HEADER HYDROLASE 20-FEB-12 4DT0 TITLE THE STRUCTURE OF THE PERIPHERAL STALK SUBUNIT E FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE SUBUNIT E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: V-ATPASE SUBUNIT E; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: ATPE, PH1978; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+)-HIS6 KEYWDS HYDROLASE, A-ATP SYNTHASE, PERIPHERAL STALK EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BALAKRISHNA,G.GRUBER REVDAT 4 20-MAR-24 4DT0 1 REMARK REVDAT 3 15-NOV-17 4DT0 1 REMARK REVDAT 2 17-JUL-13 4DT0 1 JRNL REVDAT 1 02-MAY-12 4DT0 0 JRNL AUTH A.M.BALAKRISHNA,C.HUNKE,G.GRUBER JRNL TITL THE STRUCTURE OF SUBUNIT E OF THE PYROCOCCUS HORIKOSHII OT3 JRNL TITL 2 A-ATP SYNTHASE GIVES INSIGHT INTO THE ELASTICITY OF THE JRNL TITL 3 PERIPHERAL STALK. JRNL REF J.MOL.BIOL. V. 420 155 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22516614 JRNL DOI 10.1016/J.JMB.2012.04.012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.LOKANATH,Y.MATSUURA,C.KUROISHI,N.TAKAHASHI,N.KUNISHIMA REMARK 1 TITL DIMERIC CORE STRUCTURE OF MODULAR STATOR SUBUNIT E OF REMARK 1 TITL 2 ARCHAEAL H+ -ATPASE. REMARK 1 REF J.MOL.BIOL. V. 366 933 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17189637 REMARK 1 DOI 10.1016/J.JMB.2006.11.088 REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 2879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.326 REMARK 3 R VALUE (WORKING SET) : 0.323 REMARK 3 FREE R VALUE : 0.357 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 172 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 13 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.748 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.898 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 128.307 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.887 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 897 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1250 ; 1.064 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 180 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 724 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 897 ; 0.346 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1250 ; 0.645 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0024 -9.9240 0.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1071 REMARK 3 T33: 0.2652 T12: 0.0011 REMARK 3 T13: -0.0075 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 7.2929 L22: 0.5545 REMARK 3 L33: 2.8423 L12: 1.3294 REMARK 3 L13: 4.2547 L23: 0.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.2135 S13: -0.2706 REMARK 3 S21: 0.1121 S22: -0.0603 S23: -0.2187 REMARK 3 S31: -0.1382 S32: -0.1232 S33: 0.1008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979, 0.978, 0.963 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING REMARK 200 PREMIRROR, TOROIDAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3564 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 100MM 2 REMARK 280 -MORPHOLINOETHANESULFONIC ACID, SODIUM SALT (PH 6.0), 200MM REMARK 280 CALCIUM ACETATE, 0.01 M POTASSIUM SODIUM TARTRATE TETRAHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.91400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.73300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.86650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.91400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.59950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.59950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.91400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.86650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.91400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.73300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.91400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.73300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.91400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.59950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.86650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.91400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.86650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.59950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.91400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.91400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.73300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 LYS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 PRO A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 ILE A 7 REMARK 465 ILE A 8 REMARK 465 GLN A 9 REMARK 465 GLU A 10 REMARK 465 ILE A 11 REMARK 465 ASN A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 TYR A 21 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 22 CG1 CG2 CD1 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 ASN A 24 CG OD1 ND2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ILE A 33 CG1 CG2 CD1 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 TRP A 47 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 47 CZ3 CH2 REMARK 470 ILE A 48 CG1 CG2 CD1 REMARK 470 ILE A 49 CG1 CG2 CD1 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 THR A 54 OG1 CG2 REMARK 470 GLN A 55 CG CD OE1 NE2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 63 CG1 CG2 CD1 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 ASN A 66 CG OD1 ND2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 VAL A 71 CG1 CG2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 ILE A 78 CG1 CG2 CD1 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ILE A 82 CG1 CG2 CD1 REMARK 470 ILE A 83 CG1 CG2 CD1 REMARK 470 SER A 84 OG REMARK 470 SER A 85 OG REMARK 470 VAL A 86 CG1 CG2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 VAL A 90 CG1 CG2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 94 CG CD1 CD2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 THR A 96 OG1 CG2 REMARK 470 MET A 97 CG SD CE REMARK 470 SER A 98 OG REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 TYR A 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 103 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 SER A 105 OG REMARK 470 VAL A 106 CG1 CG2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 ILE A 114 CG1 CG2 CD1 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LEU A 117 CG CD1 CD2 REMARK 470 ASN A 118 CG OD1 ND2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 VAL A 122 CG1 CG2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 124 CG1 CG2 REMARK 470 MET A 125 CG SD CE REMARK 470 SER A 126 OG REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 THR A 130 OG1 CG2 REMARK 470 LEU A 131 CG CD1 CD2 REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 ILE A 134 CG1 CG2 CD1 REMARK 470 SER A 136 OG REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 ILE A 141 CG1 CG2 CD1 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 SER A 143 OG REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LEU A 145 CG CD1 CD2 REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 VAL A 148 CG1 CG2 REMARK 470 SER A 149 OG REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 THR A 155 OG1 CG2 REMARK 470 VAL A 156 CG1 CG2 REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 THR A 158 OG1 CG2 REMARK 470 MET A 159 CG SD CE REMARK 470 VAL A 162 CG1 CG2 REMARK 470 ILE A 163 CG1 CG2 CD1 REMARK 470 VAL A 164 CG1 CG2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 THR A 166 OG1 CG2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 THR A 176 OG1 CG2 REMARK 470 PHE A 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 MET A 181 CG SD CE REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 184 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 ILE A 188 CG1 CG2 CD1 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 SER A 190 OG REMARK 470 THR A 191 OG1 CG2 REMARK 470 ILE A 192 CG1 CG2 CD1 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 VAL A 195 CG1 CG2 REMARK 470 LEU A 196 CG CD1 CD2 REMARK 470 PHE A 197 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -34.57 -39.01 REMARK 500 LYS A 44 -81.28 -57.25 REMARK 500 GLU A 46 -71.16 -51.98 REMARK 500 THR A 96 68.58 -68.46 REMARK 500 GLU A 99 -107.34 -98.28 REMARK 500 SER A 126 -153.33 -158.63 REMARK 500 ALA A 135 6.14 -66.16 REMARK 500 SER A 136 -99.06 -86.69 REMARK 500 ARG A 137 47.53 -83.58 REMARK 500 LEU A 145 -161.12 66.77 REMARK 500 LEU A 152 175.30 67.00 REMARK 500 ASP A 168 -154.84 -120.89 REMARK 500 THR A 176 -131.00 42.74 REMARK 500 ARG A 180 -81.59 -109.18 REMARK 500 VAL A 195 -62.17 -105.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DM9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PH1978 FROM PYROCOCCUS HORIKOSHII OT3 REMARK 900 RELATED ID: 2DMA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PH1978 FROM PYROCOCCUS HORIKOSHII OT3 (FORM II) DBREF 4DT0 A 2 198 UNP O57724 VATE_PYRHO 2 198 SEQRES 1 A 208 MET LYS HIS HIS HIS HIS HIS HIS PRO MET ALA ASN GLY SEQRES 2 A 208 ALA GLU LEU ILE ILE GLN GLU ILE ASN LYS GLU ALA GLU SEQRES 3 A 208 ARG LYS ILE GLU TYR ILE LEU ASN GLU ALA ARG GLN GLN SEQRES 4 A 208 ALA GLU LYS ILE LYS GLU GLU ALA ARG ARG ASN ALA GLU SEQRES 5 A 208 ALA LYS ALA GLU TRP ILE ILE ARG ARG ALA LYS THR GLN SEQRES 6 A 208 ALA GLU LEU GLU LYS GLN ARG ILE ILE ALA ASN ALA ARG SEQRES 7 A 208 LEU GLU VAL ARG ARG LYS ARG LEU ALA ILE GLN GLU GLU SEQRES 8 A 208 ILE ILE SER SER VAL LEU GLU GLU VAL LYS ARG ARG LEU SEQRES 9 A 208 GLU THR MET SER GLU ASP GLU TYR PHE GLU SER VAL LYS SEQRES 10 A 208 ALA LEU LEU LYS GLU ALA ILE LYS GLU LEU ASN GLU LYS SEQRES 11 A 208 LYS VAL ARG VAL MET SER ASN GLU LYS THR LEU GLY LEU SEQRES 12 A 208 ILE ALA SER ARG ILE GLU GLU ILE LYS SER GLU LEU GLY SEQRES 13 A 208 ASP VAL SER ILE GLU LEU GLY GLU THR VAL ASP THR MET SEQRES 14 A 208 GLY GLY VAL ILE VAL GLU THR GLU ASP GLY ARG ILE ARG SEQRES 15 A 208 ILE ASP ASN THR PHE GLU ALA ARG MET GLU ARG PHE GLU SEQRES 16 A 208 GLY GLU ILE ARG SER THR ILE ALA LYS VAL LEU PHE GLY HELIX 1 1 LYS A 18 ARG A 93 1 76 HELIX 2 2 TYR A 102 ASN A 118 1 17 HELIX 3 3 LYS A 129 ILE A 134 1 6 HELIX 4 4 ARG A 137 LYS A 142 1 6 HELIX 5 5 ARG A 180 LEU A 196 1 17 SHEET 1 A 2 LYS A 121 VAL A 122 0 SHEET 2 A 2 SER A 149 ILE A 150 1 O SER A 149 N VAL A 122 SHEET 1 B 2 VAL A 124 MET A 125 0 SHEET 2 B 2 ILE A 163 VAL A 164 -1 O ILE A 163 N MET A 125 CRYST1 111.828 111.828 95.466 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008942 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010475 0.00000