HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-12 4DSD TITLE CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEIN (BACOVA_05534) TITLE 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_05534; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS BLIP-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4DSD 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4DSD 1 JRNL REVDAT 2 15-NOV-17 4DSD 1 REMARK REVDAT 1 21-MAR-12 4DSD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PERIPLASMIC PROTEIN JRNL TITL 2 (BACOVA_05534) FROM BACTEROIDES OVATUS ATCC 8483 AT 1.75 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2165 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1529 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2922 ; 1.593 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3773 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;31.039 ;25.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;12.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.092 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2381 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 410 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1620 20.1910 18.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.0802 REMARK 3 T33: 0.0788 T12: -0.0008 REMARK 3 T13: 0.0397 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 0.2015 L22: 2.0919 REMARK 3 L33: 1.8298 L12: -0.5590 REMARK 3 L13: 0.4561 L23: -0.7627 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.0183 S13: 0.0025 REMARK 3 S21: 0.1417 S22: 0.0459 S23: 0.0534 REMARK 3 S31: 0.2614 S32: -0.1934 S33: -0.0819 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 48.4430 23.9560 7.2020 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.1986 REMARK 3 T33: 0.0098 T12: 0.0332 REMARK 3 T13: 0.0080 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8765 L22: 0.3813 REMARK 3 L33: 1.7720 L12: -0.4316 REMARK 3 L13: -0.2344 L23: 0.1518 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.0768 S13: 0.0485 REMARK 3 S21: -0.0117 S22: -0.0528 S23: -0.0315 REMARK 3 S31: 0.1455 S32: 0.1628 S33: -0.0378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4DSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.892 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : 0.68900 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% POLYETHYLENE GLYCOL 6000, 0.1M REMARK 280 CITRIC ACID PH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.69050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.69050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.50500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.69050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.69050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.50500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.69050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.69050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.50500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.69050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.69050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.50500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 147 REMARK 465 ASP A 148 REMARK 465 GLY B 0 REMARK 465 ASP B 147 REMARK 465 ASP B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 140 CD CE NZ REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 LYS B 142 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 82 O HOH B 384 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 82 CD GLU A 82 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 45 68.64 29.86 REMARK 500 PHE B 110 45.99 -107.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416999 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-148 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4DSD A 21 148 UNP A7M5Y8 A7M5Y8_BACOV 21 148 DBREF 4DSD B 21 148 UNP A7M5Y8 A7M5Y8_BACOV 21 148 SEQADV 4DSD GLY A 0 UNP A7M5Y8 EXPRESSION TAG SEQADV 4DSD GLY B 0 UNP A7M5Y8 EXPRESSION TAG SEQRES 1 A 129 GLY LYS ASP VAL ILE THR LYS ASP MSE ASN GLN LEU PRO SEQRES 2 A 129 LEU PRO ALA ARG ASN PHE ILE ASN SER ASN PHE THR LYS SEQRES 3 A 129 PRO GLN VAL ALA HIS ILE LYS ILE ASP LYS ASP MSE MSE SEQRES 4 A 129 GLU SER THR LYS TYR GLU VAL VAL LEU MSE ASP GLY THR SEQRES 5 A 129 GLU ILE ASP PHE ASP SER LYS GLY ASN TRP GLU GLU VAL SEQRES 6 A 129 SER ALA LYS LYS GLY GLN THR VAL PRO VAL SER ILE VAL SEQRES 7 A 129 PRO GLY PHE ALA VAL ASN TYR LEU LYS ALA HIS ASN PHE SEQRES 8 A 129 VAL ASN GLU GLY VAL THR LYS VAL GLU ARG ASP ARG LYS SEQRES 9 A 129 GLY TYR GLU ILE GLU LEU SER THR GLY LEU SER PHE LYS SEQRES 10 A 129 PHE ASP LYS LYS GLY LYS PHE ILE LYS THR ASP ASP SEQRES 1 B 129 GLY LYS ASP VAL ILE THR LYS ASP MSE ASN GLN LEU PRO SEQRES 2 B 129 LEU PRO ALA ARG ASN PHE ILE ASN SER ASN PHE THR LYS SEQRES 3 B 129 PRO GLN VAL ALA HIS ILE LYS ILE ASP LYS ASP MSE MSE SEQRES 4 B 129 GLU SER THR LYS TYR GLU VAL VAL LEU MSE ASP GLY THR SEQRES 5 B 129 GLU ILE ASP PHE ASP SER LYS GLY ASN TRP GLU GLU VAL SEQRES 6 B 129 SER ALA LYS LYS GLY GLN THR VAL PRO VAL SER ILE VAL SEQRES 7 B 129 PRO GLY PHE ALA VAL ASN TYR LEU LYS ALA HIS ASN PHE SEQRES 8 B 129 VAL ASN GLU GLY VAL THR LYS VAL GLU ARG ASP ARG LYS SEQRES 9 B 129 GLY TYR GLU ILE GLU LEU SER THR GLY LEU SER PHE LYS SEQRES 10 B 129 PHE ASP LYS LYS GLY LYS PHE ILE LYS THR ASP ASP MODRES 4DSD MSE A 28 MET SELENOMETHIONINE MODRES 4DSD MSE A 57 MET SELENOMETHIONINE MODRES 4DSD MSE A 58 MET SELENOMETHIONINE MODRES 4DSD MSE A 68 MET SELENOMETHIONINE MODRES 4DSD MSE B 28 MET SELENOMETHIONINE MODRES 4DSD MSE B 57 MET SELENOMETHIONINE MODRES 4DSD MSE B 58 MET SELENOMETHIONINE MODRES 4DSD MSE B 68 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 57 8 HET MSE A 58 8 HET MSE A 68 8 HET MSE B 28 8 HET MSE B 57 8 HET MSE B 58 8 HET MSE B 68 8 HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *247(H2 O) HELIX 1 1 ASP A 27 LEU A 31 5 5 HELIX 2 2 PRO A 32 PHE A 43 1 12 HELIX 3 3 PRO A 93 VAL A 97 5 5 HELIX 4 4 PRO A 98 HIS A 108 1 11 HELIX 5 5 ASP B 27 LEU B 31 5 5 HELIX 6 6 PRO B 32 PHE B 43 1 12 HELIX 7 7 PRO B 93 VAL B 97 5 5 HELIX 8 8 PRO B 98 HIS B 108 1 11 SHEET 1 A 8 VAL A 23 THR A 25 0 SHEET 2 A 8 VAL A 48 LYS A 55 -1 O ILE A 53 N VAL A 23 SHEET 3 A 8 THR A 61 LEU A 67 -1 O VAL A 66 N ALA A 49 SHEET 4 A 8 GLU A 72 PHE A 75 -1 O ILE A 73 N VAL A 65 SHEET 5 A 8 TRP A 81 SER A 85 -1 O GLU A 82 N ASP A 74 SHEET 6 A 8 VAL A 115 ASP A 121 -1 O VAL A 118 N VAL A 84 SHEET 7 A 8 GLY A 124 LEU A 129 -1 O GLU A 126 N GLU A 119 SHEET 8 A 8 SER A 134 PHE A 137 -1 O PHE A 135 N ILE A 127 SHEET 1 B 8 VAL B 23 THR B 25 0 SHEET 2 B 8 VAL B 48 LYS B 55 -1 O ILE B 53 N VAL B 23 SHEET 3 B 8 THR B 61 LEU B 67 -1 O VAL B 66 N ALA B 49 SHEET 4 B 8 GLU B 72 PHE B 75 -1 O ILE B 73 N VAL B 65 SHEET 5 B 8 TRP B 81 SER B 85 -1 O GLU B 82 N ASP B 74 SHEET 6 B 8 VAL B 115 ASP B 121 -1 O VAL B 118 N VAL B 84 SHEET 7 B 8 GLY B 124 LEU B 129 -1 O GLU B 126 N GLU B 119 SHEET 8 B 8 SER B 134 PHE B 137 -1 O PHE B 135 N ILE B 127 LINK C ASP A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N ASN A 29 1555 1555 1.33 LINK C ASP A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N GLU A 59 1555 1555 1.34 LINK C LEU A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N ASP A 69 1555 1555 1.33 LINK C ASP B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N ASN B 29 1555 1555 1.34 LINK C ASP B 56 N MSE B 57 1555 1555 1.34 LINK C MSE B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N GLU B 59 1555 1555 1.34 LINK C LEU B 67 N MSE B 68 1555 1555 1.32 LINK C MSE B 68 N ASP B 69 1555 1555 1.32 SITE 1 AC1 6 ASP A 121 ARG A 122 HOH A 388 ASP B 56 SITE 2 AC1 6 LYS B 62 EDO B 201 SITE 1 AC2 7 GLU A 119 ASP A 121 LYS A 123 GLY A 124 SITE 2 AC2 7 TYR A 125 GLU A 126 HOH A 305 SITE 1 AC3 5 LEU A 105 HOH A 311 HOH A 318 HOH A 383 SITE 2 AC3 5 HOH A 391 SITE 1 AC4 6 ASP A 56 LYS A 62 EDO A 201 ASP B 121 SITE 2 AC4 6 ARG B 122 HOH B 324 SITE 1 AC5 2 LYS B 21 ASP B 22 SITE 1 AC6 5 ASP B 121 GLY B 124 LYS B 136 HOH B 354 SITE 2 AC6 5 HOH B 409 SITE 1 AC7 5 HOH A 338 HOH A 397 VAL B 102 LYS B 106 SITE 2 AC7 5 EDO B 205 SITE 1 AC8 5 GLN A 30 VAL B 94 VAL B 111 EDO B 204 SITE 2 AC8 5 HOH B 360 CRYST1 107.381 107.381 63.010 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015871 0.00000