH A .
C 3 HOH 184 584 184 HOH HOH A .
C 3 HOH 185 585 185 HOH HOH A .
C 3 HOH 186 586 186 HOH HOH A .
C 3 HOH 187 587 187 HOH HOH A .
C 3 HOH 188 588 188 HOH HOH A .
C 3 HOH 189 589 189 HOH HOH A .
C 3 HOH 190 590 190 HOH HOH A .
C 3 HOH 191 591 191 HOH HOH A .
C 3 HOH 192 592 192 HOH HOH A .
C 3 HOH 193 593 193 HOH HOH A .
C 3 HOH 194 594 194 HOH HOH A .
C 3 HOH 195 595 195 HOH HOH A .
C 3 HOH 196 596 196 HOH HOH A .
C 3 HOH 197 597 197 HOH HOH A .
C 3 HOH 198 598 198 HOH HOH A .
C 3 HOH 199 599 199 HOH HOH A .
C 3 HOH 200 600 200 HOH HOH A .
C 3 HOH 201 601 201 HOH HOH A .
C 3 HOH 202 602 202 HOH HOH A .
C 3 HOH 203 603 203 HOH HOH A .
C 3 HOH 204 604 204 HOH HOH A .
C 3 HOH 205 605 205 HOH HOH A .
C 3 HOH 206 606 206 HOH HOH A .
C 3 HOH 207 607 207 HOH HOH A .
C 3 HOH 208 608 208 HOH HOH A .
C 3 HOH 209 609 209 HOH HOH A .
C 3 HOH 210 610 210 HOH HOH A .
C 3 HOH 211 611 211 HOH HOH A .
C 3 HOH 212 612 212 HOH HOH A .
C 3 HOH 213 613 213 HOH HOH A .
C 3 HOH 214 614 214 HOH HOH A .
C 3 HOH 215 615 215 HOH HOH A .
C 3 HOH 216 616 216 HOH HOH A .
C 3 HOH 217 617 217 HOH HOH A .
C 3 HOH 218 618 218 HOH HOH A .
C 3 HOH 219 619 219 HOH HOH A .
C 3 HOH 220 620 220 HOH HOH A .
C 3 HOH 221 621 221 HOH HOH A .
C 3 HOH 222 622 222 HOH HOH A .
C 3 HOH 223 623 223 HOH HOH A .
C 3 HOH 224 624 224 HOH HOH A .
C 3 HOH 225 625 225 HOH HOH A .
C 3 HOH 226 626 226 HOH HOH A .
C 3 HOH 227 627 227 HOH HOH A .
C 3 HOH 228 628 228 HOH HOH A .
C 3 HOH 229 629 229 HOH HOH A .
C 3 HOH 230 630 230 HOH HOH A .
C 3 HOH 231 631 231 HOH HOH A .
C 3 HOH 232 632 232 HOH HOH A .
C 3 HOH 233 633 233 HOH HOH A .
C 3 HOH 234 634 234 HOH HOH A .
C 3 HOH 235 635 235 HOH HOH A .
C 3 HOH 236 636 236 HOH HOH A .
C 3 HOH 237 637 237 HOH HOH A .
C 3 HOH 238 638 238 HOH HOH A .
C 3 HOH 239 639 239 HOH HOH A .
C 3 HOH 240 640 240 HOH HOH A .
C 3 HOH 241 641 241 HOH HOH A .
C 3 HOH 242 642 242 HOH HOH A .
C 3 HOH 243 643 243 HOH HOH A .
C 3 HOH 244 644 244 HOH HOH A .
C 3 HOH 245 645 245 HOH HOH A .
C 3 HOH 246 646 246 HOH HOH A .
C 3 HOH 247 647 247 HOH HOH A .
C 3 HOH 248 648 248 HOH HOH A .
C 3 HOH 249 649 249 HOH HOH A .
C 3 HOH 250 650 250 HOH HOH A .
C 3 HOH 251 651 251 HOH HOH A .
C 3 HOH 252 652 252 HOH HOH A .
C 3 HOH 253 653 253 HOH HOH A .
C 3 HOH 254 654 254 HOH HOH A .
C 3 HOH 255 655 255 HOH HOH A .
C 3 HOH 256 656 256 HOH HOH A .
C 3 HOH 257 657 257 HOH HOH A .
C 3 HOH 258 658 258 HOH HOH A .
C 3 HOH 259 659 259 HOH HOH A .
C 3 HOH 260 660 260 HOH HOH A .
C 3 HOH 261 661 261 HOH HOH A .
C 3 HOH 262 662 262 HOH HOH A .
C 3 HOH 263 663 263 HOH HOH A .
C 3 HOH 264 664 264 HOH HOH A .
C 3 HOH 265 665 265 HOH HOH A .
C 3 HOH 266 666 266 HOH HOH A .
C 3 HOH 267 667 267 HOH HOH A .
C 3 HOH 268 668 268 HOH HOH A .
C 3 HOH 269 669 269 HOH HOH A .
C 3 HOH 270 670 270 HOH HOH A .
C 3 HOH 271 671 271 HOH HOH A .
C 3 HOH 272 672 272 HOH HOH A .
C 3 HOH 273 673 273 HOH HOH A .
#
_pdbx_molecule_features.prd_id PRD_900132
_pdbx_molecule_features.name 'Blood group A H type 2 antigen, beta anomer'
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Antigen
_pdbx_molecule_features.details 'oligosaccharide with branches'
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900132
_pdbx_molecule.asym_id B
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-04-11
2 'Structure model' 1 1 2012-05-23
3 'Structure model' 2 0 2020-07-29
4 'Structure model' 2 1 2020-08-05
5 'Structure model' 2 2 2023-09-13
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Atomic model'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 3 'Structure model' 'Derived calculations'
6 3 'Structure model' 'Structure summary'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Data collection'
9 5 'Structure model' 'Database references'
10 5 'Structure model' 'Refinement description'
11 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' atom_site
2 3 'Structure model' chem_comp
3 3 'Structure model' entity
4 3 'Structure model' pdbx_branch_scheme
5 3 'Structure model' pdbx_chem_comp_identifier
6 3 'Structure model' pdbx_entity_branch
7 3 'Structure model' pdbx_entity_branch_descriptor
8 3 'Structure model' pdbx_entity_branch_link
9 3 'Structure model' pdbx_entity_branch_list
10 3 'Structure model' pdbx_entity_nonpoly
11 3 'Structure model' pdbx_nonpoly_scheme
12 3 'Structure model' pdbx_struct_assembly_gen
13 3 'Structure model' struct_asym
14 3 'Structure model' struct_conn
15 3 'Structure model' struct_ref_seq_dif
16 3 'Structure model' struct_site
17 3 'Structure model' struct_site_gen
18 4 'Structure model' pdbx_molecule_features
19 5 'Structure model' chem_comp
20 5 'Structure model' chem_comp_atom
21 5 'Structure model' chem_comp_bond
22 5 'Structure model' database_2
23 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_atom_site.B_iso_or_equiv'
2 3 'Structure model' '_atom_site.Cartn_x'
3 3 'Structure model' '_atom_site.Cartn_y'
4 3 'Structure model' '_atom_site.Cartn_z'
5 3 'Structure model' '_atom_site.auth_asym_id'
6 3 'Structure model' '_atom_site.auth_atom_id'
7 3 'Structure model' '_atom_site.auth_comp_id'
8 3 'Structure model' '_atom_site.auth_seq_id'
9 3 'Structure model' '_atom_site.label_asym_id'
10 3 'Structure model' '_atom_site.label_atom_id'
11 3 'Structure model' '_atom_site.label_comp_id'
12 3 'Structure model' '_atom_site.label_entity_id'
13 3 'Structure model' '_atom_site.type_symbol'
14 3 'Structure model' '_chem_comp.name'
15 3 'Structure model' '_chem_comp.type'
16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
17 3 'Structure model' '_struct_conn.pdbx_dist_value'
18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 3 'Structure model' '_struct_conn.pdbx_value_order'
20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
32 3 'Structure model' '_struct_ref_seq_dif.details'
33 5 'Structure model' '_chem_comp.pdbx_synonyms'
34 5 'Structure model' '_database_2.pdbx_DOI'
35 5 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined 7.7424 12.9514 6.6126 0.0684 0.0458 0.0688 -0.0115 -0.0075 0.0059 1.0549 0.2421 0.2813 -0.4954
0.3228 -0.1497 -0.0464 -0.0212 0.1076 -0.0054 -0.0326 -0.0017 -0.0567 -0.0327 0.0687
'X-RAY DIFFRACTION' 2 ? refined 18.5508 7.2001 18.8323 0.0562 0.0540 0.0511 -0.0208 0.0131 -0.0171 0.2881 0.1726 0.6634 0.1483
0.1537 -0.1627 0.0708 -0.0588 0.0676 0.0486 -0.0241 -0.0026 0.0282 -0.0225 -0.0401
'X-RAY DIFFRACTION' 3 ? refined 10.5243 3.9040 7.2653 0.0451 0.0422 0.0532 -0.0091 -0.0003 0.0023 0.1655 0.1622 0.7250 -0.0804
0.1895 -0.0077 -0.0048 0.0471 -0.0066 -0.0354 -0.0146 0.0368 0.0704 -0.0479 0.0171
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ?
;chain 'A' and (resseq 62:96)
;
'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ?
;chain 'A' and (resseq 97:145)
;
'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ?
;chain 'A' and (resseq 146:224)
;
#
_software.name PHENIX
_software.classification refinement
_software.version '(phenix.refine: 1.4_162)'
_software.citation_id ?
_software.pdbx_ordinal 1
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 THR A 99 ? ? -124.71 -51.42
2 1 ASP A 100 ? ? -146.36 11.44
3 1 ASN A 194 ? ? -161.08 95.12
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A2G O5 O N N 1
A2G C1 C N S 2
A2G O1 O N N 3
A2G C2 C N R 4
A2G N2 N N N 5
A2G C3 C N R 6
A2G O3 O N N 7
A2G C4 C N R 8
A2G O4 O N N 9
A2G C5 C N R 10
A2G C6 C N N 11
A2G O6 O N N 12
A2G C7 C N N 13
A2G O7 O N N 14
A2G C8 C N N 15
A2G H1 H N N 16
A2G HO1 H N N 17
A2G H2 H N N 18
A2G HN2 H N N 19
A2G H3 H N N 20
A2G HO3 H N N 21
A2G H4 H N N 22
A2G HO4 H N N 23
A2G H5 H N N 24
A2G H61 H N N 25
A2G H81 H N N 26
A2G H82 H N N 27
A2G H83 H N N 28
A2G H62 H N N 29
A2G HO6 H N N 30
ALA N N N N 31
ALA CA C N S 32
ALA C C N N 33
ALA O O N N 34
ALA CB C N N 35
ALA OXT O N N 36
ALA H H N N 37
ALA H2 H N N 38
ALA HA H N N 39
ALA HB1 H N N 40
ALA HB2 H N N 41
ALA HB3 H N N 42
ALA HXT H N N 43
ARG N N N N 44
ARG CA C N S 45
ARG C C N N 46
ARG O O N N 47
ARG CB C N N 48
ARG CG C N N 49
ARG CD C N N 50
ARG NE N N N 51
ARG CZ C N N 52
ARG NH1 N N N 53
ARG NH2 N N N 54
ARG OXT O N N 55
ARG H H N N 56
ARG H2 H N N 57
ARG HA H N N 58
ARG HB2 H N N 59
ARG HB3 H N N 60
ARG HG2 H N N 61
ARG HG3 H N N 62
ARG HD2 H N N 63
ARG HD3 H N N 64
ARG HE H N N 65
ARG HH11 H N N 66
ARG HH12 H N N 67
ARG HH21 H N N 68
ARG HH22 H N N 69
ARG HXT H N N 70
ASN N N N N 71
ASN CA C N S 72
ASN C C N N 73
ASN O O N N 74
ASN CB C N N 75
ASN CG C N N 76
ASN OD1 O N N 77
ASN ND2 N N N 78
ASN OXT O N N 79
ASN H H N N 80
ASN H2 H N N 81
ASN HA H N N 82
ASN HB2 H N N 83
ASN HB3 H N N 84
ASN HD21 H N N 85
ASN HD22 H N N 86
ASN HXT H N N 87
ASP N N N N 88
ASP CA C N S 89
ASP C C N N 90
ASP O O N N 91
ASP CB C N N 92
ASP CG C N N 93
ASP OD1 O N N 94
ASP OD2 O N N 95
ASP OXT O N N 96
ASP H H N N 97
ASP H2 H N N 98
ASP HA H N N 99
ASP HB2 H N N 100
ASP HB3 H N N 101
ASP HD2 H N N 102
ASP HXT H N N 103
CYS N N N N 104
CYS CA C N R 105
CYS C C N N 106
CYS O O N N 107
CYS CB C N N 108
CYS SG S N N 109
CYS OXT O N N 110
CYS H H N N 111
CYS H2 H N N 112
CYS HA H N N 113
CYS HB2 H N N 114
CYS HB3 H N N 115
CYS HG H N N 116
CYS HXT H N N 117
FUC C1 C N R 118
FUC C2 C N S 119
FUC C3 C N R 120
FUC C4 C N S 121
FUC C5 C N S 122
FUC C6 C N N 123
FUC O1 O N N 124
FUC O2 O N N 125
FUC O3 O N N 126
FUC O4 O N N 127
FUC O5 O N N 128
FUC H1 H N N 129
FUC H2 H N N 130
FUC H3 H N N 131
FUC H4 H N N 132
FUC H5 H N N 133
FUC H61 H N N 134
FUC H62 H N N 135
FUC H63 H N N 136
FUC HO1 H N N 137
FUC HO2 H N N 138
FUC HO3 H N N 139
FUC HO4 H N N 140
GAL C1 C N R 141
GAL C2 C N R 142
GAL C3 C N S 143
GAL C4 C N R 144
GAL C5 C N R 145
GAL C6 C N N 146
GAL O1 O N N 147
GAL O2 O N N 148
GAL O3 O N N 149
GAL O4 O N N 150
GAL O5 O N N 151
GAL O6 O N N 152
GAL H1 H N N 153
GAL H2 H N N 154
GAL H3 H N N 155
GAL H4 H N N 156
GAL H5 H N N 157
GAL H61 H N N 158
GAL H62 H N N 159
GAL HO1 H N N 160
GAL HO2 H N N 161
GAL HO3 H N N 162
GAL HO4 H N N 163
GAL HO6 H N N 164
GLN N N N N 165
GLN CA C N S 166
GLN C C N N 167
GLN O O N N 168
GLN CB C N N 169
GLN CG C N N 170
GLN CD C N N 171
GLN OE1 O N N 172
GLN NE2 N N N 173
GLN OXT O N N 174
GLN H H N N 175
GLN H2 H N N 176
GLN HA H N N 177
GLN HB2 H N N 178
GLN HB3 H N N 179
GLN HG2 H N N 180
GLN HG3 H N N 181
GLN HE21 H N N 182
GLN HE22 H N N 183
GLN HXT H N N 184
GLU N N N N 185
GLU CA C N S 186
GLU C C N N 187
GLU O O N N 188
GLU CB C N N 189
GLU CG C N N 190
GLU CD C N N 191
GLU OE1 O N N 192
GLU OE2 O N N 193
GLU OXT O N N 194
GLU H H N N 195
GLU H2 H N N 196
GLU HA H N N 197
GLU HB2 H N N 198
GLU HB3 H N N 199
GLU HG2 H N N 200
GLU HG3 H N N 201
GLU HE2 H N N 202
GLU HXT H N N 203
GLY N N N N 204
GLY CA C N N 205
GLY C C N N 206
GLY O O N N 207
GLY OXT O N N 208
GLY H H N N 209
GLY H2 H N N 210
GLY HA2 H N N 211
GLY HA3 H N N 212
GLY HXT H N N 213
HOH O O N N 214
HOH H1 H N N 215
HOH H2 H N N 216
ILE N N N N 217
ILE CA C N S 218
ILE C C N N 219
ILE O O N N 220
ILE CB C N S 221
ILE CG1 C N N 222
ILE CG2 C N N 223
ILE CD1 C N N 224
ILE OXT O N N 225
ILE H H N N 226
ILE H2 H N N 227
ILE HA H N N 228
ILE HB H N N 229
ILE HG12 H N N 230
ILE HG13 H N N 231
ILE HG21 H N N 232
ILE HG22 H N N 233
ILE HG23 H N N 234
ILE HD11 H N N 235
ILE HD12 H N N 236
ILE HD13 H N N 237
ILE HXT H N N 238
LEU N N N N 239
LEU CA C N S 240
LEU C C N N 241
LEU O O N N 242
LEU CB C N N 243
LEU CG C N N 244
LEU CD1 C N N 245
LEU CD2 C N N 246
LEU OXT O N N 247
LEU H H N N 248
LEU H2 H N N 249
LEU HA H N N 250
LEU HB2 H N N 251
LEU HB3 H N N 252
LEU HG H N N 253
LEU HD11 H N N 254
LEU HD12 H N N 255
LEU HD13 H N N 256
LEU HD21 H N N 257
LEU HD22 H N N 258
LEU HD23 H N N 259
LEU HXT H N N 260
LYS N N N N 261
LYS CA C N S 262
LYS C C N N 263
LYS O O N N 264
LYS CB C N N 265
LYS CG C N N 266
LYS CD C N N 267
LYS CE C N N 268
LYS NZ N N N 269
LYS OXT O N N 270
LYS H H N N 271
LYS H2 H N N 272
LYS HA H N N 273
LYS HB2 H N N 274
LYS HB3 H N N 275
LYS HG2 H N N 276
LYS HG3 H N N 277
LYS HD2 H N N 278
LYS HD3 H N N 279
LYS HE2 H N N 280
LYS HE3 H N N 281
LYS HZ1 H N N 282
LYS HZ2 H N N 283
LYS HZ3 H N N 284
LYS HXT H N N 285
MET N N N N 286
MET CA C N S 287
MET C C N N 288
MET O O N N 289
MET CB C N N 290
MET CG C N N 291
MET SD S N N 292
MET CE C N N 293
MET OXT O N N 294
MET H H N N 295
MET H2 H N N 296
MET HA H N N 297
MET HB2 H N N 298
MET HB3 H N N 299
MET HG2 H N N 300
MET HG3 H N N 301
MET HE1 H N N 302
MET HE2 H N N 303
MET HE3 H N N 304
MET HXT H N N 305
NAG C1 C N R 306
NAG C2 C N R 307
NAG C3 C N R 308
NAG C4 C N S 309
NAG C5 C N R 310
NAG C6 C N N 311
NAG C7 C N N 312
NAG C8 C N N 313
NAG N2 N N N 314
NAG O1 O N N 315
NAG O3 O N N 316
NAG O4 O N N 317
NAG O5 O N N 318
NAG O6 O N N 319
NAG O7 O N N 320
NAG H1 H N N 321
NAG H2 H N N 322
NAG H3 H N N 323
NAG H4 H N N 324
NAG H5 H N N 325
NAG H61 H N N 326
NAG H62 H N N 327
NAG H81 H N N 328
NAG H82 H N N 329
NAG H83 H N N 330
NAG HN2 H N N 331
NAG HO1 H N N 332
NAG HO3 H N N 333
NAG HO4 H N N 334
NAG HO6 H N N 335
PHE N N N N 336
PHE CA C N S 337
PHE C C N N 338
PHE O O N N 339
PHE CB C N N 340
PHE CG C Y N 341
PHE CD1 C Y N 342
PHE CD2 C Y N 343
PHE CE1 C Y N 344
PHE CE2 C Y N 345
PHE CZ C Y N 346
PHE OXT O N N 347
PHE H H N N 348
PHE H2 H N N 349
PHE HA H N N 350
PHE HB2 H N N 351
PHE HB3 H N N 352
PHE HD1 H N N 353
PHE HD2 H N N 354
PHE HE1 H N N 355
PHE HE2 H N N 356
PHE HZ H N N 357
PHE HXT H N N 358
PRO N N N N 359
PRO CA C N S 360
PRO C C N N 361
PRO O O N N 362
PRO CB C N N 363
PRO CG C N N 364
PRO CD C N N 365
PRO OXT O N N 366
PRO H H N N 367
PRO HA H N N 368
PRO HB2 H N N 369
PRO HB3 H N N 370
PRO HG2 H N N 371
PRO HG3 H N N 372
PRO HD2 H N N 373
PRO HD3 H N N 374
PRO HXT H N N 375
SER N N N N 376
SER CA C N S 377
SER C C N N 378
SER O O N N 379
SER CB C N N 380
SER OG O N N 381
SER OXT O N N 382
SER H H N N 383
SER H2 H N N 384
SER HA H N N 385
SER HB2 H N N 386
SER HB3 H N N 387
SER HG H N N 388
SER HXT H N N 389
THR N N N N 390
THR CA C N S 391
THR C C N N 392
THR O O N N 393
THR CB C N R 394
THR OG1 O N N 395
THR CG2 C N N 396
THR OXT O N N 397
THR H H N N 398
THR H2 H N N 399
THR HA H N N 400
THR HB H N N 401
THR HG1 H N N 402
THR HG21 H N N 403
THR HG22 H N N 404
THR HG23 H N N 405
THR HXT H N N 406
TRP N N N N 407
TRP CA C N S 408
TRP C C N N 409
TRP O O N N 410
TRP CB C N N 411
TRP CG C Y N 412
TRP CD1 C Y N 413
TRP CD2 C Y N 414
TRP NE1 N Y N 415
TRP CE2 C Y N 416
TRP CE3 C Y N 417
TRP CZ2 C Y N 418
TRP CZ3 C Y N 419
TRP CH2 C Y N 420
TRP OXT O N N 421
TRP H H N N 422
TRP H2 H N N 423
TRP HA H N N 424
TRP HB2 H N N 425
TRP HB3 H N N 426
TRP HD1 H N N 427
TRP HE1 H N N 428
TRP HE3 H N N 429
TRP HZ2 H N N 430
TRP HZ3 H N N 431
TRP HH2 H N N 432
TRP HXT H N N 433
TYR N N N N 434
TYR CA C N S 435
TYR C C N N 436
TYR O O N N 437
TYR CB C N N 438
TYR CG C Y N 439
TYR CD1 C Y N 440
TYR CD2 C Y N 441
TYR CE1 C Y N 442
TYR CE2 C Y N 443
TYR CZ C Y N 444
TYR OH O N N 445
TYR OXT O N N 446
TYR H H N N 447
TYR H2 H N N 448
TYR HA H N N 449
TYR HB2 H N N 450
TYR HB3 H N N 451
TYR HD1 H N N 452
TYR HD2 H N N 453
TYR HE1 H N N 454
TYR HE2 H N N 455
TYR HH H N N 456
TYR HXT H N N 457
VAL N N N N 458
VAL CA C N S 459
VAL C C N N 460
VAL O O N N 461
VAL CB C N N 462
VAL CG1 C N N 463
VAL CG2 C N N 464
VAL OXT O N N 465
VAL H H N N 466
VAL H2 H N N 467
VAL HA H N N 468
VAL HB H N N 469
VAL HG11 H N N 470
VAL HG12 H N N 471
VAL HG13 H N N 472
VAL HG21 H N N 473
VAL HG22 H N N 474
VAL HG23 H N N 475
VAL HXT H N N 476
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2G O5 C5 sing N N 1
A2G C1 O5 sing N N 2
A2G C1 C2 sing N N 3
A2G C1 H1 sing N N 4
A2G O1 C1 sing N N 5
A2G O1 HO1 sing N N 6
A2G C2 C3 sing N N 7
A2G C2 H2 sing N N 8
A2G N2 C2 sing N N 9
A2G N2 HN2 sing N N 10
A2G C3 C4 sing N N 11
A2G C3 O3 sing N N 12
A2G C3 H3 sing N N 13
A2G O3 HO3 sing N N 14
A2G C4 O4 sing N N 15
A2G C4 H4 sing N N 16
A2G O4 HO4 sing N N 17
A2G C5 C4 sing N N 18
A2G C5 C6 sing N N 19
A2G C5 H5 sing N N 20
A2G C6 O6 sing N N 21
A2G C6 H61 sing N N 22
A2G C7 N2 sing N N 23
A2G O7 C7 doub N N 24
A2G C8 C7 sing N N 25
A2G C8 H81 sing N N 26
A2G C8 H82 sing N N 27
A2G C8 H83 sing N N 28
A2G C6 H62 sing N N 29
A2G O6 HO6 sing N N 30
ALA N CA sing N N 31
ALA N H sing N N 32
ALA N H2 sing N N 33
ALA CA C sing N N 34
ALA CA CB sing N N 35
ALA CA HA sing N N 36
ALA C O doub N N 37
ALA C OXT sing N N 38
ALA CB HB1 sing N N 39
ALA CB HB2 sing N N 40
ALA CB HB3 sing N N 41
ALA OXT HXT sing N N 42
ARG N CA sing N N 43
ARG N H sing N N 44
ARG N H2 sing N N 45
ARG CA C sing N N 46
ARG CA CB sing N N 47
ARG CA HA sing N N 48
ARG C O doub N N 49
ARG C OXT sing N N 50
ARG CB CG sing N N 51
ARG CB HB2 sing N N 52
ARG CB HB3 sing N N 53
ARG CG CD sing N N 54
ARG CG HG2 sing N N 55
ARG CG HG3 sing N N 56
ARG CD NE sing N N 57
ARG CD HD2 sing N N 58
ARG CD HD3 sing N N 59
ARG NE CZ sing N N 60
ARG NE HE sing N N 61
ARG CZ NH1 sing N N 62
ARG CZ NH2 doub N N 63
ARG NH1 HH11 sing N N 64
ARG NH1 HH12 sing N N 65
ARG NH2 HH21 sing N N 66
ARG NH2 HH22 sing N N 67
ARG OXT HXT sing N N 68
ASN N CA sing N N 69
ASN N H sing N N 70
ASN N H2 sing N N 71
ASN CA C sing N N 72
ASN CA CB sing N N 73
ASN CA HA sing N N 74
ASN C O doub N N 75
ASN C OXT sing N N 76
ASN CB CG sing N N 77
ASN CB HB2 sing N N 78
ASN CB HB3 sing N N 79
ASN CG OD1 doub N N 80
ASN CG ND2 sing N N 81
ASN ND2 HD21 sing N N 82
ASN ND2 HD22 sing N N 83
ASN OXT HXT sing N N 84
ASP N CA sing N N 85
ASP N H sing N N 86
ASP N H2 sing N N 87
ASP CA C sing N N 88
ASP CA CB sing N N 89
ASP CA HA sing N N 90
ASP C O doub N N 91
ASP C OXT sing N N 92
ASP CB CG sing N N 93
ASP CB HB2 sing N N 94
ASP CB HB3 sing N N 95
ASP CG OD1 doub N N 96
ASP CG OD2 sing N N 97
ASP OD2 HD2 sing N N 98
ASP OXT HXT sing N N 99
CYS N CA sing N N 100
CYS N H sing N N 101
CYS N H2 sing N N 102
CYS CA C sing N N 103
CYS CA CB sing N N 104
CYS CA HA sing N N 105
CYS C O doub N N 106
CYS C OXT sing N N 107
CYS CB SG sing N N 108
CYS CB HB2 sing N N 109
CYS CB HB3 sing N N 110
CYS SG HG sing N N 111
CYS OXT HXT sing N N 112
FUC C1 C2 sing N N 113
FUC C1 O1 sing N N 114
FUC C1 O5 sing N N 115
FUC C1 H1 sing N N 116
FUC C2 C3 sing N N 117
FUC C2 O2 sing N N 118
FUC C2 H2 sing N N 119
FUC C3 C4 sing N N 120
FUC C3 O3 sing N N 121
FUC C3 H3 sing N N 122
FUC C4 C5 sing N N 123
FUC C4 O4 sing N N 124
FUC C4 H4 sing N N 125
FUC C5 C6 sing N N 126
FUC C5 O5 sing N N 127
FUC C5 H5 sing N N 128
FUC C6 H61 sing N N 129
FUC C6 H62 sing N N 130
FUC C6 H63 sing N N 131
FUC O1 HO1 sing N N 132
FUC O2 HO2 sing N N 133
FUC O3 HO3 sing N N 134
FUC O4 HO4 sing N N 135
GAL C1 C2 sing N N 136
GAL C1 O1 sing N N 137
GAL C1 O5 sing N N 138
GAL C1 H1 sing N N 139
GAL C2 C3 sing N N 140
GAL C2 O2 sing N N 141
GAL C2 H2 sing N N 142
GAL C3 C4 sing N N 143
GAL C3 O3 sing N N 144
GAL C3 H3 sing N N 145
GAL C4 C5 sing N N 146
GAL C4 O4 sing N N 147
GAL C4 H4 sing N N 148
GAL C5 C6 sing N N 149
GAL C5 O5 sing N N 150
GAL C5 H5 sing N N 151
GAL C6 O6 sing N N 152
GAL C6 H61 sing N N 153
GAL C6 H62 sing N N 154
GAL O1 HO1 sing N N 155
GAL O2 HO2 sing N N 156
GAL O3 HO3 sing N N 157
GAL O4 HO4 sing N N 158
GAL O6 HO6 sing N N 159
GLN N CA sing N N 160
GLN N H sing N N 161
GLN N H2 sing N N 162
GLN CA C sing N N 163
GLN CA CB sing N N 164
GLN CA HA sing N N 165
GLN C O doub N N 166
GLN C OXT sing N N 167
GLN CB CG sing N N 168
GLN CB HB2 sing N N 169
GLN CB HB3 sing N N 170
GLN CG CD sing N N 171
GLN CG HG2 sing N N 172
GLN CG HG3 sing N N 173
GLN CD OE1 doub N N 174
GLN CD NE2 sing N N 175
GLN NE2 HE21 sing N N 176
GLN NE2 HE22 sing N N 177
GLN OXT HXT sing N N 178
GLU N CA sing N N 179
GLU N H sing N N 180
GLU N H2 sing N N 181
GLU CA C sing N N 182
GLU CA CB sing N N 183
GLU CA HA sing N N 184
GLU C O doub N N 185
GLU C OXT sing N N 186
GLU CB CG sing N N 187
GLU CB HB2 sing N N 188
GLU CB HB3 sing N N 189
GLU CG CD sing N N 190
GLU CG HG2 sing N N 191
GLU CG HG3 sing N N 192
GLU CD OE1 doub N N 193
GLU CD OE2 sing N N 194
GLU OE2 HE2 sing N N 195
GLU OXT HXT sing N N 196
GLY N CA sing N N 197
GLY N H sing N N 198
GLY N H2 sing N N 199
GLY CA C sing N N 200
GLY CA HA2 sing N N 201
GLY CA HA3 sing N N 202
GLY C O doub N N 203
GLY C OXT sing N N 204
GLY OXT HXT sing N N 205
HOH O H1 sing N N 206
HOH O H2 sing N N 207
ILE N CA sing N N 208
ILE N H sing N N 209
ILE N H2 sing N N 210
ILE CA C sing N N 211
ILE CA CB sing N N 212
ILE CA HA sing N N 213
ILE C O doub N N 214
ILE C OXT sing N N 215
ILE CB CG1 sing N N 216
ILE CB CG2 sing N N 217
ILE CB HB sing N N 218
ILE CG1 CD1 sing N N 219
ILE CG1 HG12 sing N N 220
ILE CG1 HG13 sing N N 221
ILE CG2 HG21 sing N N 222
ILE CG2 HG22 sing N N 223
ILE CG2 HG23 sing N N 224
ILE CD1 HD11 sing N N 225
ILE CD1 HD12 sing N N 226
ILE CD1 HD13 sing N N 227
ILE OXT HXT sing N N 228
LEU N CA sing N N 229
LEU N H sing N N 230
LEU N H2 sing N N 231
LEU CA C sing N N 232
LEU CA CB sing N N 233
LEU CA HA sing N N 234
LEU C O doub N N 235
LEU C OXT sing N N 236
LEU CB CG sing N N 237
LEU CB HB2 sing N N 238
LEU CB HB3 sing N N 239
LEU CG CD1 sing N N 240
LEU CG CD2 sing N N 241
LEU CG HG sing N N 242
LEU CD1 HD11 sing N N 243
LEU CD1 HD12 sing N N 244
LEU CD1 HD13 sing N N 245
LEU CD2 HD21 sing N N 246
LEU CD2 HD22 sing N N 247
LEU CD2 HD23 sing N N 248
LEU OXT HXT sing N N 249
LYS N CA sing N N 250
LYS N H sing N N 251
LYS N H2 sing N N 252
LYS CA C sing N N 253
LYS CA CB sing N N 254
LYS CA HA sing N N 255
LYS C O doub N N 256
LYS C OXT sing N N 257
LYS CB CG sing N N 258
LYS CB HB2 sing N N 259
LYS CB HB3 sing N N 260
LYS CG CD sing N N 261
LYS CG HG2 sing N N 262
LYS CG HG3 sing N N 263
LYS CD CE sing N N 264
LYS CD HD2 sing N N 265
LYS CD HD3 sing N N 266
LYS CE NZ sing N N 267
LYS CE HE2 sing N N 268
LYS CE HE3 sing N N 269
LYS NZ HZ1 sing N N 270
LYS NZ HZ2 sing N N 271
LYS NZ HZ3 sing N N 272
LYS OXT HXT sing N N 273
MET N CA sing N N 274
MET N H sing N N 275
MET N H2 sing N N 276
MET CA C sing N N 277
MET CA CB sing N N 278
MET CA HA sing N N 279
MET C O doub N N 280
MET C OXT sing N N 281
MET CB CG sing N N 282
MET CB HB2 sing N N 283
MET CB HB3 sing N N 284
MET CG SD sing N N 285
MET CG HG2 sing N N 286
MET CG HG3 sing N N 287
MET SD CE sing N N 288
MET CE HE1 sing N N 289
MET CE HE2 sing N N 290
MET CE HE3 sing N N 291
MET OXT HXT sing N N 292
NAG C1 C2 sing N N 293
NAG C1 O1 sing N N 294
NAG C1 O5 sing N N 295
NAG C1 H1 sing N N 296
NAG C2 C3 sing N N 297
NAG C2 N2 sing N N 298
NAG C2 H2 sing N N 299
NAG C3 C4 sing N N 300
NAG C3 O3 sing N N 301
NAG C3 H3 sing N N 302
NAG C4 C5 sing N N 303
NAG C4 O4 sing N N 304
NAG C4 H4 sing N N 305
NAG C5 C6 sing N N 306
NAG C5 O5 sing N N 307
NAG C5 H5 sing N N 308
NAG C6 O6 sing N N 309
NAG C6 H61 sing N N 310
NAG C6 H62 sing N N 311
NAG C7 C8 sing N N 312
NAG C7 N2 sing N N 313
NAG C7 O7 doub N N 314
NAG C8 H81 sing N N 315
NAG C8 H82 sing N N 316
NAG C8 H83 sing N N 317
NAG N2 HN2 sing N N 318
NAG O1 HO1 sing N N 319
NAG O3 HO3 sing N N 320
NAG O4 HO4 sing N N 321
NAG O6 HO6 sing N N 322
PHE N CA sing N N 323
PHE N H sing N N 324
PHE N H2 sing N N 325
PHE CA C sing N N 326
PHE CA CB sing N N 327
PHE CA HA sing N N 328
PHE C O doub N N 329
PHE C OXT sing N N 330
PHE CB CG sing N N 331
PHE CB HB2 sing N N 332
PHE CB HB3 sing N N 333
PHE CG CD1 doub Y N 334
PHE CG CD2 sing Y N 335
PHE CD1 CE1 sing Y N 336
PHE CD1 HD1 sing N N 337
PHE CD2 CE2 doub Y N 338
PHE CD2 HD2 sing N N 339
PHE CE1 CZ doub Y N 340
PHE CE1 HE1 sing N N 341
PHE CE2 CZ sing Y N 342
PHE CE2 HE2 sing N N 343
PHE CZ HZ sing N N 344
PHE OXT HXT sing N N 345
PRO N CA sing N N 346
PRO N CD sing N N 347
PRO N H sing N N 348
PRO CA C sing N N 349
PRO CA CB sing N N 350
PRO CA HA sing N N 351
PRO C O doub N N 352
PRO C OXT sing N N 353
PRO CB CG sing N N 354
PRO CB HB2 sing N N 355
PRO CB HB3 sing N N 356
PRO CG CD sing N N 357
PRO CG HG2 sing N N 358
PRO CG HG3 sing N N 359
PRO CD HD2 sing N N 360
PRO CD HD3 sing N N 361
PRO OXT HXT sing N N 362
SER N CA sing N N 363
SER N H sing N N 364
SER N H2 sing N N 365
SER CA C sing N N 366
SER CA CB sing N N 367
SER CA HA sing N N 368
SER C O doub N N 369
SER C OXT sing N N 370
SER CB OG sing N N 371
SER CB HB2 sing N N 372
SER CB HB3 sing N N 373
SER OG HG sing N N 374
SER OXT HXT sing N N 375
THR N CA sing N N 376
THR N H sing N N 377
THR N H2 sing N N 378
THR CA C sing N N 379
THR CA CB sing N N 380
THR CA HA sing N N 381
THR C O doub N N 382
THR C OXT sing N N 383
THR CB OG1 sing N N 384
THR CB CG2 sing N N 385
THR CB HB sing N N 386
THR OG1 HG1 sing N N 387
THR CG2 HG21 sing N N 388
THR CG2 HG22 sing N N 389
THR CG2 HG23 sing N N 390
THR OXT HXT sing N N 391
TRP N CA sing N N 392
TRP N H sing N N 393
TRP N H2 sing N N 394
TRP CA C sing N N 395
TRP CA CB sing N N 396
TRP CA HA sing N N 397
TRP C O doub N N 398
TRP C OXT sing N N 399
TRP CB CG sing N N 400
TRP CB HB2 sing N N 401
TRP CB HB3 sing N N 402
TRP CG CD1 doub Y N 403
TRP CG CD2 sing Y N 404
TRP CD1 NE1 sing Y N 405
TRP CD1 HD1 sing N N 406
TRP CD2 CE2 doub Y N 407
TRP CD2 CE3 sing Y N 408
TRP NE1 CE2 sing Y N 409
TRP NE1 HE1 sing N N 410
TRP CE2 CZ2 sing Y N 411
TRP CE3 CZ3 doub Y N 412
TRP CE3 HE3 sing N N 413
TRP CZ2 CH2 doub Y N 414
TRP CZ2 HZ2 sing N N 415
TRP CZ3 CH2 sing Y N 416
TRP CZ3 HZ3 sing N N 417
TRP CH2 HH2 sing N N 418
TRP OXT HXT sing N N 419
TYR N CA sing N N 420
TYR N H sing N N 421
TYR N H2 sing N N 422
TYR CA C sing N N 423
TYR CA CB sing N N 424
TYR CA HA sing N N 425
TYR C O doub N N 426
TYR C OXT sing N N 427
TYR CB CG sing N N 428
TYR CB HB2 sing N N 429
TYR CB HB3 sing N N 430
TYR CG CD1 doub Y N 431
TYR CG CD2 sing Y N 432
TYR CD1 CE1 sing Y N 433
TYR CD1 HD1 sing N N 434
TYR CD2 CE2 doub Y N 435
TYR CD2 HD2 sing N N 436
TYR CE1 CZ doub Y N 437
TYR CE1 HE1 sing N N 438
TYR CE2 CZ sing Y N 439
TYR CE2 HE2 sing N N 440
TYR CZ OH sing N N 441
TYR OH HH sing N N 442
TYR OXT HXT sing N N 443
VAL N CA sing N N 444
VAL N H sing N N 445
VAL N H2 sing N N 446
VAL CA C sing N N 447
VAL CA CB sing N N 448
VAL CA HA sing N N 449
VAL C O doub N N 450
VAL C OXT sing N N 451
VAL CB CG1 sing N N 452
VAL CB CG2 sing N N 453
VAL CB HB sing N N 454
VAL CG1 HG11 sing N N 455
VAL CG1 HG12 sing N N 456
VAL CG1 HG13 sing N N 457
VAL CG2 HG21 sing N N 458
VAL CG2 HG22 sing N N 459
VAL CG2 HG23 sing N N 460
VAL OXT HXT sing N N 461
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 B NAG 1 n
B 2 GAL 2 B GAL 2 B GAL 1 n
B 2 FUC 3 B FUC 3 B FUC 1 n
B 2 A2G 4 B A2G 4 B A2G 1 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca
A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine
A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc
A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa
FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose
FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp
FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'LFucpa1-2[DGalpNAca1-3]DGalpb1-4DGlcpNAcb1-ROH'
'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b2-c1_b3-d1'
WURCS PDB2Glycan 1.1.0
3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}[(3+1)][a-D-GalpNAc]{}}}'
LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 GAL C1 O1 1 NAG O4 HO4 sing ?
2 2 3 FUC C1 O1 2 GAL O2 HO2 sing ?
3 2 4 A2G C1 O1 2 GAL O3 HO3 sing ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 GAL 2 n
2 FUC 3 n
2 A2G 4 n
#
_pdbx_entity_nonpoly.entity_id 3
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1KQR
_pdbx_initial_refinement_model.details ?
#