data_4DSD # _entry.id 4DSD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4DSD pdb_00004dsd 10.2210/pdb4dsd/pdb RCSB RCSB070721 ? ? WWPDB D_1000070721 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416999 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4DSD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-02-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative periplasmic protein (BACOVA_05534) from Bacteroides ovatus ATCC 8483 at 1.75 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4DSD _cell.length_a 107.381 _cell.length_b 107.381 _cell.length_c 63.010 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4DSD _symmetry.Int_Tables_number 94 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative periplasmic protein' 14799.221 2 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 8 ? ? ? ? 3 water nat water 18.015 247 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GKDVITKD(MSE)NQLPLPARNFINSNFTKPQVAHIKIDKD(MSE)(MSE)ESTKYEVVL(MSE)DGTEIDFDSKGNWEE VSAKKGQTVPVSIVPGFAVNYLKAHNFVNEGVTKVERDRKGYEIELSTGLSFKFDKKGKFIKTDD ; _entity_poly.pdbx_seq_one_letter_code_can ;GKDVITKDMNQLPLPARNFINSNFTKPQVAHIKIDKDMMESTKYEVVLMDGTEIDFDSKGNWEEVSAKKGQTVPVSIVPG FAVNYLKAHNFVNEGVTKVERDRKGYEIELSTGLSFKFDKKGKFIKTDD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-416999 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 ASP n 1 4 VAL n 1 5 ILE n 1 6 THR n 1 7 LYS n 1 8 ASP n 1 9 MSE n 1 10 ASN n 1 11 GLN n 1 12 LEU n 1 13 PRO n 1 14 LEU n 1 15 PRO n 1 16 ALA n 1 17 ARG n 1 18 ASN n 1 19 PHE n 1 20 ILE n 1 21 ASN n 1 22 SER n 1 23 ASN n 1 24 PHE n 1 25 THR n 1 26 LYS n 1 27 PRO n 1 28 GLN n 1 29 VAL n 1 30 ALA n 1 31 HIS n 1 32 ILE n 1 33 LYS n 1 34 ILE n 1 35 ASP n 1 36 LYS n 1 37 ASP n 1 38 MSE n 1 39 MSE n 1 40 GLU n 1 41 SER n 1 42 THR n 1 43 LYS n 1 44 TYR n 1 45 GLU n 1 46 VAL n 1 47 VAL n 1 48 LEU n 1 49 MSE n 1 50 ASP n 1 51 GLY n 1 52 THR n 1 53 GLU n 1 54 ILE n 1 55 ASP n 1 56 PHE n 1 57 ASP n 1 58 SER n 1 59 LYS n 1 60 GLY n 1 61 ASN n 1 62 TRP n 1 63 GLU n 1 64 GLU n 1 65 VAL n 1 66 SER n 1 67 ALA n 1 68 LYS n 1 69 LYS n 1 70 GLY n 1 71 GLN n 1 72 THR n 1 73 VAL n 1 74 PRO n 1 75 VAL n 1 76 SER n 1 77 ILE n 1 78 VAL n 1 79 PRO n 1 80 GLY n 1 81 PHE n 1 82 ALA n 1 83 VAL n 1 84 ASN n 1 85 TYR n 1 86 LEU n 1 87 LYS n 1 88 ALA n 1 89 HIS n 1 90 ASN n 1 91 PHE n 1 92 VAL n 1 93 ASN n 1 94 GLU n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 LYS n 1 99 VAL n 1 100 GLU n 1 101 ARG n 1 102 ASP n 1 103 ARG n 1 104 LYS n 1 105 GLY n 1 106 TYR n 1 107 GLU n 1 108 ILE n 1 109 GLU n 1 110 LEU n 1 111 SER n 1 112 THR n 1 113 GLY n 1 114 LEU n 1 115 SER n 1 116 PHE n 1 117 LYS n 1 118 PHE n 1 119 ASP n 1 120 LYS n 1 121 LYS n 1 122 GLY n 1 123 LYS n 1 124 PHE n 1 125 ILE n 1 126 LYS n 1 127 THR n 1 128 ASP n 1 129 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACOVA_05534 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8483' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides ovatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411476 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7M5Y8_BACOV _struct_ref.pdbx_db_accession A7M5Y8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KDVITKDMNQLPLPARNFINSNFTKPQVAHIKIDKDMMESTKYEVVLMDGTEIDFDSKGNWEEVSAKKGQTVPVSIVPGF AVNYLKAHNFVNEGVTKVERDRKGYEIELSTGLSFKFDKKGKFIKTDD ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4DSD A 2 ? 129 ? A7M5Y8 21 ? 148 ? 21 148 2 1 4DSD B 2 ? 129 ? A7M5Y8 21 ? 148 ? 21 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4DSD GLY A 1 ? UNP A7M5Y8 ? ? 'expression tag' 0 1 2 4DSD GLY B 1 ? UNP A7M5Y8 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4DSD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '5.0% polyethylene glycol 6000, 0.1M citric acid pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-02-04 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97927 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 0.97927 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4DSD _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 29.892 _reflns.number_all 37675 _reflns.number_obs 37675 _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_redundancy 7.200 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.750 1.800 ? 19788 ? 0.689 1.1 0.689 ? 7.200 ? 2734 100.000 1 1 1.800 1.840 ? 19212 ? 0.520 1.5 0.520 ? 7.200 ? 2654 100.000 2 1 1.840 1.900 ? 18860 ? 0.386 2.0 0.386 ? 7.200 ? 2605 100.000 3 1 1.900 1.960 ? 18404 ? 0.311 2.4 0.311 ? 7.200 ? 2539 100.000 4 1 1.960 2.020 ? 17821 ? 0.216 3.5 0.216 ? 7.300 ? 2456 100.000 5 1 2.020 2.090 ? 17260 ? 0.174 4.3 0.174 ? 7.300 ? 2377 100.000 6 1 2.090 2.170 ? 16650 ? 0.144 5.2 0.144 ? 7.200 ? 2298 100.000 7 1 2.170 2.260 ? 16107 ? 0.126 4.4 0.126 ? 7.300 ? 2220 100.000 8 1 2.260 2.360 ? 15375 ? 0.127 5.3 0.127 ? 7.200 ? 2121 100.000 9 1 2.360 2.470 ? 14794 ? 0.128 5.1 0.128 ? 7.300 ? 2036 100.000 10 1 2.470 2.610 ? 14192 ? 0.118 5.5 0.118 ? 7.200 ? 1959 100.000 11 1 2.610 2.770 ? 13351 ? 0.102 6.4 0.102 ? 7.200 ? 1851 100.000 12 1 2.770 2.960 ? 12553 ? 0.087 7.2 0.087 ? 7.300 ? 1731 100.000 13 1 2.960 3.200 ? 11759 ? 0.077 8.1 0.077 ? 7.200 ? 1639 100.000 14 1 3.200 3.500 ? 10791 ? 0.069 9.0 0.069 ? 7.200 ? 1501 100.000 15 1 3.500 3.910 ? 9812 ? 0.059 10.5 0.059 ? 7.100 ? 1376 100.000 16 1 3.910 4.520 ? 8544 ? 0.054 11.2 0.054 ? 7.000 ? 1228 99.900 17 1 4.520 5.530 ? 7135 ? 0.063 9.3 0.063 ? 6.800 ? 1045 99.900 18 1 5.530 7.830 ? 5580 ? 0.075 8.6 0.075 ? 6.600 ? 844 100.000 19 1 7.830 29.892 ? 2573 ? 0.075 8.6 0.075 ? 5.600 ? 461 93.000 20 1 # _refine.entry_id 4DSD _refine.ls_d_res_high 1.7500 _refine.ls_d_res_low 29.892 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8400 _refine.ls_number_reflns_obs 37622 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYOPROTECTION SOLUTION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1793 _refine.ls_R_factor_R_work 0.1774 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2145 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1881 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 39.2453 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0500 _refine.aniso_B[2][2] -0.0500 _refine.aniso_B[3][3] 0.1100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9570 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0950 _refine.pdbx_overall_ESU_R_Free 0.0980 _refine.overall_SU_ML 0.0680 _refine.overall_SU_B 4.2090 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 111.610 _refine.B_iso_min 18.400 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1998 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 2277 _refine_hist.d_res_high 1.7500 _refine_hist.d_res_low 29.892 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2165 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1529 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2922 1.593 1.963 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3773 0.938 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 279 5.885 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 102 31.039 25.784 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 415 12.874 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 22.092 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 322 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2381 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 410 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7500 _refine_ls_shell.d_res_low 1.7950 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.9600 _refine_ls_shell.number_reflns_R_work 2389 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2420 _refine_ls_shell.R_factor_R_free 0.2910 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2501 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4DSD _struct.title 'Crystal structure of a putative periplasmic protein (BACOVA_05534) from Bacteroides ovatus ATCC 8483 at 1.75 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;BLIP-like fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.entry_id 4DSD # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 3 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? LEU A 12 ? ASP A 27 LEU A 31 5 ? 5 HELX_P HELX_P2 2 PRO A 13 ? PHE A 24 ? PRO A 32 PHE A 43 1 ? 12 HELX_P HELX_P3 3 PRO A 74 ? VAL A 78 ? PRO A 93 VAL A 97 5 ? 5 HELX_P HELX_P4 4 PRO A 79 ? HIS A 89 ? PRO A 98 HIS A 108 1 ? 11 HELX_P HELX_P5 5 ASP B 8 ? LEU B 12 ? ASP B 27 LEU B 31 5 ? 5 HELX_P HELX_P6 6 PRO B 13 ? PHE B 24 ? PRO B 32 PHE B 43 1 ? 12 HELX_P HELX_P7 7 PRO B 74 ? VAL B 78 ? PRO B 93 VAL B 97 5 ? 5 HELX_P HELX_P8 8 PRO B 79 ? HIS B 89 ? PRO B 98 HIS B 108 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 8 C ? ? ? 1_555 A MSE 9 N ? ? A ASP 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 9 C ? ? ? 1_555 A ASN 10 N ? ? A MSE 28 A ASN 29 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A ASP 37 C ? ? ? 1_555 A MSE 38 N ? ? A ASP 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 38 C ? ? ? 1_555 A MSE 39 N ? ? A MSE 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 39 C ? ? ? 1_555 A GLU 40 N ? ? A MSE 58 A GLU 59 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A LEU 48 C ? ? ? 1_555 A MSE 49 N ? ? A LEU 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A MSE 49 C ? ? ? 1_555 A ASP 50 N ? ? A MSE 68 A ASP 69 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? B ASP 8 C ? ? ? 1_555 B MSE 9 N ? ? B ASP 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale9 covale both ? B MSE 9 C ? ? ? 1_555 B ASN 10 N ? ? B MSE 28 B ASN 29 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale10 covale both ? B ASP 37 C ? ? ? 1_555 B MSE 38 N ? ? B ASP 56 B MSE 57 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale both ? B MSE 38 C ? ? ? 1_555 B MSE 39 N ? ? B MSE 57 B MSE 58 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? B MSE 39 C ? ? ? 1_555 B GLU 40 N ? ? B MSE 58 B GLU 59 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? B LEU 48 C ? ? ? 1_555 B MSE 49 N ? ? B LEU 67 B MSE 68 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale14 covale both ? B MSE 49 C ? ? ? 1_555 B ASP 50 N ? ? B MSE 68 B ASP 69 1_555 ? ? ? ? ? ? ? 1.324 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? THR A 6 ? VAL A 23 THR A 25 A 2 VAL A 29 ? LYS A 36 ? VAL A 48 LYS A 55 A 3 THR A 42 ? LEU A 48 ? THR A 61 LEU A 67 A 4 GLU A 53 ? PHE A 56 ? GLU A 72 PHE A 75 A 5 TRP A 62 ? SER A 66 ? TRP A 81 SER A 85 A 6 VAL A 96 ? ASP A 102 ? VAL A 115 ASP A 121 A 7 GLY A 105 ? LEU A 110 ? GLY A 124 LEU A 129 A 8 SER A 115 ? PHE A 118 ? SER A 134 PHE A 137 B 1 VAL B 4 ? THR B 6 ? VAL B 23 THR B 25 B 2 VAL B 29 ? LYS B 36 ? VAL B 48 LYS B 55 B 3 THR B 42 ? LEU B 48 ? THR B 61 LEU B 67 B 4 GLU B 53 ? PHE B 56 ? GLU B 72 PHE B 75 B 5 TRP B 62 ? SER B 66 ? TRP B 81 SER B 85 B 6 VAL B 96 ? ASP B 102 ? VAL B 115 ASP B 121 B 7 GLY B 105 ? LEU B 110 ? GLY B 124 LEU B 129 B 8 SER B 115 ? PHE B 118 ? SER B 134 PHE B 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 4 ? N VAL A 23 O ILE A 34 ? O ILE A 53 A 2 3 N ALA A 30 ? N ALA A 49 O VAL A 47 ? O VAL A 66 A 3 4 N VAL A 46 ? N VAL A 65 O ILE A 54 ? O ILE A 73 A 4 5 N ASP A 55 ? N ASP A 74 O GLU A 63 ? O GLU A 82 A 5 6 N VAL A 65 ? N VAL A 84 O VAL A 99 ? O VAL A 118 A 6 7 N GLU A 100 ? N GLU A 119 O GLU A 107 ? O GLU A 126 A 7 8 N ILE A 108 ? N ILE A 127 O PHE A 116 ? O PHE A 135 B 1 2 N VAL B 4 ? N VAL B 23 O ILE B 34 ? O ILE B 53 B 2 3 N ALA B 30 ? N ALA B 49 O VAL B 47 ? O VAL B 66 B 3 4 N VAL B 46 ? N VAL B 65 O ILE B 54 ? O ILE B 73 B 4 5 N ASP B 55 ? N ASP B 74 O GLU B 63 ? O GLU B 82 B 5 6 N VAL B 65 ? N VAL B 84 O VAL B 99 ? O VAL B 118 B 6 7 N GLU B 100 ? N GLU B 119 O GLU B 107 ? O GLU B 126 B 7 8 N ILE B 108 ? N ILE B 127 O PHE B 116 ? O PHE B 135 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 6 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software A EDO 202 ? 7 'BINDING SITE FOR RESIDUE EDO A 202' AC3 Software A EDO 203 ? 5 'BINDING SITE FOR RESIDUE EDO A 203' AC4 Software B EDO 201 ? 6 'BINDING SITE FOR RESIDUE EDO B 201' AC5 Software B EDO 202 ? 2 'BINDING SITE FOR RESIDUE EDO B 202' AC6 Software B EDO 203 ? 5 'BINDING SITE FOR RESIDUE EDO B 203' AC7 Software B EDO 204 ? 5 'BINDING SITE FOR RESIDUE EDO B 204' AC8 Software B EDO 205 ? 5 'BINDING SITE FOR RESIDUE EDO B 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 102 ? ASP A 121 . ? 1_555 ? 2 AC1 6 ARG A 103 ? ARG A 122 . ? 1_555 ? 3 AC1 6 HOH K . ? HOH A 388 . ? 1_555 ? 4 AC1 6 ASP B 37 ? ASP B 56 . ? 1_555 ? 5 AC1 6 LYS B 43 ? LYS B 62 . ? 1_555 ? 6 AC1 6 EDO F . ? EDO B 201 . ? 1_555 ? 7 AC2 7 GLU A 100 ? GLU A 119 . ? 1_555 ? 8 AC2 7 ASP A 102 ? ASP A 121 . ? 1_555 ? 9 AC2 7 LYS A 104 ? LYS A 123 . ? 1_555 ? 10 AC2 7 GLY A 105 ? GLY A 124 . ? 1_555 ? 11 AC2 7 TYR A 106 ? TYR A 125 . ? 1_555 ? 12 AC2 7 GLU A 107 ? GLU A 126 . ? 1_555 ? 13 AC2 7 HOH K . ? HOH A 305 . ? 1_555 ? 14 AC3 5 LEU A 86 ? LEU A 105 . ? 1_555 ? 15 AC3 5 HOH K . ? HOH A 311 . ? 1_555 ? 16 AC3 5 HOH K . ? HOH A 318 . ? 1_555 ? 17 AC3 5 HOH K . ? HOH A 383 . ? 1_555 ? 18 AC3 5 HOH K . ? HOH A 391 . ? 1_555 ? 19 AC4 6 ASP A 37 ? ASP A 56 . ? 1_555 ? 20 AC4 6 LYS A 43 ? LYS A 62 . ? 1_555 ? 21 AC4 6 EDO C . ? EDO A 201 . ? 1_555 ? 22 AC4 6 ASP B 102 ? ASP B 121 . ? 1_555 ? 23 AC4 6 ARG B 103 ? ARG B 122 . ? 1_555 ? 24 AC4 6 HOH L . ? HOH B 324 . ? 1_555 ? 25 AC5 2 LYS B 2 ? LYS B 21 . ? 1_555 ? 26 AC5 2 ASP B 3 ? ASP B 22 . ? 1_555 ? 27 AC6 5 ASP B 102 ? ASP B 121 . ? 1_555 ? 28 AC6 5 GLY B 105 ? GLY B 124 . ? 1_555 ? 29 AC6 5 LYS B 117 ? LYS B 136 . ? 1_555 ? 30 AC6 5 HOH L . ? HOH B 354 . ? 1_555 ? 31 AC6 5 HOH L . ? HOH B 409 . ? 1_555 ? 32 AC7 5 HOH K . ? HOH A 338 . ? 4_554 ? 33 AC7 5 HOH K . ? HOH A 397 . ? 4_554 ? 34 AC7 5 VAL B 83 ? VAL B 102 . ? 1_555 ? 35 AC7 5 LYS B 87 ? LYS B 106 . ? 1_555 ? 36 AC7 5 EDO J . ? EDO B 205 . ? 1_555 ? 37 AC8 5 GLN A 11 ? GLN A 30 . ? 4_554 ? 38 AC8 5 VAL B 75 ? VAL B 94 . ? 1_555 ? 39 AC8 5 VAL B 92 ? VAL B 111 . ? 1_555 ? 40 AC8 5 EDO I . ? EDO B 204 . ? 1_555 ? 41 AC8 5 HOH L . ? HOH B 360 . ? 1_555 ? # _atom_sites.entry_id 4DSD _atom_sites.fract_transf_matrix[1][1] 0.009313 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009313 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015871 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LYS 2 21 21 LYS LYS A . n A 1 3 ASP 3 22 22 ASP ASP A . n A 1 4 VAL 4 23 23 VAL VAL A . n A 1 5 ILE 5 24 24 ILE ILE A . n A 1 6 THR 6 25 25 THR THR A . n A 1 7 LYS 7 26 26 LYS LYS A . n A 1 8 ASP 8 27 27 ASP ASP A . n A 1 9 MSE 9 28 28 MSE MSE A . n A 1 10 ASN 10 29 29 ASN ASN A . n A 1 11 GLN 11 30 30 GLN GLN A . n A 1 12 LEU 12 31 31 LEU LEU A . n A 1 13 PRO 13 32 32 PRO PRO A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 PRO 15 34 34 PRO PRO A . n A 1 16 ALA 16 35 35 ALA ALA A . n A 1 17 ARG 17 36 36 ARG ARG A . n A 1 18 ASN 18 37 37 ASN ASN A . n A 1 19 PHE 19 38 38 PHE PHE A . n A 1 20 ILE 20 39 39 ILE ILE A . n A 1 21 ASN 21 40 40 ASN ASN A . n A 1 22 SER 22 41 41 SER SER A . n A 1 23 ASN 23 42 42 ASN ASN A . n A 1 24 PHE 24 43 43 PHE PHE A . n A 1 25 THR 25 44 44 THR THR A . n A 1 26 LYS 26 45 45 LYS LYS A . n A 1 27 PRO 27 46 46 PRO PRO A . n A 1 28 GLN 28 47 47 GLN GLN A . n A 1 29 VAL 29 48 48 VAL VAL A . n A 1 30 ALA 30 49 49 ALA ALA A . n A 1 31 HIS 31 50 50 HIS HIS A . n A 1 32 ILE 32 51 51 ILE ILE A . n A 1 33 LYS 33 52 52 LYS LYS A . n A 1 34 ILE 34 53 53 ILE ILE A . n A 1 35 ASP 35 54 54 ASP ASP A . n A 1 36 LYS 36 55 55 LYS LYS A . n A 1 37 ASP 37 56 56 ASP ASP A . n A 1 38 MSE 38 57 57 MSE MSE A . n A 1 39 MSE 39 58 58 MSE MSE A . n A 1 40 GLU 40 59 59 GLU GLU A . n A 1 41 SER 41 60 60 SER SER A . n A 1 42 THR 42 61 61 THR THR A . n A 1 43 LYS 43 62 62 LYS LYS A . n A 1 44 TYR 44 63 63 TYR TYR A . n A 1 45 GLU 45 64 64 GLU GLU A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 VAL 47 66 66 VAL VAL A . n A 1 48 LEU 48 67 67 LEU LEU A . n A 1 49 MSE 49 68 68 MSE MSE A . n A 1 50 ASP 50 69 69 ASP ASP A . n A 1 51 GLY 51 70 70 GLY GLY A . n A 1 52 THR 52 71 71 THR THR A . n A 1 53 GLU 53 72 72 GLU GLU A . n A 1 54 ILE 54 73 73 ILE ILE A . n A 1 55 ASP 55 74 74 ASP ASP A . n A 1 56 PHE 56 75 75 PHE PHE A . n A 1 57 ASP 57 76 76 ASP ASP A . n A 1 58 SER 58 77 77 SER SER A . n A 1 59 LYS 59 78 78 LYS LYS A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 ASN 61 80 80 ASN ASN A . n A 1 62 TRP 62 81 81 TRP TRP A . n A 1 63 GLU 63 82 82 GLU GLU A . n A 1 64 GLU 64 83 83 GLU GLU A . n A 1 65 VAL 65 84 84 VAL VAL A . n A 1 66 SER 66 85 85 SER SER A . n A 1 67 ALA 67 86 86 ALA ALA A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 LYS 69 88 88 LYS LYS A . n A 1 70 GLY 70 89 89 GLY GLY A . n A 1 71 GLN 71 90 90 GLN GLN A . n A 1 72 THR 72 91 91 THR THR A . n A 1 73 VAL 73 92 92 VAL VAL A . n A 1 74 PRO 74 93 93 PRO PRO A . n A 1 75 VAL 75 94 94 VAL VAL A . n A 1 76 SER 76 95 95 SER SER A . n A 1 77 ILE 77 96 96 ILE ILE A . n A 1 78 VAL 78 97 97 VAL VAL A . n A 1 79 PRO 79 98 98 PRO PRO A . n A 1 80 GLY 80 99 99 GLY GLY A . n A 1 81 PHE 81 100 100 PHE PHE A . n A 1 82 ALA 82 101 101 ALA ALA A . n A 1 83 VAL 83 102 102 VAL VAL A . n A 1 84 ASN 84 103 103 ASN ASN A . n A 1 85 TYR 85 104 104 TYR TYR A . n A 1 86 LEU 86 105 105 LEU LEU A . n A 1 87 LYS 87 106 106 LYS LYS A . n A 1 88 ALA 88 107 107 ALA ALA A . n A 1 89 HIS 89 108 108 HIS HIS A . n A 1 90 ASN 90 109 109 ASN ASN A . n A 1 91 PHE 91 110 110 PHE PHE A . n A 1 92 VAL 92 111 111 VAL VAL A . n A 1 93 ASN 93 112 112 ASN ASN A . n A 1 94 GLU 94 113 113 GLU GLU A . n A 1 95 GLY 95 114 114 GLY GLY A . n A 1 96 VAL 96 115 115 VAL VAL A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 LYS 98 117 117 LYS LYS A . n A 1 99 VAL 99 118 118 VAL VAL A . n A 1 100 GLU 100 119 119 GLU GLU A . n A 1 101 ARG 101 120 120 ARG ARG A . n A 1 102 ASP 102 121 121 ASP ASP A . n A 1 103 ARG 103 122 122 ARG ARG A . n A 1 104 LYS 104 123 123 LYS LYS A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 TYR 106 125 125 TYR TYR A . n A 1 107 GLU 107 126 126 GLU GLU A . n A 1 108 ILE 108 127 127 ILE ILE A . n A 1 109 GLU 109 128 128 GLU GLU A . n A 1 110 LEU 110 129 129 LEU LEU A . n A 1 111 SER 111 130 130 SER SER A . n A 1 112 THR 112 131 131 THR THR A . n A 1 113 GLY 113 132 132 GLY GLY A . n A 1 114 LEU 114 133 133 LEU LEU A . n A 1 115 SER 115 134 134 SER SER A . n A 1 116 PHE 116 135 135 PHE PHE A . n A 1 117 LYS 117 136 136 LYS LYS A . n A 1 118 PHE 118 137 137 PHE PHE A . n A 1 119 ASP 119 138 138 ASP ASP A . n A 1 120 LYS 120 139 139 LYS LYS A . n A 1 121 LYS 121 140 140 LYS LYS A . n A 1 122 GLY 122 141 141 GLY GLY A . n A 1 123 LYS 123 142 142 LYS LYS A . n A 1 124 PHE 124 143 143 PHE PHE A . n A 1 125 ILE 125 144 144 ILE ILE A . n A 1 126 LYS 126 145 145 LYS LYS A . n A 1 127 THR 127 146 146 THR THR A . n A 1 128 ASP 128 147 ? ? ? A . n A 1 129 ASP 129 148 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 LYS 2 21 21 LYS LYS B . n B 1 3 ASP 3 22 22 ASP ASP B . n B 1 4 VAL 4 23 23 VAL VAL B . n B 1 5 ILE 5 24 24 ILE ILE B . n B 1 6 THR 6 25 25 THR THR B . n B 1 7 LYS 7 26 26 LYS LYS B . n B 1 8 ASP 8 27 27 ASP ASP B . n B 1 9 MSE 9 28 28 MSE MSE B . n B 1 10 ASN 10 29 29 ASN ASN B . n B 1 11 GLN 11 30 30 GLN GLN B . n B 1 12 LEU 12 31 31 LEU LEU B . n B 1 13 PRO 13 32 32 PRO PRO B . n B 1 14 LEU 14 33 33 LEU LEU B . n B 1 15 PRO 15 34 34 PRO PRO B . n B 1 16 ALA 16 35 35 ALA ALA B . n B 1 17 ARG 17 36 36 ARG ARG B . n B 1 18 ASN 18 37 37 ASN ASN B . n B 1 19 PHE 19 38 38 PHE PHE B . n B 1 20 ILE 20 39 39 ILE ILE B . n B 1 21 ASN 21 40 40 ASN ASN B . n B 1 22 SER 22 41 41 SER SER B . n B 1 23 ASN 23 42 42 ASN ASN B . n B 1 24 PHE 24 43 43 PHE PHE B . n B 1 25 THR 25 44 44 THR THR B . n B 1 26 LYS 26 45 45 LYS LYS B . n B 1 27 PRO 27 46 46 PRO PRO B . n B 1 28 GLN 28 47 47 GLN GLN B . n B 1 29 VAL 29 48 48 VAL VAL B . n B 1 30 ALA 30 49 49 ALA ALA B . n B 1 31 HIS 31 50 50 HIS HIS B . n B 1 32 ILE 32 51 51 ILE ILE B . n B 1 33 LYS 33 52 52 LYS LYS B . n B 1 34 ILE 34 53 53 ILE ILE B . n B 1 35 ASP 35 54 54 ASP ASP B . n B 1 36 LYS 36 55 55 LYS LYS B . n B 1 37 ASP 37 56 56 ASP ASP B . n B 1 38 MSE 38 57 57 MSE MSE B . n B 1 39 MSE 39 58 58 MSE MSE B . n B 1 40 GLU 40 59 59 GLU GLU B . n B 1 41 SER 41 60 60 SER SER B . n B 1 42 THR 42 61 61 THR THR B . n B 1 43 LYS 43 62 62 LYS LYS B . n B 1 44 TYR 44 63 63 TYR TYR B . n B 1 45 GLU 45 64 64 GLU GLU B . n B 1 46 VAL 46 65 65 VAL VAL B . n B 1 47 VAL 47 66 66 VAL VAL B . n B 1 48 LEU 48 67 67 LEU LEU B . n B 1 49 MSE 49 68 68 MSE MSE B . n B 1 50 ASP 50 69 69 ASP ASP B . n B 1 51 GLY 51 70 70 GLY GLY B . n B 1 52 THR 52 71 71 THR THR B . n B 1 53 GLU 53 72 72 GLU GLU B . n B 1 54 ILE 54 73 73 ILE ILE B . n B 1 55 ASP 55 74 74 ASP ASP B . n B 1 56 PHE 56 75 75 PHE PHE B . n B 1 57 ASP 57 76 76 ASP ASP B . n B 1 58 SER 58 77 77 SER SER B . n B 1 59 LYS 59 78 78 LYS LYS B . n B 1 60 GLY 60 79 79 GLY GLY B . n B 1 61 ASN 61 80 80 ASN ASN B . n B 1 62 TRP 62 81 81 TRP TRP B . n B 1 63 GLU 63 82 82 GLU GLU B . n B 1 64 GLU 64 83 83 GLU GLU B . n B 1 65 VAL 65 84 84 VAL VAL B . n B 1 66 SER 66 85 85 SER SER B . n B 1 67 ALA 67 86 86 ALA ALA B . n B 1 68 LYS 68 87 87 LYS LYS B . n B 1 69 LYS 69 88 88 LYS LYS B . n B 1 70 GLY 70 89 89 GLY GLY B . n B 1 71 GLN 71 90 90 GLN GLN B . n B 1 72 THR 72 91 91 THR THR B . n B 1 73 VAL 73 92 92 VAL VAL B . n B 1 74 PRO 74 93 93 PRO PRO B . n B 1 75 VAL 75 94 94 VAL VAL B . n B 1 76 SER 76 95 95 SER SER B . n B 1 77 ILE 77 96 96 ILE ILE B . n B 1 78 VAL 78 97 97 VAL VAL B . n B 1 79 PRO 79 98 98 PRO PRO B . n B 1 80 GLY 80 99 99 GLY GLY B . n B 1 81 PHE 81 100 100 PHE PHE B . n B 1 82 ALA 82 101 101 ALA ALA B . n B 1 83 VAL 83 102 102 VAL VAL B . n B 1 84 ASN 84 103 103 ASN ASN B . n B 1 85 TYR 85 104 104 TYR TYR B . n B 1 86 LEU 86 105 105 LEU LEU B . n B 1 87 LYS 87 106 106 LYS LYS B . n B 1 88 ALA 88 107 107 ALA ALA B . n B 1 89 HIS 89 108 108 HIS HIS B . n B 1 90 ASN 90 109 109 ASN ASN B . n B 1 91 PHE 91 110 110 PHE PHE B . n B 1 92 VAL 92 111 111 VAL VAL B . n B 1 93 ASN 93 112 112 ASN ASN B . n B 1 94 GLU 94 113 113 GLU GLU B . n B 1 95 GLY 95 114 114 GLY GLY B . n B 1 96 VAL 96 115 115 VAL VAL B . n B 1 97 THR 97 116 116 THR THR B . n B 1 98 LYS 98 117 117 LYS LYS B . n B 1 99 VAL 99 118 118 VAL VAL B . n B 1 100 GLU 100 119 119 GLU GLU B . n B 1 101 ARG 101 120 120 ARG ARG B . n B 1 102 ASP 102 121 121 ASP ASP B . n B 1 103 ARG 103 122 122 ARG ARG B . n B 1 104 LYS 104 123 123 LYS LYS B . n B 1 105 GLY 105 124 124 GLY GLY B . n B 1 106 TYR 106 125 125 TYR TYR B . n B 1 107 GLU 107 126 126 GLU GLU B . n B 1 108 ILE 108 127 127 ILE ILE B . n B 1 109 GLU 109 128 128 GLU GLU B . n B 1 110 LEU 110 129 129 LEU LEU B . n B 1 111 SER 111 130 130 SER SER B . n B 1 112 THR 112 131 131 THR THR B . n B 1 113 GLY 113 132 132 GLY GLY B . n B 1 114 LEU 114 133 133 LEU LEU B . n B 1 115 SER 115 134 134 SER SER B . n B 1 116 PHE 116 135 135 PHE PHE B . n B 1 117 LYS 117 136 136 LYS LYS B . n B 1 118 PHE 118 137 137 PHE PHE B . n B 1 119 ASP 119 138 138 ASP ASP B . n B 1 120 LYS 120 139 139 LYS LYS B . n B 1 121 LYS 121 140 140 LYS LYS B . n B 1 122 GLY 122 141 141 GLY GLY B . n B 1 123 LYS 123 142 142 LYS LYS B . n B 1 124 PHE 124 143 143 PHE PHE B . n B 1 125 ILE 125 144 144 ILE ILE B . n B 1 126 LYS 126 145 145 LYS LYS B . n B 1 127 THR 127 146 146 THR THR B . n B 1 128 ASP 128 147 ? ? ? B . n B 1 129 ASP 129 148 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 201 200 EDO EDO A . D 2 EDO 1 202 204 EDO EDO A . E 2 EDO 1 203 206 EDO EDO A . F 2 EDO 1 201 201 EDO EDO B . G 2 EDO 1 202 202 EDO EDO B . H 2 EDO 1 203 203 EDO EDO B . I 2 EDO 1 204 205 EDO EDO B . J 2 EDO 1 205 207 EDO EDO B . K 3 HOH 1 301 208 HOH HOH A . K 3 HOH 2 302 209 HOH HOH A . K 3 HOH 3 303 210 HOH HOH A . K 3 HOH 4 304 213 HOH HOH A . K 3 HOH 5 305 215 HOH HOH A . K 3 HOH 6 306 216 HOH HOH A . K 3 HOH 7 307 218 HOH HOH A . K 3 HOH 8 308 219 HOH HOH A . K 3 HOH 9 309 222 HOH HOH A . K 3 HOH 10 310 223 HOH HOH A . K 3 HOH 11 311 225 HOH HOH A . K 3 HOH 12 312 226 HOH HOH A . K 3 HOH 13 313 228 HOH HOH A . K 3 HOH 14 314 229 HOH HOH A . K 3 HOH 15 315 235 HOH HOH A . K 3 HOH 16 316 236 HOH HOH A . K 3 HOH 17 317 238 HOH HOH A . K 3 HOH 18 318 240 HOH HOH A . K 3 HOH 19 319 241 HOH HOH A . K 3 HOH 20 320 243 HOH HOH A . K 3 HOH 21 321 245 HOH HOH A . K 3 HOH 22 322 246 HOH HOH A . K 3 HOH 23 323 247 HOH HOH A . K 3 HOH 24 324 250 HOH HOH A . K 3 HOH 25 325 251 HOH HOH A . K 3 HOH 26 326 252 HOH HOH A . K 3 HOH 27 327 254 HOH HOH A . K 3 HOH 28 328 259 HOH HOH A . K 3 HOH 29 329 260 HOH HOH A . K 3 HOH 30 330 261 HOH HOH A . K 3 HOH 31 331 262 HOH HOH A . K 3 HOH 32 332 264 HOH HOH A . K 3 HOH 33 333 265 HOH HOH A . K 3 HOH 34 334 266 HOH HOH A . K 3 HOH 35 335 270 HOH HOH A . K 3 HOH 36 336 271 HOH HOH A . K 3 HOH 37 337 274 HOH HOH A . K 3 HOH 38 338 277 HOH HOH A . K 3 HOH 39 339 280 HOH HOH A . K 3 HOH 40 340 281 HOH HOH A . K 3 HOH 41 341 283 HOH HOH A . K 3 HOH 42 342 284 HOH HOH A . K 3 HOH 43 343 286 HOH HOH A . K 3 HOH 44 344 287 HOH HOH A . K 3 HOH 45 345 288 HOH HOH A . K 3 HOH 46 346 290 HOH HOH A . K 3 HOH 47 347 291 HOH HOH A . K 3 HOH 48 348 292 HOH HOH A . K 3 HOH 49 349 293 HOH HOH A . K 3 HOH 50 350 294 HOH HOH A . K 3 HOH 51 351 295 HOH HOH A . K 3 HOH 52 352 296 HOH HOH A . K 3 HOH 53 353 297 HOH HOH A . K 3 HOH 54 354 302 HOH HOH A . K 3 HOH 55 355 305 HOH HOH A . K 3 HOH 56 356 306 HOH HOH A . K 3 HOH 57 357 313 HOH HOH A . K 3 HOH 58 358 314 HOH HOH A . K 3 HOH 59 359 315 HOH HOH A . K 3 HOH 60 360 317 HOH HOH A . K 3 HOH 61 361 318 HOH HOH A . K 3 HOH 62 362 319 HOH HOH A . K 3 HOH 63 363 321 HOH HOH A . K 3 HOH 64 364 323 HOH HOH A . K 3 HOH 65 365 326 HOH HOH A . K 3 HOH 66 366 327 HOH HOH A . K 3 HOH 67 367 330 HOH HOH A . K 3 HOH 68 368 332 HOH HOH A . K 3 HOH 69 369 333 HOH HOH A . K 3 HOH 70 370 334 HOH HOH A . K 3 HOH 71 371 335 HOH HOH A . K 3 HOH 72 372 337 HOH HOH A . K 3 HOH 73 373 339 HOH HOH A . K 3 HOH 74 374 342 HOH HOH A . K 3 HOH 75 375 343 HOH HOH A . K 3 HOH 76 376 344 HOH HOH A . K 3 HOH 77 377 348 HOH HOH A . K 3 HOH 78 378 352 HOH HOH A . K 3 HOH 79 379 353 HOH HOH A . K 3 HOH 80 380 354 HOH HOH A . K 3 HOH 81 381 357 HOH HOH A . K 3 HOH 82 382 358 HOH HOH A . K 3 HOH 83 383 359 HOH HOH A . K 3 HOH 84 384 360 HOH HOH A . K 3 HOH 85 385 364 HOH HOH A . K 3 HOH 86 386 365 HOH HOH A . K 3 HOH 87 387 366 HOH HOH A . K 3 HOH 88 388 367 HOH HOH A . K 3 HOH 89 389 369 HOH HOH A . K 3 HOH 90 390 377 HOH HOH A . K 3 HOH 91 391 378 HOH HOH A . K 3 HOH 92 392 379 HOH HOH A . K 3 HOH 93 393 382 HOH HOH A . K 3 HOH 94 394 384 HOH HOH A . K 3 HOH 95 395 386 HOH HOH A . K 3 HOH 96 396 387 HOH HOH A . K 3 HOH 97 397 388 HOH HOH A . K 3 HOH 98 398 389 HOH HOH A . K 3 HOH 99 399 394 HOH HOH A . K 3 HOH 100 400 395 HOH HOH A . K 3 HOH 101 401 401 HOH HOH A . K 3 HOH 102 402 403 HOH HOH A . K 3 HOH 103 403 404 HOH HOH A . K 3 HOH 104 404 407 HOH HOH A . K 3 HOH 105 405 409 HOH HOH A . K 3 HOH 106 406 411 HOH HOH A . K 3 HOH 107 407 414 HOH HOH A . K 3 HOH 108 408 415 HOH HOH A . K 3 HOH 109 409 420 HOH HOH A . K 3 HOH 110 410 421 HOH HOH A . K 3 HOH 111 411 423 HOH HOH A . K 3 HOH 112 412 424 HOH HOH A . K 3 HOH 113 413 427 HOH HOH A . K 3 HOH 114 414 430 HOH HOH A . K 3 HOH 115 415 434 HOH HOH A . K 3 HOH 116 416 435 HOH HOH A . K 3 HOH 117 417 436 HOH HOH A . K 3 HOH 118 418 437 HOH HOH A . K 3 HOH 119 419 438 HOH HOH A . K 3 HOH 120 420 439 HOH HOH A . K 3 HOH 121 421 440 HOH HOH A . K 3 HOH 122 422 441 HOH HOH A . K 3 HOH 123 423 446 HOH HOH A . K 3 HOH 124 424 447 HOH HOH A . K 3 HOH 125 425 449 HOH HOH A . L 3 HOH 1 301 211 HOH HOH B . L 3 HOH 2 302 212 HOH HOH B . L 3 HOH 3 303 214 HOH HOH B . L 3 HOH 4 304 217 HOH HOH B . L 3 HOH 5 305 220 HOH HOH B . L 3 HOH 6 306 221 HOH HOH B . L 3 HOH 7 307 224 HOH HOH B . L 3 HOH 8 308 227 HOH HOH B . L 3 HOH 9 309 230 HOH HOH B . L 3 HOH 10 310 231 HOH HOH B . L 3 HOH 11 311 232 HOH HOH B . L 3 HOH 12 312 233 HOH HOH B . L 3 HOH 13 313 234 HOH HOH B . L 3 HOH 14 314 237 HOH HOH B . L 3 HOH 15 315 239 HOH HOH B . L 3 HOH 16 316 242 HOH HOH B . L 3 HOH 17 317 244 HOH HOH B . L 3 HOH 18 318 248 HOH HOH B . L 3 HOH 19 319 249 HOH HOH B . L 3 HOH 20 320 253 HOH HOH B . L 3 HOH 21 321 255 HOH HOH B . L 3 HOH 22 322 256 HOH HOH B . L 3 HOH 23 323 257 HOH HOH B . L 3 HOH 24 324 258 HOH HOH B . L 3 HOH 25 325 263 HOH HOH B . L 3 HOH 26 326 267 HOH HOH B . L 3 HOH 27 327 268 HOH HOH B . L 3 HOH 28 328 269 HOH HOH B . L 3 HOH 29 329 272 HOH HOH B . L 3 HOH 30 330 273 HOH HOH B . L 3 HOH 31 331 275 HOH HOH B . L 3 HOH 32 332 276 HOH HOH B . L 3 HOH 33 333 278 HOH HOH B . L 3 HOH 34 334 279 HOH HOH B . L 3 HOH 35 335 282 HOH HOH B . L 3 HOH 36 336 285 HOH HOH B . L 3 HOH 37 337 289 HOH HOH B . L 3 HOH 38 338 298 HOH HOH B . L 3 HOH 39 339 299 HOH HOH B . L 3 HOH 40 340 300 HOH HOH B . L 3 HOH 41 341 301 HOH HOH B . L 3 HOH 42 342 303 HOH HOH B . L 3 HOH 43 343 304 HOH HOH B . L 3 HOH 44 344 307 HOH HOH B . L 3 HOH 45 345 308 HOH HOH B . L 3 HOH 46 346 309 HOH HOH B . L 3 HOH 47 347 310 HOH HOH B . L 3 HOH 48 348 311 HOH HOH B . L 3 HOH 49 349 312 HOH HOH B . L 3 HOH 50 350 316 HOH HOH B . L 3 HOH 51 351 320 HOH HOH B . L 3 HOH 52 352 322 HOH HOH B . L 3 HOH 53 353 324 HOH HOH B . L 3 HOH 54 354 325 HOH HOH B . L 3 HOH 55 355 328 HOH HOH B . L 3 HOH 56 356 329 HOH HOH B . L 3 HOH 57 357 331 HOH HOH B . L 3 HOH 58 358 336 HOH HOH B . L 3 HOH 59 359 338 HOH HOH B . L 3 HOH 60 360 340 HOH HOH B . L 3 HOH 61 361 341 HOH HOH B . L 3 HOH 62 362 345 HOH HOH B . L 3 HOH 63 363 346 HOH HOH B . L 3 HOH 64 364 347 HOH HOH B . L 3 HOH 65 365 349 HOH HOH B . L 3 HOH 66 366 350 HOH HOH B . L 3 HOH 67 367 351 HOH HOH B . L 3 HOH 68 368 355 HOH HOH B . L 3 HOH 69 369 356 HOH HOH B . L 3 HOH 70 370 361 HOH HOH B . L 3 HOH 71 371 362 HOH HOH B . L 3 HOH 72 372 363 HOH HOH B . L 3 HOH 73 373 368 HOH HOH B . L 3 HOH 74 374 370 HOH HOH B . L 3 HOH 75 375 371 HOH HOH B . L 3 HOH 76 376 372 HOH HOH B . L 3 HOH 77 377 373 HOH HOH B . L 3 HOH 78 378 374 HOH HOH B . L 3 HOH 79 379 375 HOH HOH B . L 3 HOH 80 380 376 HOH HOH B . L 3 HOH 81 381 380 HOH HOH B . L 3 HOH 82 382 381 HOH HOH B . L 3 HOH 83 383 383 HOH HOH B . L 3 HOH 84 384 385 HOH HOH B . L 3 HOH 85 385 390 HOH HOH B . L 3 HOH 86 386 391 HOH HOH B . L 3 HOH 87 387 392 HOH HOH B . L 3 HOH 88 388 393 HOH HOH B . L 3 HOH 89 389 396 HOH HOH B . L 3 HOH 90 390 397 HOH HOH B . L 3 HOH 91 391 398 HOH HOH B . L 3 HOH 92 392 399 HOH HOH B . L 3 HOH 93 393 400 HOH HOH B . L 3 HOH 94 394 402 HOH HOH B . L 3 HOH 95 395 405 HOH HOH B . L 3 HOH 96 396 406 HOH HOH B . L 3 HOH 97 397 408 HOH HOH B . L 3 HOH 98 398 410 HOH HOH B . L 3 HOH 99 399 412 HOH HOH B . L 3 HOH 100 400 413 HOH HOH B . L 3 HOH 101 401 416 HOH HOH B . L 3 HOH 102 402 417 HOH HOH B . L 3 HOH 103 403 418 HOH HOH B . L 3 HOH 104 404 419 HOH HOH B . L 3 HOH 105 405 422 HOH HOH B . L 3 HOH 106 406 425 HOH HOH B . L 3 HOH 107 407 426 HOH HOH B . L 3 HOH 108 408 428 HOH HOH B . L 3 HOH 109 409 429 HOH HOH B . L 3 HOH 110 410 431 HOH HOH B . L 3 HOH 111 411 432 HOH HOH B . L 3 HOH 112 412 433 HOH HOH B . L 3 HOH 113 413 442 HOH HOH B . L 3 HOH 114 414 443 HOH HOH B . L 3 HOH 115 415 444 HOH HOH B . L 3 HOH 116 416 445 HOH HOH B . L 3 HOH 117 417 448 HOH HOH B . L 3 HOH 118 418 450 HOH HOH B . L 3 HOH 119 419 451 HOH HOH B . L 3 HOH 120 420 452 HOH HOH B . L 3 HOH 121 421 453 HOH HOH B . L 3 HOH 122 422 454 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 9 A MSE 28 ? MET SELENOMETHIONINE 2 A MSE 38 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 39 A MSE 58 ? MET SELENOMETHIONINE 4 A MSE 49 A MSE 68 ? MET SELENOMETHIONINE 5 B MSE 9 B MSE 28 ? MET SELENOMETHIONINE 6 B MSE 38 B MSE 57 ? MET SELENOMETHIONINE 7 B MSE 39 B MSE 58 ? MET SELENOMETHIONINE 8 B MSE 49 B MSE 68 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,K 2 1 B,F,G,H,I,J,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 27.1620 20.1910 18.3190 0.1338 0.0802 0.0788 -0.0008 0.0397 0.0624 0.2015 2.0919 1.8298 -0.5590 0.4561 -0.7627 0.0359 0.0459 -0.0819 -0.0183 0.0025 0.0534 0.1417 0.2614 -0.1934 'X-RAY DIFFRACTION' 2 ? refined 48.4430 23.9560 7.2020 0.0530 0.1986 0.0098 0.0332 0.0080 0.0182 0.8765 0.3813 1.7720 -0.4316 -0.2344 0.1518 0.0907 -0.0528 -0.0378 0.0768 0.0485 -0.0315 -0.0117 0.1455 0.1628 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 21 A 146 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 21 B 146 ? . . . . ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC . ? ? ? ? refinement ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4DSD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-148 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 82 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 384 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 82 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 82 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.322 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.070 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 45 ? ? 29.86 68.64 2 1 PHE B 110 ? ? -107.00 45.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 88 ? CG ? A LYS 69 CG 2 1 Y 1 A LYS 88 ? CD ? A LYS 69 CD 3 1 Y 1 A LYS 88 ? CE ? A LYS 69 CE 4 1 Y 1 A LYS 88 ? NZ ? A LYS 69 NZ 5 1 Y 1 A LYS 140 ? CD ? A LYS 121 CD 6 1 Y 1 A LYS 140 ? CE ? A LYS 121 CE 7 1 Y 1 A LYS 140 ? NZ ? A LYS 121 NZ 8 1 Y 1 B LYS 88 ? CG ? B LYS 69 CG 9 1 Y 1 B LYS 88 ? CD ? B LYS 69 CD 10 1 Y 1 B LYS 88 ? CE ? B LYS 69 CE 11 1 Y 1 B LYS 88 ? NZ ? B LYS 69 NZ 12 1 Y 1 B LYS 142 ? CD ? B LYS 123 CD 13 1 Y 1 B LYS 142 ? CE ? B LYS 123 CE 14 1 Y 1 B LYS 142 ? NZ ? B LYS 123 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASP 147 ? A ASP 128 3 1 Y 1 A ASP 148 ? A ASP 129 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B ASP 147 ? B ASP 128 6 1 Y 1 B ASP 148 ? B ASP 129 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #