data_4DS0 # _entry.id 4DS0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DS0 pdb_00004ds0 10.2210/pdb4ds0/pdb RCSB RCSB070708 ? ? WWPDB D_1000070708 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DRR 'Cell attachment protein VP8* of a human rotavirus' unspecified PDB 4DRV 'Cell attachment protein VP8* of a human rotavirus bound to A-type histo-blood group antigen trisaccharide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4DS0 _pdbx_database_status.recvd_initial_deposition_date 2012-02-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hu, L.' 1 'Crawford, S.E.' 2 'Czako, R.' 3 'Cortes-Penfield, N.W.' 4 'Smith, D.F.' 5 'Le Pendu, J.' 6 'Estes, M.K.' 7 'Prasad, B.V.V.' 8 # _citation.id primary _citation.title 'Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen.' _citation.journal_abbrev Nature _citation.journal_volume 485 _citation.page_first 256 _citation.page_last 259 _citation.year 2012 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22504179 _citation.pdbx_database_id_DOI 10.1038/nature10996 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, L.' 1 ? primary 'Crawford, S.E.' 2 ? primary 'Czako, R.' 3 ? primary 'Cortes-Penfield, N.W.' 4 ? primary 'Smith, D.F.' 5 ? primary 'Le Pendu, J.' 6 ? primary 'Estes, M.K.' 7 ? primary 'Prasad, B.V.' 8 ? # _cell.entry_id 4DS0 _cell.length_a 43.750 _cell.length_b 35.540 _cell.length_c 44.060 _cell.angle_alpha 90.00 _cell.angle_beta 94.85 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DS0 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer capsid protein VP4' 18567.623 1 ? ? 'UNP residues 64-224' ? 2 branched man ;alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 732.682 1 ? ? ? ? 3 water nat water 18.015 273 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotavirus cell attachment protein VP8*' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSTLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFI LFIKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYIN NGL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSTLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFI LFIKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYIN NGL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 LEU n 1 5 ASP n 1 6 GLY n 1 7 PRO n 1 8 TYR n 1 9 GLN n 1 10 PRO n 1 11 THR n 1 12 THR n 1 13 PHE n 1 14 ASN n 1 15 LEU n 1 16 PRO n 1 17 ILE n 1 18 ASP n 1 19 TYR n 1 20 TRP n 1 21 MET n 1 22 LEU n 1 23 ILE n 1 24 ALA n 1 25 PRO n 1 26 THR n 1 27 GLN n 1 28 ILE n 1 29 GLY n 1 30 ARG n 1 31 VAL n 1 32 ALA n 1 33 GLU n 1 34 GLY n 1 35 THR n 1 36 ASN n 1 37 THR n 1 38 THR n 1 39 ASP n 1 40 ARG n 1 41 TRP n 1 42 PHE n 1 43 ALA n 1 44 CYS n 1 45 VAL n 1 46 LEU n 1 47 VAL n 1 48 GLU n 1 49 PRO n 1 50 ASN n 1 51 VAL n 1 52 GLN n 1 53 ASN n 1 54 THR n 1 55 GLN n 1 56 ARG n 1 57 GLU n 1 58 TYR n 1 59 VAL n 1 60 LEU n 1 61 ASP n 1 62 GLY n 1 63 GLN n 1 64 THR n 1 65 VAL n 1 66 GLN n 1 67 LEU n 1 68 GLN n 1 69 VAL n 1 70 SER n 1 71 ASN n 1 72 ASN n 1 73 SER n 1 74 SER n 1 75 THR n 1 76 LEU n 1 77 TRP n 1 78 LYS n 1 79 PHE n 1 80 ILE n 1 81 LEU n 1 82 PHE n 1 83 ILE n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 LYS n 1 88 ASN n 1 89 GLY n 1 90 ALA n 1 91 TYR n 1 92 SER n 1 93 GLN n 1 94 TYR n 1 95 SER n 1 96 THR n 1 97 LEU n 1 98 SER n 1 99 THR n 1 100 SER n 1 101 ASN n 1 102 LYS n 1 103 LEU n 1 104 CYS n 1 105 ALA n 1 106 TRP n 1 107 MET n 1 108 LYS n 1 109 ARG n 1 110 GLU n 1 111 GLY n 1 112 ARG n 1 113 VAL n 1 114 TYR n 1 115 TRP n 1 116 TYR n 1 117 ALA n 1 118 GLY n 1 119 THR n 1 120 THR n 1 121 PRO n 1 122 ASN n 1 123 ALA n 1 124 SER n 1 125 GLU n 1 126 SER n 1 127 TYR n 1 128 TYR n 1 129 LEU n 1 130 THR n 1 131 ILE n 1 132 ASN n 1 133 ASN n 1 134 ASP n 1 135 ASN n 1 136 SER n 1 137 ASN n 1 138 VAL n 1 139 SER n 1 140 CYS n 1 141 ASP n 1 142 ALA n 1 143 GLU n 1 144 PHE n 1 145 TYR n 1 146 LEU n 1 147 ILE n 1 148 PRO n 1 149 ARG n 1 150 SER n 1 151 GLN n 1 152 THR n 1 153 GLU n 1 154 LEU n 1 155 CYS n 1 156 THR n 1 157 GLN n 1 158 TYR n 1 159 ILE n 1 160 ASN n 1 161 ASN n 1 162 GLY n 1 163 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VP4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rotavirus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10970 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q86169_9REOV _struct_ref.pdbx_db_accession Q86169 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLDGPYQPTTFNLPIDYWMLIAPTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYVLDGQTVQLQVSNNSSTLWKFILF IKLEKNGAYSQYSTLSTSNKLCAWMKREGRVYWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQYINNG L ; _struct_ref.pdbx_align_begin 64 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4DS0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86169 _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 224 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DS0 GLY A 1 ? UNP Q86169 ? ? 'expression tag' 62 1 1 4DS0 SER A 2 ? UNP Q86169 ? ? 'expression tag' 63 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4DS0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_percent_sol 33.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details ;30% PEG 1500 Sodium acetate trihydrate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS HTC' _diffrn_detector.pdbx_collection_date 2010-11-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 4DS0 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 27.6 _reflns.d_resolution_high 1.56 _reflns.number_obs 19647 _reflns.number_all 19647 _reflns.percent_possible_obs 92.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 86.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4DS0 _refine.ls_number_reflns_obs 18211 _refine.ls_number_reflns_all 18211 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.6 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 92.71 _refine.ls_R_factor_obs 0.1577 _refine.ls_R_factor_all 0.1577 _refine.ls_R_factor_R_work 0.1561 _refine.ls_R_factor_R_free 0.1873 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.16 _refine.ls_number_reflns_R_free 939 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -1.4105 _refine.aniso_B[2][2] 2.3800 _refine.aniso_B[3][3] -0.9696 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.5005 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.336 _refine.solvent_model_param_bsol 26.669 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1KQR _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 17.64 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1307 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 273 _refine_hist.number_atoms_total 1630 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 27.6 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1392 ? 'X-RAY DIFFRACTION' f_angle_d 1.074 ? ? 1908 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 30.201 ? ? 544 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.068 ? ? 223 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 237 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.56 1.6370 2298 0.1692 87.00 0.2094 . . 114 . . . . 'X-RAY DIFFRACTION' . 1.6370 1.7395 2368 0.1550 90.00 0.2325 . . 111 . . . . 'X-RAY DIFFRACTION' . 1.7395 1.8738 2431 0.1558 91.00 0.2084 . . 124 . . . . 'X-RAY DIFFRACTION' . 1.8738 2.0623 2438 0.1448 93.00 0.1689 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.0623 2.3606 2517 0.1433 94.00 0.1773 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.3606 2.9736 2552 0.1514 96.00 0.1996 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.9736 27.6276 2668 0.1322 98.00 0.1556 . . 151 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4DS0 _struct.title 'Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4DS0 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'OTAVIRUS, VIRAL PROTEIN, CELL ATTACHMENT FACTOR, HISTO BLOOD GROUP ANTIGEN, GALECTIN-FOLD' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 151 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 162 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 212 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 223 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.400 sing ? covale2 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 2 B FUC 3 1_555 ? ? ? ? ? ? ? 1.381 ? ? covale3 covale both ? B GAL . O3 ? ? ? 1_555 B A2G . C1 ? ? B GAL 2 B A2G 4 1_555 ? ? ? ? ? ? ? 1.403 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 6 A . ? GLY 67 A PRO 7 A ? PRO 68 A 1 3.70 2 THR 120 A . ? THR 181 A PRO 121 A ? PRO 182 A 1 5.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 11 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 5 ? TYR A 8 ? ASP A 66 TYR A 69 A 2 PHE A 144 ? PRO A 148 ? PHE A 205 PRO A 209 A 3 TYR A 19 ? ILE A 23 ? TYR A 80 ILE A 84 A 4 CYS A 104 ? ARG A 109 ? CYS A 165 ARG A 170 A 5 ARG A 112 ? THR A 119 ? ARG A 173 THR A 180 A 6 SER A 92 ? THR A 99 ? SER A 153 THR A 160 A 7 TRP A 77 ? LYS A 84 ? TRP A 138 LYS A 145 A 8 TRP A 41 ? VAL A 47 ? TRP A 102 VAL A 108 A 9 GLY A 29 ? THR A 35 ? GLY A 90 THR A 96 A 10 ASN A 137 ? CYS A 140 ? ASN A 198 CYS A 201 A 11 THR A 12 ? PHE A 13 ? THR A 73 PHE A 74 B 1 ASP A 5 ? TYR A 8 ? ASP A 66 TYR A 69 B 2 PHE A 144 ? PRO A 148 ? PHE A 205 PRO A 209 B 3 TYR A 19 ? ILE A 23 ? TYR A 80 ILE A 84 B 4 CYS A 104 ? ARG A 109 ? CYS A 165 ARG A 170 B 5 ARG A 112 ? THR A 119 ? ARG A 173 THR A 180 B 6 SER A 124 ? THR A 130 ? SER A 185 THR A 191 C 1 VAL A 51 ? LEU A 60 ? VAL A 112 LEU A 121 C 2 GLN A 63 ? ASN A 71 ? GLN A 124 ASN A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 8 ? N TYR A 69 O PHE A 144 ? O PHE A 205 A 2 3 O ILE A 147 ? O ILE A 208 N TRP A 20 ? N TRP A 81 A 3 4 N MET A 21 ? N MET A 82 O TRP A 106 ? O TRP A 167 A 4 5 N MET A 107 ? N MET A 168 O TYR A 114 ? O TYR A 175 A 5 6 O GLY A 118 ? O GLY A 179 N SER A 98 ? N SER A 159 A 6 7 O LEU A 97 ? O LEU A 158 N PHE A 79 ? N PHE A 140 A 7 8 O PHE A 82 ? O PHE A 143 N ALA A 43 ? N ALA A 104 A 8 9 O LEU A 46 ? O LEU A 107 N GLY A 29 ? N GLY A 90 A 9 10 N GLU A 33 ? N GLU A 94 O SER A 139 ? O SER A 200 A 10 11 O VAL A 138 ? O VAL A 199 N PHE A 13 ? N PHE A 74 B 1 2 N TYR A 8 ? N TYR A 69 O PHE A 144 ? O PHE A 205 B 2 3 O ILE A 147 ? O ILE A 208 N TRP A 20 ? N TRP A 81 B 3 4 N MET A 21 ? N MET A 82 O TRP A 106 ? O TRP A 167 B 4 5 N MET A 107 ? N MET A 168 O TYR A 114 ? O TYR A 175 B 5 6 N ALA A 117 ? N ALA A 178 O SER A 124 ? O SER A 185 C 1 2 N TYR A 58 ? N TYR A 119 O VAL A 65 ? O VAL A 126 # _database_PDB_matrix.entry_id 4DS0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4DS0 _atom_sites.fract_transf_matrix[1][1] 0.022857 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001939 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022778 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 62 62 GLY GLY A . n A 1 2 SER 2 63 63 SER SER A . n A 1 3 THR 3 64 64 THR THR A . n A 1 4 LEU 4 65 65 LEU LEU A . n A 1 5 ASP 5 66 66 ASP ASP A . n A 1 6 GLY 6 67 67 GLY GLY A . n A 1 7 PRO 7 68 68 PRO PRO A . n A 1 8 TYR 8 69 69 TYR TYR A . n A 1 9 GLN 9 70 70 GLN GLN A . n A 1 10 PRO 10 71 71 PRO PRO A . n A 1 11 THR 11 72 72 THR THR A . n A 1 12 THR 12 73 73 THR THR A . n A 1 13 PHE 13 74 74 PHE PHE A . n A 1 14 ASN 14 75 75 ASN ASN A . n A 1 15 LEU 15 76 76 LEU LEU A . n A 1 16 PRO 16 77 77 PRO PRO A . n A 1 17 ILE 17 78 78 ILE ILE A . n A 1 18 ASP 18 79 79 ASP ASP A . n A 1 19 TYR 19 80 80 TYR TYR A . n A 1 20 TRP 20 81 81 TRP TRP A . n A 1 21 MET 21 82 82 MET MET A . n A 1 22 LEU 22 83 83 LEU LEU A . n A 1 23 ILE 23 84 84 ILE ILE A . n A 1 24 ALA 24 85 85 ALA ALA A . n A 1 25 PRO 25 86 86 PRO PRO A . n A 1 26 THR 26 87 87 THR THR A . n A 1 27 GLN 27 88 88 GLN GLN A . n A 1 28 ILE 28 89 89 ILE ILE A . n A 1 29 GLY 29 90 90 GLY GLY A . n A 1 30 ARG 30 91 91 ARG ARG A . n A 1 31 VAL 31 92 92 VAL VAL A . n A 1 32 ALA 32 93 93 ALA ALA A . n A 1 33 GLU 33 94 94 GLU GLU A . n A 1 34 GLY 34 95 95 GLY GLY A . n A 1 35 THR 35 96 96 THR THR A . n A 1 36 ASN 36 97 97 ASN ASN A . n A 1 37 THR 37 98 98 THR THR A . n A 1 38 THR 38 99 99 THR THR A . n A 1 39 ASP 39 100 100 ASP ASP A . n A 1 40 ARG 40 101 101 ARG ARG A . n A 1 41 TRP 41 102 102 TRP TRP A . n A 1 42 PHE 42 103 103 PHE PHE A . n A 1 43 ALA 43 104 104 ALA ALA A . n A 1 44 CYS 44 105 105 CYS CYS A . n A 1 45 VAL 45 106 106 VAL VAL A . n A 1 46 LEU 46 107 107 LEU LEU A . n A 1 47 VAL 47 108 108 VAL VAL A . n A 1 48 GLU 48 109 109 GLU GLU A . n A 1 49 PRO 49 110 110 PRO PRO A . n A 1 50 ASN 50 111 111 ASN ASN A . n A 1 51 VAL 51 112 112 VAL VAL A . n A 1 52 GLN 52 113 113 GLN GLN A . n A 1 53 ASN 53 114 114 ASN ASN A . n A 1 54 THR 54 115 115 THR THR A . n A 1 55 GLN 55 116 116 GLN GLN A . n A 1 56 ARG 56 117 117 ARG ARG A . n A 1 57 GLU 57 118 118 GLU GLU A . n A 1 58 TYR 58 119 119 TYR TYR A . n A 1 59 VAL 59 120 120 VAL VAL A . n A 1 60 LEU 60 121 121 LEU LEU A . n A 1 61 ASP 61 122 122 ASP ASP A . n A 1 62 GLY 62 123 123 GLY GLY A . n A 1 63 GLN 63 124 124 GLN GLN A . n A 1 64 THR 64 125 125 THR THR A . n A 1 65 VAL 65 126 126 VAL VAL A . n A 1 66 GLN 66 127 127 GLN GLN A . n A 1 67 LEU 67 128 128 LEU LEU A . n A 1 68 GLN 68 129 129 GLN GLN A . n A 1 69 VAL 69 130 130 VAL VAL A . n A 1 70 SER 70 131 131 SER SER A . n A 1 71 ASN 71 132 132 ASN ASN A . n A 1 72 ASN 72 133 133 ASN ASN A . n A 1 73 SER 73 134 134 SER SER A . n A 1 74 SER 74 135 135 SER SER A . n A 1 75 THR 75 136 136 THR THR A . n A 1 76 LEU 76 137 137 LEU LEU A . n A 1 77 TRP 77 138 138 TRP TRP A . n A 1 78 LYS 78 139 139 LYS LYS A . n A 1 79 PHE 79 140 140 PHE PHE A . n A 1 80 ILE 80 141 141 ILE ILE A . n A 1 81 LEU 81 142 142 LEU LEU A . n A 1 82 PHE 82 143 143 PHE PHE A . n A 1 83 ILE 83 144 144 ILE ILE A . n A 1 84 LYS 84 145 145 LYS LYS A . n A 1 85 LEU 85 146 146 LEU LEU A . n A 1 86 GLU 86 147 147 GLU GLU A . n A 1 87 LYS 87 148 148 LYS LYS A . n A 1 88 ASN 88 149 149 ASN ASN A . n A 1 89 GLY 89 150 150 GLY GLY A . n A 1 90 ALA 90 151 151 ALA ALA A . n A 1 91 TYR 91 152 152 TYR TYR A . n A 1 92 SER 92 153 153 SER SER A . n A 1 93 GLN 93 154 154 GLN GLN A . n A 1 94 TYR 94 155 155 TYR TYR A . n A 1 95 SER 95 156 156 SER SER A . n A 1 96 THR 96 157 157 THR THR A . n A 1 97 LEU 97 158 158 LEU LEU A . n A 1 98 SER 98 159 159 SER SER A . n A 1 99 THR 99 160 160 THR THR A . n A 1 100 SER 100 161 161 SER SER A . n A 1 101 ASN 101 162 162 ASN ASN A . n A 1 102 LYS 102 163 163 LYS LYS A . n A 1 103 LEU 103 164 164 LEU LEU A . n A 1 104 CYS 104 165 165 CYS CYS A . n A 1 105 ALA 105 166 166 ALA ALA A . n A 1 106 TRP 106 167 167 TRP TRP A . n A 1 107 MET 107 168 168 MET MET A . n A 1 108 LYS 108 169 169 LYS LYS A . n A 1 109 ARG 109 170 170 ARG ARG A . n A 1 110 GLU 110 171 171 GLU GLU A . n A 1 111 GLY 111 172 172 GLY GLY A . n A 1 112 ARG 112 173 173 ARG ARG A . n A 1 113 VAL 113 174 174 VAL VAL A . n A 1 114 TYR 114 175 175 TYR TYR A . n A 1 115 TRP 115 176 176 TRP TRP A . n A 1 116 TYR 116 177 177 TYR TYR A . n A 1 117 ALA 117 178 178 ALA ALA A . n A 1 118 GLY 118 179 179 GLY GLY A . n A 1 119 THR 119 180 180 THR THR A . n A 1 120 THR 120 181 181 THR THR A . n A 1 121 PRO 121 182 182 PRO PRO A . n A 1 122 ASN 122 183 183 ASN ASN A . n A 1 123 ALA 123 184 184 ALA ALA A . n A 1 124 SER 124 185 185 SER SER A . n A 1 125 GLU 125 186 186 GLU GLU A . n A 1 126 SER 126 187 187 SER SER A . n A 1 127 TYR 127 188 188 TYR TYR A . n A 1 128 TYR 128 189 189 TYR TYR A . n A 1 129 LEU 129 190 190 LEU LEU A . n A 1 130 THR 130 191 191 THR THR A . n A 1 131 ILE 131 192 192 ILE ILE A . n A 1 132 ASN 132 193 193 ASN ASN A . n A 1 133 ASN 133 194 194 ASN ASN A . n A 1 134 ASP 134 195 195 ASP ASP A . n A 1 135 ASN 135 196 196 ASN ASN A . n A 1 136 SER 136 197 197 SER SER A . n A 1 137 ASN 137 198 198 ASN ASN A . n A 1 138 VAL 138 199 199 VAL VAL A . n A 1 139 SER 139 200 200 SER SER A . n A 1 140 CYS 140 201 201 CYS CYS A . n A 1 141 ASP 141 202 202 ASP ASP A . n A 1 142 ALA 142 203 203 ALA ALA A . n A 1 143 GLU 143 204 204 GLU GLU A . n A 1 144 PHE 144 205 205 PHE PHE A . n A 1 145 TYR 145 206 206 TYR TYR A . n A 1 146 LEU 146 207 207 LEU LEU A . n A 1 147 ILE 147 208 208 ILE ILE A . n A 1 148 PRO 148 209 209 PRO PRO A . n A 1 149 ARG 149 210 210 ARG ARG A . n A 1 150 SER 150 211 211 SER SER A . n A 1 151 GLN 151 212 212 GLN GLN A . n A 1 152 THR 152 213 213 THR THR A . n A 1 153 GLU 153 214 214 GLU GLU A . n A 1 154 LEU 154 215 215 LEU LEU A . n A 1 155 CYS 155 216 216 CYS CYS A . n A 1 156 THR 156 217 217 THR THR A . n A 1 157 GLN 157 218 218 GLN GLN A . n A 1 158 TYR 158 219 219 TYR TYR A . n A 1 159 ILE 159 220 220 ILE ILE A . n A 1 160 ASN 160 221 221 ASN ASN A . n A 1 161 ASN 161 222 222 ASN ASN A . n A 1 162 GLY 162 223 223 GLY GLY A . n A 1 163 LEU 163 224 224 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . C 3 HOH 20 420 20 HOH HOH A . C 3 HOH 21 421 21 HOH HOH A . C 3 HOH 22 422 22 HOH HOH A . C 3 HOH 23 423 23 HOH HOH A . C 3 HOH 24 424 24 HOH HOH A . C 3 HOH 25 425 25 HOH HOH A . C 3 HOH 26 426 26 HOH HOH A . C 3 HOH 27 427 27 HOH HOH A . C 3 HOH 28 428 28 HOH HOH A . C 3 HOH 29 429 29 HOH HOH A . C 3 HOH 30 430 30 HOH HOH A . C 3 HOH 31 431 31 HOH HOH A . C 3 HOH 32 432 32 HOH HOH A . C 3 HOH 33 433 33 HOH HOH A . C 3 HOH 34 434 34 HOH HOH A . C 3 HOH 35 435 35 HOH HOH A . C 3 HOH 36 436 36 HOH HOH A . C 3 HOH 37 437 37 HOH HOH A . C 3 HOH 38 438 38 HOH HOH A . C 3 HOH 39 439 39 HOH HOH A . C 3 HOH 40 440 40 HOH HOH A . C 3 HOH 41 441 41 HOH HOH A . C 3 HOH 42 442 42 HOH HOH A . C 3 HOH 43 443 43 HOH HOH A . C 3 HOH 44 444 44 HOH HOH A . C 3 HOH 45 445 45 HOH HOH A . C 3 HOH 46 446 46 HOH HOH A . C 3 HOH 47 447 47 HOH HOH A . C 3 HOH 48 448 48 HOH HOH A . C 3 HOH 49 449 49 HOH HOH A . C 3 HOH 50 450 50 HOH HOH A . C 3 HOH 51 451 51 HOH HOH A . C 3 HOH 52 452 52 HOH HOH A . C 3 HOH 53 453 53 HOH HOH A . C 3 HOH 54 454 54 HOH HOH A . C 3 HOH 55 455 55 HOH HOH A . C 3 HOH 56 456 56 HOH HOH A . C 3 HOH 57 457 57 HOH HOH A . C 3 HOH 58 458 58 HOH HOH A . C 3 HOH 59 459 59 HOH HOH A . C 3 HOH 60 460 60 HOH HOH A . C 3 HOH 61 461 61 HOH HOH A . C 3 HOH 62 462 62 HOH HOH A . C 3 HOH 63 463 63 HOH HOH A . C 3 HOH 64 464 64 HOH HOH A . C 3 HOH 65 465 65 HOH HOH A . C 3 HOH 66 466 66 HOH HOH A . C 3 HOH 67 467 67 HOH HOH A . C 3 HOH 68 468 68 HOH HOH A . C 3 HOH 69 469 69 HOH HOH A . C 3 HOH 70 470 70 HOH HOH A . C 3 HOH 71 471 71 HOH HOH A . C 3 HOH 72 472 72 HOH HOH A . C 3 HOH 73 473 73 HOH HOH A . C 3 HOH 74 474 74 HOH HOH A . C 3 HOH 75 475 75 HOH HOH A . C 3 HOH 76 476 76 HOH HOH A . C 3 HOH 77 477 77 HOH HOH A . C 3 HOH 78 478 78 HOH HOH A . C 3 HOH 79 479 79 HOH HOH A . C 3 HOH 80 480 80 HOH HOH A . C 3 HOH 81 481 81 HOH HOH A . C 3 HOH 82 482 82 HOH HOH A . C 3 HOH 83 483 83 HOH HOH A . C 3 HOH 84 484 84 HOH HOH A . C 3 HOH 85 485 85 HOH HOH A . C 3 HOH 86 486 86 HOH HOH A . C 3 HOH 87 487 87 HOH HOH A . C 3 HOH 88 488 88 HOH HOH A . C 3 HOH 89 489 89 HOH HOH A . C 3 HOH 90 490 90 HOH HOH A . C 3 HOH 91 491 91 HOH HOH A . C 3 HOH 92 492 92 HOH HOH A . C 3 HOH 93 493 93 HOH HOH A . C 3 HOH 94 494 94 HOH HOH A . C 3 HOH 95 495 95 HOH HOH A . C 3 HOH 96 496 96 HOH HOH A . C 3 HOH 97 497 97 HOH HOH A . C 3 HOH 98 498 98 HOH HOH A . C 3 HOH 99 499 99 HOH HOH A . C 3 HOH 100 500 100 HOH HOH A . C 3 HOH 101 501 101 HOH HOH A . C 3 HOH 102 502 102 HOH HOH A . C 3 HOH 103 503 103 HOH HOH A . C 3 HOH 104 504 104 HOH HOH A . C 3 HOH 105 505 105 HOH HOH A . C 3 HOH 106 506 106 HOH HOH A . C 3 HOH 107 507 107 HOH HOH A . C 3 HOH 108 508 108 HOH HOH A . C 3 HOH 109 509 109 HOH HOH A . C 3 HOH 110 510 110 HOH HOH A . C 3 HOH 111 511 111 HOH HOH A . C 3 HOH 112 512 112 HOH HOH A . C 3 HOH 113 513 113 HOH HOH A . C 3 HOH 114 514 114 HOH HOH A . C 3 HOH 115 515 115 HOH HOH A . C 3 HOH 116 516 116 HOH HOH A . C 3 HOH 117 517 117 HOH HOH A . C 3 HOH 118 518 118 HOH HOH A . C 3 HOH 119 519 119 HOH HOH A . C 3 HOH 120 520 120 HOH HOH A . C 3 HOH 121 521 121 HOH HOH A . C 3 HOH 122 522 122 HOH HOH A . C 3 HOH 123 523 123 HOH HOH A . C 3 HOH 124 524 124 HOH HOH A . C 3 HOH 125 525 125 HOH HOH A . C 3 HOH 126 526 126 HOH HOH A . C 3 HOH 127 527 127 HOH HOH A . C 3 HOH 128 528 128 HOH HOH A . C 3 HOH 129 529 129 HOH HOH A . C 3 HOH 130 530 130 HOH HOH A . C 3 HOH 131 531 131 HOH HOH A . C 3 HOH 132 532 132 HOH HOH A . C 3 HOH 133 533 133 HOH HOH A . C 3 HOH 134 534 134 HOH HOH A . C 3 HOH 135 535 135 HOH HOH A . C 3 HOH 136 536 136 HOH HOH A . C 3 HOH 137 537 137 HOH HOH A . C 3 HOH 138 538 138 HOH HOH A . C 3 HOH 139 539 139 HOH HOH A . C 3 HOH 140 540 140 HOH HOH A . C 3 HOH 141 541 141 HOH HOH A . C 3 HOH 142 542 142 HOH HOH A . C 3 HOH 143 543 143 HOH HOH A . C 3 HOH 144 544 144 HOH HOH A . C 3 HOH 145 545 145 HOH HOH A . C 3 HOH 146 546 146 HOH HOH A . C 3 HOH 147 547 147 HOH HOH A . C 3 HOH 148 548 148 HOH HOH A . C 3 HOH 149 549 149 HOH HOH A . C 3 HOH 150 550 150 HOH HOH A . C 3 HOH 151 551 151 HOH HOH A . C 3 HOH 152 552 152 HOH HOH A . C 3 HOH 153 553 153 HOH HOH A . C 3 HOH 154 554 154 HOH HOH A . C 3 HOH 155 555 155 HOH HOH A . C 3 HOH 156 556 156 HOH HOH A . C 3 HOH 157 557 157 HOH HOH A . C 3 HOH 158 558 158 HOH HOH A . C 3 HOH 159 559 159 HOH HOH A . C 3 HOH 160 560 160 HOH HOH A . C 3 HOH 161 561 161 HOH HOH A . C 3 HOH 162 562 162 HOH HOH A . C 3 HOH 163 563 163 HOH HOH A . C 3 HOH 164 564 164 HOH HOH A . C 3 HOH 165 565 165 HOH HOH A . C 3 HOH 166 566 166 HOH HOH A . C 3 HOH 167 567 167 HOH HOH A . C 3 HOH 168 568 168 HOH HOH A . C 3 HOH 169 569 169 HOH HOH A . C 3 HOH 170 570 170 HOH HOH A . C 3 HOH 171 571 171 HOH HOH A . C 3 HOH 172 572 172 HOH HOH A . C 3 HOH 173 573 173 HOH HOH A . C 3 HOH 174 574 174 HOH HOH A . C 3 HOH 175 575 175 HOH HOH A . C 3 HOH 176 576 176 HOH HOH A . C 3 HOH 177 577 177 HOH HOH A . C 3 HOH 178 578 178 HOH HOH A . C 3 HOH 179 579 179 HOH HOH A . C 3 HOH 180 580 180 HOH HOH A . C 3 HOH 181 581 181 HOH HOH A . C 3 HOH 182 582 182 HOH HOH A . C 3 HOH 183 583 183 HOH HOH A . C 3 HOH 184 584 184 HOH HOH A . C 3 HOH 185 585 185 HOH HOH A . C 3 HOH 186 586 186 HOH HOH A . C 3 HOH 187 587 187 HOH HOH A . C 3 HOH 188 588 188 HOH HOH A . C 3 HOH 189 589 189 HOH HOH A . C 3 HOH 190 590 190 HOH HOH A . C 3 HOH 191 591 191 HOH HOH A . C 3 HOH 192 592 192 HOH HOH A . C 3 HOH 193 593 193 HOH HOH A . C 3 HOH 194 594 194 HOH HOH A . C 3 HOH 195 595 195 HOH HOH A . C 3 HOH 196 596 196 HOH HOH A . C 3 HOH 197 597 197 HOH HOH A . C 3 HOH 198 598 198 HOH HOH A . C 3 HOH 199 599 199 HOH HOH A . C 3 HOH 200 600 200 HOH HOH A . C 3 HOH 201 601 201 HOH HOH A . C 3 HOH 202 602 202 HOH HOH A . C 3 HOH 203 603 203 HOH HOH A . C 3 HOH 204 604 204 HOH HOH A . C 3 HOH 205 605 205 HOH HOH A . C 3 HOH 206 606 206 HOH HOH A . C 3 HOH 207 607 207 HOH HOH A . C 3 HOH 208 608 208 HOH HOH A . C 3 HOH 209 609 209 HOH HOH A . C 3 HOH 210 610 210 HOH HOH A . C 3 HOH 211 611 211 HOH HOH A . C 3 HOH 212 612 212 HOH HOH A . C 3 HOH 213 613 213 HOH HOH A . C 3 HOH 214 614 214 HOH HOH A . C 3 HOH 215 615 215 HOH HOH A . C 3 HOH 216 616 216 HOH HOH A . C 3 HOH 217 617 217 HOH HOH A . C 3 HOH 218 618 218 HOH HOH A . C 3 HOH 219 619 219 HOH HOH A . C 3 HOH 220 620 220 HOH HOH A . C 3 HOH 221 621 221 HOH HOH A . C 3 HOH 222 622 222 HOH HOH A . C 3 HOH 223 623 223 HOH HOH A . C 3 HOH 224 624 224 HOH HOH A . C 3 HOH 225 625 225 HOH HOH A . C 3 HOH 226 626 226 HOH HOH A . C 3 HOH 227 627 227 HOH HOH A . C 3 HOH 228 628 228 HOH HOH A . C 3 HOH 229 629 229 HOH HOH A . C 3 HOH 230 630 230 HOH HOH A . C 3 HOH 231 631 231 HOH HOH A . C 3 HOH 232 632 232 HOH HOH A . C 3 HOH 233 633 233 HOH HOH A . C 3 HOH 234 634 234 HOH HOH A . C 3 HOH 235 635 235 HOH HOH A . C 3 HOH 236 636 236 HOH HOH A . C 3 HOH 237 637 237 HOH HOH A . C 3 HOH 238 638 238 HOH HOH A . C 3 HOH 239 639 239 HOH HOH A . C 3 HOH 240 640 240 HOH HOH A . C 3 HOH 241 641 241 HOH HOH A . C 3 HOH 242 642 242 HOH HOH A . C 3 HOH 243 643 243 HOH HOH A . C 3 HOH 244 644 244 HOH HOH A . C 3 HOH 245 645 245 HOH HOH A . C 3 HOH 246 646 246 HOH HOH A . C 3 HOH 247 647 247 HOH HOH A . C 3 HOH 248 648 248 HOH HOH A . C 3 HOH 249 649 249 HOH HOH A . C 3 HOH 250 650 250 HOH HOH A . C 3 HOH 251 651 251 HOH HOH A . C 3 HOH 252 652 252 HOH HOH A . C 3 HOH 253 653 253 HOH HOH A . C 3 HOH 254 654 254 HOH HOH A . C 3 HOH 255 655 255 HOH HOH A . C 3 HOH 256 656 256 HOH HOH A . C 3 HOH 257 657 257 HOH HOH A . C 3 HOH 258 658 258 HOH HOH A . C 3 HOH 259 659 259 HOH HOH A . C 3 HOH 260 660 260 HOH HOH A . C 3 HOH 261 661 261 HOH HOH A . C 3 HOH 262 662 262 HOH HOH A . C 3 HOH 263 663 263 HOH HOH A . C 3 HOH 264 664 264 HOH HOH A . C 3 HOH 265 665 265 HOH HOH A . C 3 HOH 266 666 266 HOH HOH A . C 3 HOH 267 667 267 HOH HOH A . C 3 HOH 268 668 268 HOH HOH A . C 3 HOH 269 669 269 HOH HOH A . C 3 HOH 270 670 270 HOH HOH A . C 3 HOH 271 671 271 HOH HOH A . C 3 HOH 272 672 272 HOH HOH A . C 3 HOH 273 673 273 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900132 _pdbx_molecule_features.name 'Blood group A H type 2 antigen, beta anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details 'oligosaccharide with branches' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900132 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-11 2 'Structure model' 1 1 2012-05-23 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2020-08-05 5 'Structure model' 2 2 2023-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' struct_asym 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_ref_seq_dif 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen 18 4 'Structure model' pdbx_molecule_features 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.pdbx_value_order' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 3 'Structure model' '_struct_ref_seq_dif.details' 33 5 'Structure model' '_chem_comp.pdbx_synonyms' 34 5 'Structure model' '_database_2.pdbx_DOI' 35 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.7424 12.9514 6.6126 0.0684 0.0458 0.0688 -0.0115 -0.0075 0.0059 1.0549 0.2421 0.2813 -0.4954 0.3228 -0.1497 -0.0464 -0.0212 0.1076 -0.0054 -0.0326 -0.0017 -0.0567 -0.0327 0.0687 'X-RAY DIFFRACTION' 2 ? refined 18.5508 7.2001 18.8323 0.0562 0.0540 0.0511 -0.0208 0.0131 -0.0171 0.2881 0.1726 0.6634 0.1483 0.1537 -0.1627 0.0708 -0.0588 0.0676 0.0486 -0.0241 -0.0026 0.0282 -0.0225 -0.0401 'X-RAY DIFFRACTION' 3 ? refined 10.5243 3.9040 7.2653 0.0451 0.0422 0.0532 -0.0091 -0.0003 0.0023 0.1655 0.1622 0.7250 -0.0804 0.1895 -0.0077 -0.0048 0.0471 -0.0066 -0.0354 -0.0146 0.0368 0.0704 -0.0479 0.0171 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 62:96) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 97:145) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 146:224) ; # _software.name PHENIX _software.classification refinement _software.version '(phenix.refine: 1.4_162)' _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 99 ? ? -124.71 -51.42 2 1 ASP A 100 ? ? -146.36 11.44 3 1 ASN A 194 ? ? -161.08 95.12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ALA N N N N 31 ALA CA C N S 32 ALA C C N N 33 ALA O O N N 34 ALA CB C N N 35 ALA OXT O N N 36 ALA H H N N 37 ALA H2 H N N 38 ALA HA H N N 39 ALA HB1 H N N 40 ALA HB2 H N N 41 ALA HB3 H N N 42 ALA HXT H N N 43 ARG N N N N 44 ARG CA C N S 45 ARG C C N N 46 ARG O O N N 47 ARG CB C N N 48 ARG CG C N N 49 ARG CD C N N 50 ARG NE N N N 51 ARG CZ C N N 52 ARG NH1 N N N 53 ARG NH2 N N N 54 ARG OXT O N N 55 ARG H H N N 56 ARG H2 H N N 57 ARG HA H N N 58 ARG HB2 H N N 59 ARG HB3 H N N 60 ARG HG2 H N N 61 ARG HG3 H N N 62 ARG HD2 H N N 63 ARG HD3 H N N 64 ARG HE H N N 65 ARG HH11 H N N 66 ARG HH12 H N N 67 ARG HH21 H N N 68 ARG HH22 H N N 69 ARG HXT H N N 70 ASN N N N N 71 ASN CA C N S 72 ASN C C N N 73 ASN O O N N 74 ASN CB C N N 75 ASN CG C N N 76 ASN OD1 O N N 77 ASN ND2 N N N 78 ASN OXT O N N 79 ASN H H N N 80 ASN H2 H N N 81 ASN HA H N N 82 ASN HB2 H N N 83 ASN HB3 H N N 84 ASN HD21 H N N 85 ASN HD22 H N N 86 ASN HXT H N N 87 ASP N N N N 88 ASP CA C N S 89 ASP C C N N 90 ASP O O N N 91 ASP CB C N N 92 ASP CG C N N 93 ASP OD1 O N N 94 ASP OD2 O N N 95 ASP OXT O N N 96 ASP H H N N 97 ASP H2 H N N 98 ASP HA H N N 99 ASP HB2 H N N 100 ASP HB3 H N N 101 ASP HD2 H N N 102 ASP HXT H N N 103 CYS N N N N 104 CYS CA C N R 105 CYS C C N N 106 CYS O O N N 107 CYS CB C N N 108 CYS SG S N N 109 CYS OXT O N N 110 CYS H H N N 111 CYS H2 H N N 112 CYS HA H N N 113 CYS HB2 H N N 114 CYS HB3 H N N 115 CYS HG H N N 116 CYS HXT H N N 117 FUC C1 C N R 118 FUC C2 C N S 119 FUC C3 C N R 120 FUC C4 C N S 121 FUC C5 C N S 122 FUC C6 C N N 123 FUC O1 O N N 124 FUC O2 O N N 125 FUC O3 O N N 126 FUC O4 O N N 127 FUC O5 O N N 128 FUC H1 H N N 129 FUC H2 H N N 130 FUC H3 H N N 131 FUC H4 H N N 132 FUC H5 H N N 133 FUC H61 H N N 134 FUC H62 H N N 135 FUC H63 H N N 136 FUC HO1 H N N 137 FUC HO2 H N N 138 FUC HO3 H N N 139 FUC HO4 H N N 140 GAL C1 C N R 141 GAL C2 C N R 142 GAL C3 C N S 143 GAL C4 C N R 144 GAL C5 C N R 145 GAL C6 C N N 146 GAL O1 O N N 147 GAL O2 O N N 148 GAL O3 O N N 149 GAL O4 O N N 150 GAL O5 O N N 151 GAL O6 O N N 152 GAL H1 H N N 153 GAL H2 H N N 154 GAL H3 H N N 155 GAL H4 H N N 156 GAL H5 H N N 157 GAL H61 H N N 158 GAL H62 H N N 159 GAL HO1 H N N 160 GAL HO2 H N N 161 GAL HO3 H N N 162 GAL HO4 H N N 163 GAL HO6 H N N 164 GLN N N N N 165 GLN CA C N S 166 GLN C C N N 167 GLN O O N N 168 GLN CB C N N 169 GLN CG C N N 170 GLN CD C N N 171 GLN OE1 O N N 172 GLN NE2 N N N 173 GLN OXT O N N 174 GLN H H N N 175 GLN H2 H N N 176 GLN HA H N N 177 GLN HB2 H N N 178 GLN HB3 H N N 179 GLN HG2 H N N 180 GLN HG3 H N N 181 GLN HE21 H N N 182 GLN HE22 H N N 183 GLN HXT H N N 184 GLU N N N N 185 GLU CA C N S 186 GLU C C N N 187 GLU O O N N 188 GLU CB C N N 189 GLU CG C N N 190 GLU CD C N N 191 GLU OE1 O N N 192 GLU OE2 O N N 193 GLU OXT O N N 194 GLU H H N N 195 GLU H2 H N N 196 GLU HA H N N 197 GLU HB2 H N N 198 GLU HB3 H N N 199 GLU HG2 H N N 200 GLU HG3 H N N 201 GLU HE2 H N N 202 GLU HXT H N N 203 GLY N N N N 204 GLY CA C N N 205 GLY C C N N 206 GLY O O N N 207 GLY OXT O N N 208 GLY H H N N 209 GLY H2 H N N 210 GLY HA2 H N N 211 GLY HA3 H N N 212 GLY HXT H N N 213 HOH O O N N 214 HOH H1 H N N 215 HOH H2 H N N 216 ILE N N N N 217 ILE CA C N S 218 ILE C C N N 219 ILE O O N N 220 ILE CB C N S 221 ILE CG1 C N N 222 ILE CG2 C N N 223 ILE CD1 C N N 224 ILE OXT O N N 225 ILE H H N N 226 ILE H2 H N N 227 ILE HA H N N 228 ILE HB H N N 229 ILE HG12 H N N 230 ILE HG13 H N N 231 ILE HG21 H N N 232 ILE HG22 H N N 233 ILE HG23 H N N 234 ILE HD11 H N N 235 ILE HD12 H N N 236 ILE HD13 H N N 237 ILE HXT H N N 238 LEU N N N N 239 LEU CA C N S 240 LEU C C N N 241 LEU O O N N 242 LEU CB C N N 243 LEU CG C N N 244 LEU CD1 C N N 245 LEU CD2 C N N 246 LEU OXT O N N 247 LEU H H N N 248 LEU H2 H N N 249 LEU HA H N N 250 LEU HB2 H N N 251 LEU HB3 H N N 252 LEU HG H N N 253 LEU HD11 H N N 254 LEU HD12 H N N 255 LEU HD13 H N N 256 LEU HD21 H N N 257 LEU HD22 H N N 258 LEU HD23 H N N 259 LEU HXT H N N 260 LYS N N N N 261 LYS CA C N S 262 LYS C C N N 263 LYS O O N N 264 LYS CB C N N 265 LYS CG C N N 266 LYS CD C N N 267 LYS CE C N N 268 LYS NZ N N N 269 LYS OXT O N N 270 LYS H H N N 271 LYS H2 H N N 272 LYS HA H N N 273 LYS HB2 H N N 274 LYS HB3 H N N 275 LYS HG2 H N N 276 LYS HG3 H N N 277 LYS HD2 H N N 278 LYS HD3 H N N 279 LYS HE2 H N N 280 LYS HE3 H N N 281 LYS HZ1 H N N 282 LYS HZ2 H N N 283 LYS HZ3 H N N 284 LYS HXT H N N 285 MET N N N N 286 MET CA C N S 287 MET C C N N 288 MET O O N N 289 MET CB C N N 290 MET CG C N N 291 MET SD S N N 292 MET CE C N N 293 MET OXT O N N 294 MET H H N N 295 MET H2 H N N 296 MET HA H N N 297 MET HB2 H N N 298 MET HB3 H N N 299 MET HG2 H N N 300 MET HG3 H N N 301 MET HE1 H N N 302 MET HE2 H N N 303 MET HE3 H N N 304 MET HXT H N N 305 NAG C1 C N R 306 NAG C2 C N R 307 NAG C3 C N R 308 NAG C4 C N S 309 NAG C5 C N R 310 NAG C6 C N N 311 NAG C7 C N N 312 NAG C8 C N N 313 NAG N2 N N N 314 NAG O1 O N N 315 NAG O3 O N N 316 NAG O4 O N N 317 NAG O5 O N N 318 NAG O6 O N N 319 NAG O7 O N N 320 NAG H1 H N N 321 NAG H2 H N N 322 NAG H3 H N N 323 NAG H4 H N N 324 NAG H5 H N N 325 NAG H61 H N N 326 NAG H62 H N N 327 NAG H81 H N N 328 NAG H82 H N N 329 NAG H83 H N N 330 NAG HN2 H N N 331 NAG HO1 H N N 332 NAG HO3 H N N 333 NAG HO4 H N N 334 NAG HO6 H N N 335 PHE N N N N 336 PHE CA C N S 337 PHE C C N N 338 PHE O O N N 339 PHE CB C N N 340 PHE CG C Y N 341 PHE CD1 C Y N 342 PHE CD2 C Y N 343 PHE CE1 C Y N 344 PHE CE2 C Y N 345 PHE CZ C Y N 346 PHE OXT O N N 347 PHE H H N N 348 PHE H2 H N N 349 PHE HA H N N 350 PHE HB2 H N N 351 PHE HB3 H N N 352 PHE HD1 H N N 353 PHE HD2 H N N 354 PHE HE1 H N N 355 PHE HE2 H N N 356 PHE HZ H N N 357 PHE HXT H N N 358 PRO N N N N 359 PRO CA C N S 360 PRO C C N N 361 PRO O O N N 362 PRO CB C N N 363 PRO CG C N N 364 PRO CD C N N 365 PRO OXT O N N 366 PRO H H N N 367 PRO HA H N N 368 PRO HB2 H N N 369 PRO HB3 H N N 370 PRO HG2 H N N 371 PRO HG3 H N N 372 PRO HD2 H N N 373 PRO HD3 H N N 374 PRO HXT H N N 375 SER N N N N 376 SER CA C N S 377 SER C C N N 378 SER O O N N 379 SER CB C N N 380 SER OG O N N 381 SER OXT O N N 382 SER H H N N 383 SER H2 H N N 384 SER HA H N N 385 SER HB2 H N N 386 SER HB3 H N N 387 SER HG H N N 388 SER HXT H N N 389 THR N N N N 390 THR CA C N S 391 THR C C N N 392 THR O O N N 393 THR CB C N R 394 THR OG1 O N N 395 THR CG2 C N N 396 THR OXT O N N 397 THR H H N N 398 THR H2 H N N 399 THR HA H N N 400 THR HB H N N 401 THR HG1 H N N 402 THR HG21 H N N 403 THR HG22 H N N 404 THR HG23 H N N 405 THR HXT H N N 406 TRP N N N N 407 TRP CA C N S 408 TRP C C N N 409 TRP O O N N 410 TRP CB C N N 411 TRP CG C Y N 412 TRP CD1 C Y N 413 TRP CD2 C Y N 414 TRP NE1 N Y N 415 TRP CE2 C Y N 416 TRP CE3 C Y N 417 TRP CZ2 C Y N 418 TRP CZ3 C Y N 419 TRP CH2 C Y N 420 TRP OXT O N N 421 TRP H H N N 422 TRP H2 H N N 423 TRP HA H N N 424 TRP HB2 H N N 425 TRP HB3 H N N 426 TRP HD1 H N N 427 TRP HE1 H N N 428 TRP HE3 H N N 429 TRP HZ2 H N N 430 TRP HZ3 H N N 431 TRP HH2 H N N 432 TRP HXT H N N 433 TYR N N N N 434 TYR CA C N S 435 TYR C C N N 436 TYR O O N N 437 TYR CB C N N 438 TYR CG C Y N 439 TYR CD1 C Y N 440 TYR CD2 C Y N 441 TYR CE1 C Y N 442 TYR CE2 C Y N 443 TYR CZ C Y N 444 TYR OH O N N 445 TYR OXT O N N 446 TYR H H N N 447 TYR H2 H N N 448 TYR HA H N N 449 TYR HB2 H N N 450 TYR HB3 H N N 451 TYR HD1 H N N 452 TYR HD2 H N N 453 TYR HE1 H N N 454 TYR HE2 H N N 455 TYR HH H N N 456 TYR HXT H N N 457 VAL N N N N 458 VAL CA C N S 459 VAL C C N N 460 VAL O O N N 461 VAL CB C N N 462 VAL CG1 C N N 463 VAL CG2 C N N 464 VAL OXT O N N 465 VAL H H N N 466 VAL H2 H N N 467 VAL HA H N N 468 VAL HB H N N 469 VAL HG11 H N N 470 VAL HG12 H N N 471 VAL HG13 H N N 472 VAL HG21 H N N 473 VAL HG22 H N N 474 VAL HG23 H N N 475 VAL HXT H N N 476 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ALA N CA sing N N 31 ALA N H sing N N 32 ALA N H2 sing N N 33 ALA CA C sing N N 34 ALA CA CB sing N N 35 ALA CA HA sing N N 36 ALA C O doub N N 37 ALA C OXT sing N N 38 ALA CB HB1 sing N N 39 ALA CB HB2 sing N N 40 ALA CB HB3 sing N N 41 ALA OXT HXT sing N N 42 ARG N CA sing N N 43 ARG N H sing N N 44 ARG N H2 sing N N 45 ARG CA C sing N N 46 ARG CA CB sing N N 47 ARG CA HA sing N N 48 ARG C O doub N N 49 ARG C OXT sing N N 50 ARG CB CG sing N N 51 ARG CB HB2 sing N N 52 ARG CB HB3 sing N N 53 ARG CG CD sing N N 54 ARG CG HG2 sing N N 55 ARG CG HG3 sing N N 56 ARG CD NE sing N N 57 ARG CD HD2 sing N N 58 ARG CD HD3 sing N N 59 ARG NE CZ sing N N 60 ARG NE HE sing N N 61 ARG CZ NH1 sing N N 62 ARG CZ NH2 doub N N 63 ARG NH1 HH11 sing N N 64 ARG NH1 HH12 sing N N 65 ARG NH2 HH21 sing N N 66 ARG NH2 HH22 sing N N 67 ARG OXT HXT sing N N 68 ASN N CA sing N N 69 ASN N H sing N N 70 ASN N H2 sing N N 71 ASN CA C sing N N 72 ASN CA CB sing N N 73 ASN CA HA sing N N 74 ASN C O doub N N 75 ASN C OXT sing N N 76 ASN CB CG sing N N 77 ASN CB HB2 sing N N 78 ASN CB HB3 sing N N 79 ASN CG OD1 doub N N 80 ASN CG ND2 sing N N 81 ASN ND2 HD21 sing N N 82 ASN ND2 HD22 sing N N 83 ASN OXT HXT sing N N 84 ASP N CA sing N N 85 ASP N H sing N N 86 ASP N H2 sing N N 87 ASP CA C sing N N 88 ASP CA CB sing N N 89 ASP CA HA sing N N 90 ASP C O doub N N 91 ASP C OXT sing N N 92 ASP CB CG sing N N 93 ASP CB HB2 sing N N 94 ASP CB HB3 sing N N 95 ASP CG OD1 doub N N 96 ASP CG OD2 sing N N 97 ASP OD2 HD2 sing N N 98 ASP OXT HXT sing N N 99 CYS N CA sing N N 100 CYS N H sing N N 101 CYS N H2 sing N N 102 CYS CA C sing N N 103 CYS CA CB sing N N 104 CYS CA HA sing N N 105 CYS C O doub N N 106 CYS C OXT sing N N 107 CYS CB SG sing N N 108 CYS CB HB2 sing N N 109 CYS CB HB3 sing N N 110 CYS SG HG sing N N 111 CYS OXT HXT sing N N 112 FUC C1 C2 sing N N 113 FUC C1 O1 sing N N 114 FUC C1 O5 sing N N 115 FUC C1 H1 sing N N 116 FUC C2 C3 sing N N 117 FUC C2 O2 sing N N 118 FUC C2 H2 sing N N 119 FUC C3 C4 sing N N 120 FUC C3 O3 sing N N 121 FUC C3 H3 sing N N 122 FUC C4 C5 sing N N 123 FUC C4 O4 sing N N 124 FUC C4 H4 sing N N 125 FUC C5 C6 sing N N 126 FUC C5 O5 sing N N 127 FUC C5 H5 sing N N 128 FUC C6 H61 sing N N 129 FUC C6 H62 sing N N 130 FUC C6 H63 sing N N 131 FUC O1 HO1 sing N N 132 FUC O2 HO2 sing N N 133 FUC O3 HO3 sing N N 134 FUC O4 HO4 sing N N 135 GAL C1 C2 sing N N 136 GAL C1 O1 sing N N 137 GAL C1 O5 sing N N 138 GAL C1 H1 sing N N 139 GAL C2 C3 sing N N 140 GAL C2 O2 sing N N 141 GAL C2 H2 sing N N 142 GAL C3 C4 sing N N 143 GAL C3 O3 sing N N 144 GAL C3 H3 sing N N 145 GAL C4 C5 sing N N 146 GAL C4 O4 sing N N 147 GAL C4 H4 sing N N 148 GAL C5 C6 sing N N 149 GAL C5 O5 sing N N 150 GAL C5 H5 sing N N 151 GAL C6 O6 sing N N 152 GAL C6 H61 sing N N 153 GAL C6 H62 sing N N 154 GAL O1 HO1 sing N N 155 GAL O2 HO2 sing N N 156 GAL O3 HO3 sing N N 157 GAL O4 HO4 sing N N 158 GAL O6 HO6 sing N N 159 GLN N CA sing N N 160 GLN N H sing N N 161 GLN N H2 sing N N 162 GLN CA C sing N N 163 GLN CA CB sing N N 164 GLN CA HA sing N N 165 GLN C O doub N N 166 GLN C OXT sing N N 167 GLN CB CG sing N N 168 GLN CB HB2 sing N N 169 GLN CB HB3 sing N N 170 GLN CG CD sing N N 171 GLN CG HG2 sing N N 172 GLN CG HG3 sing N N 173 GLN CD OE1 doub N N 174 GLN CD NE2 sing N N 175 GLN NE2 HE21 sing N N 176 GLN NE2 HE22 sing N N 177 GLN OXT HXT sing N N 178 GLU N CA sing N N 179 GLU N H sing N N 180 GLU N H2 sing N N 181 GLU CA C sing N N 182 GLU CA CB sing N N 183 GLU CA HA sing N N 184 GLU C O doub N N 185 GLU C OXT sing N N 186 GLU CB CG sing N N 187 GLU CB HB2 sing N N 188 GLU CB HB3 sing N N 189 GLU CG CD sing N N 190 GLU CG HG2 sing N N 191 GLU CG HG3 sing N N 192 GLU CD OE1 doub N N 193 GLU CD OE2 sing N N 194 GLU OE2 HE2 sing N N 195 GLU OXT HXT sing N N 196 GLY N CA sing N N 197 GLY N H sing N N 198 GLY N H2 sing N N 199 GLY CA C sing N N 200 GLY CA HA2 sing N N 201 GLY CA HA3 sing N N 202 GLY C O doub N N 203 GLY C OXT sing N N 204 GLY OXT HXT sing N N 205 HOH O H1 sing N N 206 HOH O H2 sing N N 207 ILE N CA sing N N 208 ILE N H sing N N 209 ILE N H2 sing N N 210 ILE CA C sing N N 211 ILE CA CB sing N N 212 ILE CA HA sing N N 213 ILE C O doub N N 214 ILE C OXT sing N N 215 ILE CB CG1 sing N N 216 ILE CB CG2 sing N N 217 ILE CB HB sing N N 218 ILE CG1 CD1 sing N N 219 ILE CG1 HG12 sing N N 220 ILE CG1 HG13 sing N N 221 ILE CG2 HG21 sing N N 222 ILE CG2 HG22 sing N N 223 ILE CG2 HG23 sing N N 224 ILE CD1 HD11 sing N N 225 ILE CD1 HD12 sing N N 226 ILE CD1 HD13 sing N N 227 ILE OXT HXT sing N N 228 LEU N CA sing N N 229 LEU N H sing N N 230 LEU N H2 sing N N 231 LEU CA C sing N N 232 LEU CA CB sing N N 233 LEU CA HA sing N N 234 LEU C O doub N N 235 LEU C OXT sing N N 236 LEU CB CG sing N N 237 LEU CB HB2 sing N N 238 LEU CB HB3 sing N N 239 LEU CG CD1 sing N N 240 LEU CG CD2 sing N N 241 LEU CG HG sing N N 242 LEU CD1 HD11 sing N N 243 LEU CD1 HD12 sing N N 244 LEU CD1 HD13 sing N N 245 LEU CD2 HD21 sing N N 246 LEU CD2 HD22 sing N N 247 LEU CD2 HD23 sing N N 248 LEU OXT HXT sing N N 249 LYS N CA sing N N 250 LYS N H sing N N 251 LYS N H2 sing N N 252 LYS CA C sing N N 253 LYS CA CB sing N N 254 LYS CA HA sing N N 255 LYS C O doub N N 256 LYS C OXT sing N N 257 LYS CB CG sing N N 258 LYS CB HB2 sing N N 259 LYS CB HB3 sing N N 260 LYS CG CD sing N N 261 LYS CG HG2 sing N N 262 LYS CG HG3 sing N N 263 LYS CD CE sing N N 264 LYS CD HD2 sing N N 265 LYS CD HD3 sing N N 266 LYS CE NZ sing N N 267 LYS CE HE2 sing N N 268 LYS CE HE3 sing N N 269 LYS NZ HZ1 sing N N 270 LYS NZ HZ2 sing N N 271 LYS NZ HZ3 sing N N 272 LYS OXT HXT sing N N 273 MET N CA sing N N 274 MET N H sing N N 275 MET N H2 sing N N 276 MET CA C sing N N 277 MET CA CB sing N N 278 MET CA HA sing N N 279 MET C O doub N N 280 MET C OXT sing N N 281 MET CB CG sing N N 282 MET CB HB2 sing N N 283 MET CB HB3 sing N N 284 MET CG SD sing N N 285 MET CG HG2 sing N N 286 MET CG HG3 sing N N 287 MET SD CE sing N N 288 MET CE HE1 sing N N 289 MET CE HE2 sing N N 290 MET CE HE3 sing N N 291 MET OXT HXT sing N N 292 NAG C1 C2 sing N N 293 NAG C1 O1 sing N N 294 NAG C1 O5 sing N N 295 NAG C1 H1 sing N N 296 NAG C2 C3 sing N N 297 NAG C2 N2 sing N N 298 NAG C2 H2 sing N N 299 NAG C3 C4 sing N N 300 NAG C3 O3 sing N N 301 NAG C3 H3 sing N N 302 NAG C4 C5 sing N N 303 NAG C4 O4 sing N N 304 NAG C4 H4 sing N N 305 NAG C5 C6 sing N N 306 NAG C5 O5 sing N N 307 NAG C5 H5 sing N N 308 NAG C6 O6 sing N N 309 NAG C6 H61 sing N N 310 NAG C6 H62 sing N N 311 NAG C7 C8 sing N N 312 NAG C7 N2 sing N N 313 NAG C7 O7 doub N N 314 NAG C8 H81 sing N N 315 NAG C8 H82 sing N N 316 NAG C8 H83 sing N N 317 NAG N2 HN2 sing N N 318 NAG O1 HO1 sing N N 319 NAG O3 HO3 sing N N 320 NAG O4 HO4 sing N N 321 NAG O6 HO6 sing N N 322 PHE N CA sing N N 323 PHE N H sing N N 324 PHE N H2 sing N N 325 PHE CA C sing N N 326 PHE CA CB sing N N 327 PHE CA HA sing N N 328 PHE C O doub N N 329 PHE C OXT sing N N 330 PHE CB CG sing N N 331 PHE CB HB2 sing N N 332 PHE CB HB3 sing N N 333 PHE CG CD1 doub Y N 334 PHE CG CD2 sing Y N 335 PHE CD1 CE1 sing Y N 336 PHE CD1 HD1 sing N N 337 PHE CD2 CE2 doub Y N 338 PHE CD2 HD2 sing N N 339 PHE CE1 CZ doub Y N 340 PHE CE1 HE1 sing N N 341 PHE CE2 CZ sing Y N 342 PHE CE2 HE2 sing N N 343 PHE CZ HZ sing N N 344 PHE OXT HXT sing N N 345 PRO N CA sing N N 346 PRO N CD sing N N 347 PRO N H sing N N 348 PRO CA C sing N N 349 PRO CA CB sing N N 350 PRO CA HA sing N N 351 PRO C O doub N N 352 PRO C OXT sing N N 353 PRO CB CG sing N N 354 PRO CB HB2 sing N N 355 PRO CB HB3 sing N N 356 PRO CG CD sing N N 357 PRO CG HG2 sing N N 358 PRO CG HG3 sing N N 359 PRO CD HD2 sing N N 360 PRO CD HD3 sing N N 361 PRO OXT HXT sing N N 362 SER N CA sing N N 363 SER N H sing N N 364 SER N H2 sing N N 365 SER CA C sing N N 366 SER CA CB sing N N 367 SER CA HA sing N N 368 SER C O doub N N 369 SER C OXT sing N N 370 SER CB OG sing N N 371 SER CB HB2 sing N N 372 SER CB HB3 sing N N 373 SER OG HG sing N N 374 SER OXT HXT sing N N 375 THR N CA sing N N 376 THR N H sing N N 377 THR N H2 sing N N 378 THR CA C sing N N 379 THR CA CB sing N N 380 THR CA HA sing N N 381 THR C O doub N N 382 THR C OXT sing N N 383 THR CB OG1 sing N N 384 THR CB CG2 sing N N 385 THR CB HB sing N N 386 THR OG1 HG1 sing N N 387 THR CG2 HG21 sing N N 388 THR CG2 HG22 sing N N 389 THR CG2 HG23 sing N N 390 THR OXT HXT sing N N 391 TRP N CA sing N N 392 TRP N H sing N N 393 TRP N H2 sing N N 394 TRP CA C sing N N 395 TRP CA CB sing N N 396 TRP CA HA sing N N 397 TRP C O doub N N 398 TRP C OXT sing N N 399 TRP CB CG sing N N 400 TRP CB HB2 sing N N 401 TRP CB HB3 sing N N 402 TRP CG CD1 doub Y N 403 TRP CG CD2 sing Y N 404 TRP CD1 NE1 sing Y N 405 TRP CD1 HD1 sing N N 406 TRP CD2 CE2 doub Y N 407 TRP CD2 CE3 sing Y N 408 TRP NE1 CE2 sing Y N 409 TRP NE1 HE1 sing N N 410 TRP CE2 CZ2 sing Y N 411 TRP CE3 CZ3 doub Y N 412 TRP CE3 HE3 sing N N 413 TRP CZ2 CH2 doub Y N 414 TRP CZ2 HZ2 sing N N 415 TRP CZ3 CH2 sing Y N 416 TRP CZ3 HZ3 sing N N 417 TRP CH2 HH2 sing N N 418 TRP OXT HXT sing N N 419 TYR N CA sing N N 420 TYR N H sing N N 421 TYR N H2 sing N N 422 TYR CA C sing N N 423 TYR CA CB sing N N 424 TYR CA HA sing N N 425 TYR C O doub N N 426 TYR C OXT sing N N 427 TYR CB CG sing N N 428 TYR CB HB2 sing N N 429 TYR CB HB3 sing N N 430 TYR CG CD1 doub Y N 431 TYR CG CD2 sing Y N 432 TYR CD1 CE1 sing Y N 433 TYR CD1 HD1 sing N N 434 TYR CD2 CE2 doub Y N 435 TYR CD2 HD2 sing N N 436 TYR CE1 CZ doub Y N 437 TYR CE1 HE1 sing N N 438 TYR CE2 CZ sing Y N 439 TYR CE2 HE2 sing N N 440 TYR CZ OH sing N N 441 TYR OH HH sing N N 442 TYR OXT HXT sing N N 443 VAL N CA sing N N 444 VAL N H sing N N 445 VAL N H2 sing N N 446 VAL CA C sing N N 447 VAL CA CB sing N N 448 VAL CA HA sing N N 449 VAL C O doub N N 450 VAL C OXT sing N N 451 VAL CB CG1 sing N N 452 VAL CB CG2 sing N N 453 VAL CB HB sing N N 454 VAL CG1 HG11 sing N N 455 VAL CG1 HG12 sing N N 456 VAL CG1 HG13 sing N N 457 VAL CG2 HG21 sing N N 458 VAL CG2 HG22 sing N N 459 VAL CG2 HG23 sing N N 460 VAL OXT HXT sing N N 461 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 1 n B 2 GAL 2 B GAL 2 B GAL 1 n B 2 FUC 3 B FUC 3 B FUC 1 n B 2 A2G 4 B A2G 4 B A2G 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-2[DGalpNAca1-3]DGalpb1-4DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b2-c1_b3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}[(3+1)][a-D-GalpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NAG O4 HO4 sing ? 2 2 3 FUC C1 O1 2 GAL O2 HO2 sing ? 3 2 4 A2G C1 O1 2 GAL O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n 2 FUC 3 n 2 A2G 4 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KQR _pdbx_initial_refinement_model.details ? #