HEADER TOXIN 21-FEB-12 4DTD TITLE STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF A VIBRIO CHOLERAE TOXIN TITLE 2 FROM THE MARTX/VGRG FAMILY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VGRG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 716-1111; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O395; SOURCE 5 GENE: VC_1416, VGRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG-20A KEYWDS ALPHA-BETA PROTEIN, ACTIN CROSSLINKING DOMAIN (ACD), G-ACTIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA,E.CASCALES, AUTHOR 2 D.RAOULT,C.CAMBILLAU REVDAT 1 29-AUG-12 4DTD 0 JRNL AUTH E.DURAND,G.AUDOLY,E.DERREZ,S.SPINELLI,M.ORTIZ-LOMBARDIA, JRNL AUTH 2 E.CASCALES,D.RAOULT,C.CAMBILLAU JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF A VIBRIO JRNL TITL 2 CHOLERAE TOXIN FROM THE MARTX/VGRG FAMILY. JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2954 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2146 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2810 REMARK 3 BIN R VALUE (WORKING SET) : 0.2109 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.00660 REMARK 3 B22 (A**2) : -10.00660 REMARK 3 B33 (A**2) : 20.01310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2857 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3882 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 985 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 408 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2857 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 384 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3396 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 10 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9854 85.2508 8.3804 REMARK 3 T TENSOR REMARK 3 T11: 0.0019 T22: 0.0094 REMARK 3 T33: 0.0045 T12: -0.0009 REMARK 3 T13: -0.0011 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.1490 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0302 REMARK 3 L13: -0.0092 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.0013 S13: 0.0007 REMARK 3 S21: 0.0040 S22: -0.0005 S23: -0.0003 REMARK 3 S31: 0.0021 S32: -0.0008 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 18 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1127 90.5301 9.7313 REMARK 3 T TENSOR REMARK 3 T11: -0.0762 T22: 0.0383 REMARK 3 T33: 0.0092 T12: -0.0534 REMARK 3 T13: 0.0024 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.5381 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.1072 REMARK 3 L13: -0.0923 L23: 0.3158 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0053 S13: -0.0389 REMARK 3 S21: 0.0329 S22: 0.0165 S23: 0.0088 REMARK 3 S31: 0.0015 S32: -0.0346 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: A 64 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1245 87.4681 -8.0717 REMARK 3 T TENSOR REMARK 3 T11: -0.0591 T22: 0.0507 REMARK 3 T33: 0.0236 T12: 0.0487 REMARK 3 T13: -0.0636 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 0.4076 L22: 0.4955 REMARK 3 L33: 0.9341 L12: 0.5694 REMARK 3 L13: 0.4568 L23: 0.4870 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0185 S13: -0.0156 REMARK 3 S21: -0.0158 S22: -0.0056 S23: 0.0077 REMARK 3 S31: -0.0009 S32: -0.0104 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: A 89 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8781 98.6148 11.8132 REMARK 3 T TENSOR REMARK 3 T11: -0.0704 T22: 0.0501 REMARK 3 T33: -0.0051 T12: -0.0132 REMARK 3 T13: 0.0467 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.4154 L22: 0.3304 REMARK 3 L33: 1.1583 L12: -1.1413 REMARK 3 L13: 0.6122 L23: -0.2086 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0492 S13: 0.0145 REMARK 3 S21: -0.0013 S22: -0.0083 S23: -0.0134 REMARK 3 S31: -0.0046 S32: -0.0629 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: A 127 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 54.7848 92.8268 9.1320 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: 0.0225 REMARK 3 T33: 0.0103 T12: 0.0054 REMARK 3 T13: -0.0496 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.5100 L22: 0.0002 REMARK 3 L33: 0.0000 L12: -0.8149 REMARK 3 L13: 0.2001 L23: 0.5904 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0235 S13: -0.0217 REMARK 3 S21: 0.0072 S22: -0.0128 S23: -0.0032 REMARK 3 S31: -0.0011 S32: 0.0040 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: A 154 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3511 99.7839 0.6172 REMARK 3 T TENSOR REMARK 3 T11: -0.0604 T22: 0.0293 REMARK 3 T33: -0.0175 T12: 0.0368 REMARK 3 T13: 0.0285 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.8305 L22: 0.2844 REMARK 3 L33: 1.3005 L12: -0.1464 REMARK 3 L13: 2.3296 L23: -1.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0049 S13: 0.0278 REMARK 3 S21: -0.0066 S22: -0.0115 S23: -0.0127 REMARK 3 S31: -0.0028 S32: -0.0286 S33: 0.0074 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: A 181 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0810 91.3101 12.9354 REMARK 3 T TENSOR REMARK 3 T11: -0.1319 T22: 0.1625 REMARK 3 T33: -0.0282 T12: 0.0476 REMARK 3 T13: 0.0486 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.8541 L22: 0.0000 REMARK 3 L33: 0.8466 L12: -0.4275 REMARK 3 L13: -0.7434 L23: 0.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0040 S13: 0.0104 REMARK 3 S21: -0.0066 S22: -0.0023 S23: 0.0115 REMARK 3 S31: 0.0030 S32: 0.0078 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: A 217 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9281 85.0554 6.3434 REMARK 3 T TENSOR REMARK 3 T11: -0.1058 T22: 0.1199 REMARK 3 T33: -0.0246 T12: 0.0799 REMARK 3 T13: 0.0084 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 2.1316 L22: 0.2171 REMARK 3 L33: 0.2238 L12: -1.6644 REMARK 3 L13: 1.2502 L23: -1.4322 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0041 S13: -0.0024 REMARK 3 S21: 0.0200 S22: -0.0217 S23: 0.0056 REMARK 3 S31: 0.0180 S32: -0.0063 S33: 0.0116 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: A 247 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0079 85.1268 -8.5924 REMARK 3 T TENSOR REMARK 3 T11: -0.0726 T22: 0.1075 REMARK 3 T33: -0.0339 T12: 0.1362 REMARK 3 T13: 0.0125 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.0961 L22: 0.0173 REMARK 3 L33: 0.1146 L12: -0.4344 REMARK 3 L13: -0.6758 L23: 0.7723 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0004 S13: -0.0183 REMARK 3 S21: -0.0023 S22: -0.0018 S23: -0.0080 REMARK 3 S31: 0.0108 S32: 0.0135 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: A 280 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0559 77.9882 4.7985 REMARK 3 T TENSOR REMARK 3 T11: -0.0703 T22: 0.1128 REMARK 3 T33: -0.0403 T12: 0.0998 REMARK 3 T13: 0.0214 T23: 0.0968 REMARK 3 L TENSOR REMARK 3 L11: 1.1891 L22: 0.0000 REMARK 3 L33: 0.9083 L12: -0.9801 REMARK 3 L13: -0.7863 L23: -0.9087 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.0056 S13: -0.0255 REMARK 3 S21: 0.0155 S22: -0.0195 S23: 0.0082 REMARK 3 S31: 0.0450 S32: -0.0106 S33: 0.0130 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: A 330 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2987 84.5268 15.6485 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: 0.0828 REMARK 3 T33: -0.0493 T12: 0.0417 REMARK 3 T13: -0.0183 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 1.2825 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.4993 REMARK 3 L13: 0.0848 L23: -0.8121 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0220 S13: -0.0024 REMARK 3 S21: 0.0174 S22: -0.0071 S23: -0.0054 REMARK 3 S31: 0.0153 S32: -0.0056 S33: 0.0024 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: A 354 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2556 104.1530 9.8240 REMARK 3 T TENSOR REMARK 3 T11: -0.0143 T22: 0.0244 REMARK 3 T33: -0.0027 T12: 0.0247 REMARK 3 T13: 0.0022 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1073 L22: 0.0152 REMARK 3 L33: 0.0784 L12: -0.1232 REMARK 3 L13: 0.0522 L23: -0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0020 S13: 0.0016 REMARK 3 S21: -0.0010 S22: 0.0013 S23: 0.0010 REMARK 3 S31: -0.0047 S32: -0.0014 S33: -0.0010 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-12. REMARK 100 THE RCSB ID CODE IS RCSB070757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI- REMARK 200 MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 17.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXING 300 NL OF PROTEIN AT 13MG/ML REMARK 280 WITH 100 NL OF 2.17 M AMSO4, 0.1 M BI-TRIS PH 7.0 , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.39000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.13000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.26000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.13000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 128.08000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 128.08000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.13000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -11 REMARK 465 ALA A -10 REMARK 465 GLN A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 SER A -3 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 GLN A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 MSE A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 GLN A 378 REMARK 465 GLN A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 LEU A 383 REMARK 465 VAL A 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 10 -57.51 -127.75 REMARK 500 ASP A 51 -94.63 -117.03 REMARK 500 ASN A 68 -80.91 -50.11 REMARK 500 SER A 175 19.00 52.85 REMARK 500 ASN A 238 -118.31 52.07 REMARK 500 GLU A 264 -58.49 70.01 REMARK 500 ALA A 317 67.08 -154.71 REMARK 500 HIS A 319 111.31 -39.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 10 24.3 L L OUTSIDE RANGE REMARK 500 LYS A 291 23.6 L L OUTSIDE RANGE REMARK 500 HIS A 319 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 559 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH A 563 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 7.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DTF RELATED DB: PDB REMARK 900 RELATED ID: 4DTH RELATED DB: PDB REMARK 900 RELATED ID: 4DTL RELATED DB: PDB REMARK 900 RELATED ID: 4DTQ RELATED DB: PDB DBREF 4DTD A -11 384 UNP Q9KS45 Q9KS45_VIBCH 716 1111 SEQRES 1 A 396 ASN ALA GLN PRO ASN LEU GLY ARG SER THR LYS ALA THR SEQRES 2 A 396 PRO ASP PHE PRO THR HIS PHE PRO LYS SER SER ILE GLY SEQRES 3 A 396 ILE GLU ASN GLU LEU ALA GLY LEU VAL VAL ALA MSE PRO SEQRES 4 A 396 ALA ASN SER ALA GLN LYS PHE GLY TYR VAL LYS SER ALA SEQRES 5 A 396 GLN GLY ASP ALA LEU PHE MSE LEU THR LYS ASP MSE ASN SEQRES 6 A 396 GLN GLY SER TYR GLN ARG PRO PRO SER LEU GLN ASP GLY SEQRES 7 A 396 LYS ASN TYR GLN ASN TRP GLN THR HIS THR VAL GLU LEU SEQRES 8 A 396 VAL SER TYR PRO CYS GLU MSE ASP ASP LYS ALA ALA VAL SEQRES 9 A 396 GLU THR ARG LYS GLN ALA MSE LEU TRP LEU ALA THR HIS SEQRES 10 A 396 PHE THR THR HIS ILE ASP GLN SER ASN HIS GLN PRO LEU SEQRES 11 A 396 ALA PRO ILE GLN SER GLU ASP GLY ARG PHE VAL ILE GLU SEQRES 12 A 396 ILE THR ASN ALA LYS HIS VAL ILE ALA ALA GLY ASN GLY SEQRES 13 A 396 ILE SER ALA GLU SER GLN GLY GLN THR ILE THR MSE THR SEQRES 14 A 396 PRO SER GLY GLN GLN ALA THR VAL GLY VAL ALA ALA LYS SEQRES 15 A 396 GLY PHE GLY THR SER ALA THR PRO GLU LEU ARG LEU LEU SEQRES 16 A 396 GLU SER ALA PRO TRP TYR GLN LYS SER LEU LYS SER GLN SEQRES 17 A 396 PHE ALA SER LEU THR SER ALA GLU ASN LEU ASP ASP LYS SEQRES 18 A 396 GLU LEU ALA ALA ASN VAL PHE ALA TYR LEU THR SER ILE SEQRES 19 A 396 TYR LEU LYS THR ALA GLU LEU ALA LYS LYS PHE GLY ILE SEQRES 20 A 396 TYR ILE ASN GLU TRP ASP PRO MSE SER GLU GLN ILE THR SEQRES 21 A 396 PRO ASN ALA ASN GLY LEU THR ASP PRO LYS VAL LYS ASN SEQRES 22 A 396 ALA TRP GLU ILE LEU PRO ARG THR LYS PRO SER LYS ILE SEQRES 23 A 396 VAL GLU ILE LEU SER LYS SER ASP ALA LYS ALA VAL MSE SEQRES 24 A 396 LYS HIS ILE LYS PRO GLN LEU GLN SER ARG TYR SER GLU SEQRES 25 A 396 SER LEU SER LYS ASN VAL PHE GLN TYR PHE GLN ASP GLY SEQRES 26 A 396 GLY GLU VAL ALA GLY HIS GLY ILE ASN ASN ALA THR VAL SEQRES 27 A 396 GLY ASP LYS HIS SER PRO GLU LEU ALA ILE LEU PHE GLU SEQRES 28 A 396 PHE ARG THR VAL PRO ASN GLU LEU GLN SER TYR LEU PRO SEQRES 29 A 396 LYS THR GLU SER THR THR LYS SER GLU VAL LYS LEU LEU SEQRES 30 A 396 ASP GLN PHE ASP PRO MSE LYS ARG LYS THR VAL ILE GLN SEQRES 31 A 396 GLN VAL GLU SER LEU VAL MODRES 4DTD MSE A 26 MET SELENOMETHIONINE MODRES 4DTD MSE A 47 MET SELENOMETHIONINE MODRES 4DTD MSE A 52 MET SELENOMETHIONINE MODRES 4DTD MSE A 86 MET SELENOMETHIONINE MODRES 4DTD MSE A 99 MET SELENOMETHIONINE MODRES 4DTD MSE A 156 MET SELENOMETHIONINE MODRES 4DTD MSE A 243 MET SELENOMETHIONINE MODRES 4DTD MSE A 287 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 47 8 HET MSE A 52 8 HET MSE A 86 8 HET MSE A 99 8 HET MSE A 156 8 HET MSE A 243 8 HET MSE A 287 8 HET GOL A 401 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *160(H2 O) HELIX 1 1 PRO A 60 GLN A 64 5 5 HELIX 2 2 ASP A 88 SER A 113 1 26 HELIX 3 3 LYS A 170 PHE A 172 5 3 HELIX 4 4 THR A 177 SER A 185 1 9 HELIX 5 5 SER A 192 THR A 201 1 10 HELIX 6 6 ASP A 208 GLY A 234 1 27 HELIX 7 7 ASP A 241 GLN A 246 5 6 HELIX 8 8 ASP A 256 GLU A 264 1 9 HELIX 9 9 LYS A 270 LEU A 278 5 9 HELIX 10 10 SER A 279 SER A 296 1 18 HELIX 11 11 SER A 299 ASP A 312 1 14 HELIX 12 12 LEU A 347 LEU A 351 5 5 SHEET 1 A10 VAL A 138 ALA A 141 0 SHEET 2 A10 LEU A 22 PRO A 27 -1 N ALA A 25 O VAL A 138 SHEET 3 A10 TRP A 72 SER A 81 -1 O GLN A 73 N MSE A 26 SHEET 4 A10 ALA A 44 SER A 56 -1 N GLN A 54 O THR A 74 SHEET 5 A10 LYS A 33 SER A 39 -1 N GLY A 35 O LEU A 48 SHEET 6 A10 PHE A 128 ILE A 132 -1 O GLU A 131 N TYR A 36 SHEET 7 A10 HIS A 7 PHE A 8 0 SHEET 8 A10 THR A 325 GLY A 327 1 O GLY A 327 N PHE A 8 SHEET 9 A10 PRO A 332 PHE A 340 -1 O GLU A 333 N VAL A 326 SHEET 10 A10 ILE A 265 PRO A 267 -1 N LEU A 266 O GLU A 339 SHEET 1 B 3 GLN A 161 ALA A 168 0 SHEET 2 B 3 SER A 11 GLU A 18 -1 N SER A 12 O GLY A 166 SHEET 3 B 3 CYS A 84 GLU A 85 -1 O CYS A 84 N ILE A 13 LINK C ALA A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N PRO A 27 1555 1555 1.35 LINK C PHE A 46 N MSE A 47 1555 1555 1.32 LINK C MSE A 47 N LEU A 48 1555 1555 1.33 LINK C ASP A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ASN A 53 1555 1555 1.34 LINK C GLU A 85 N MSE A 86 1555 1555 1.34 LINK C MSE A 86 N ASP A 87 1555 1555 1.34 LINK C ALA A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N LEU A 100 1555 1555 1.36 LINK C THR A 155 N MSE A 156 1555 1555 1.35 LINK C MSE A 156 N THR A 157 1555 1555 1.32 LINK C PRO A 242 N MSE A 243 1555 1555 1.35 LINK C MSE A 243 N SER A 244 1555 1555 1.36 LINK C VAL A 286 N MSE A 287 1555 1555 1.34 LINK C MSE A 287 N LYS A 288 1555 1555 1.35 SITE 1 AC1 6 LYS A 50 GLY A 55 SER A 56 HIS A 75 SITE 2 AC1 6 HOH A 535 HOH A 641 CRYST1 128.080 128.080 76.520 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013068 0.00000