HEADER ISOMERASE/ISOMERASE INHIBITOR 22-FEB-12 4DUH TITLE CRYSTAL STRUCTURE OF 24 KDA DOMAIN OF E. COLI DNA GYRASE B IN COMPLEX TITLE 2 WITH SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GYRB, ACRB, HIMB, HISU, NALC, PARA, PCBA, B3699, JW5625; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASIMD; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS STRUCTURE-BASED DRUG DESIGN, ANTIBACTERIAL, DNA GYRASE B, GYRASE, KEYWDS 2 ISOMERASE-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.BRVAR,M.RENKO,A.PERDIH,T.SOLMAJER,D.TURK REVDAT 3 13-SEP-23 4DUH 1 REMARK REVDAT 2 08-AUG-12 4DUH 1 JRNL REVDAT 1 01-AUG-12 4DUH 0 JRNL AUTH M.BRVAR,A.PERDIH,M.RENKO,G.ANDERLUH,D.TURK,T.SOLMAJER JRNL TITL STRUCTURE-BASED DISCOVERY OF SUBSTITUTED 4,5'-BITHIAZOLES AS JRNL TITL 2 NOVEL DNA GYRASE INHIBITORS. JRNL REF J.MED.CHEM. V. 55 6413 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22731783 JRNL DOI 10.1021/JM300395D REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 67460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3105 ; 0.018 ; 0.039 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4199 ; 1.528 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.829 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;41.108 ;24.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;13.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2376 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1913 ; 1.747 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3081 ; 2.829 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1192 ; 3.979 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1118 ; 6.372 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 78.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 22% PEG 3350, 0.2M NANO3, PH REMARK 280 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.56100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 TYR A 109 REMARK 465 LYS A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 HIS A 116 REMARK 465 TYR A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 TYR B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 LYS B 11 REMARK 465 ASP B 105 REMARK 465 ASP B 106 REMARK 465 ASN B 107 REMARK 465 SER B 108 REMARK 465 TYR B 109 REMARK 465 LYS B 110 REMARK 465 VAL B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 LEU B 115 REMARK 465 HIS B 116 REMARK 465 TYR B 218 REMARK 465 GLU B 219 REMARK 465 GLY B 220 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 14 CG CD CE NZ REMARK 480 GLU B 185 CG CD OE1 OE2 REMARK 480 LYS B 212 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 490 O HOH B 408 1455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 95 CG - SD - CE ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 178 -86.79 66.95 REMARK 500 ASN B 178 -85.76 70.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RLI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RLI B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KZN RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH CLOROBIOCIN REMARK 900 RELATED ID: 1AJ6 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH NOVOBIOCIN DBREF 4DUH A 1 220 UNP P0AES6 GYRB_ECOLI 1 220 DBREF 4DUH B 1 220 UNP P0AES6 GYRB_ECOLI 1 220 SEQRES 1 A 220 MET SER ASN SER TYR ASP SER SER SER ILE LYS VAL LEU SEQRES 2 A 220 LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 3 A 220 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 4 A 220 VAL PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU SEQRES 5 A 220 ALA GLY HIS CYS LYS GLU ILE ILE VAL THR ILE HIS ALA SEQRES 6 A 220 ASP ASN SER VAL SER VAL GLN ASP ASP GLY ARG GLY ILE SEQRES 7 A 220 PRO THR GLY ILE HIS PRO GLU GLU GLY VAL SER ALA ALA SEQRES 8 A 220 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 9 A 220 ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 A 220 VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU SEQRES 11 A 220 GLU LEU VAL ILE GLN ARG GLU GLY LYS ILE HIS ARG GLN SEQRES 12 A 220 ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL SEQRES 13 A 220 THR GLY GLU THR GLU LYS THR GLY THR MET VAL ARG PHE SEQRES 14 A 220 TRP PRO SER LEU GLU THR PHE THR ASN VAL THR GLU PHE SEQRES 15 A 220 GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER SEQRES 16 A 220 PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS SEQRES 17 A 220 ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY SEQRES 1 B 220 MET SER ASN SER TYR ASP SER SER SER ILE LYS VAL LEU SEQRES 2 B 220 LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR SEQRES 3 B 220 ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET SEQRES 4 B 220 VAL PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU SEQRES 5 B 220 ALA GLY HIS CYS LYS GLU ILE ILE VAL THR ILE HIS ALA SEQRES 6 B 220 ASP ASN SER VAL SER VAL GLN ASP ASP GLY ARG GLY ILE SEQRES 7 B 220 PRO THR GLY ILE HIS PRO GLU GLU GLY VAL SER ALA ALA SEQRES 8 B 220 GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE SEQRES 9 B 220 ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 B 220 VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU SEQRES 11 B 220 GLU LEU VAL ILE GLN ARG GLU GLY LYS ILE HIS ARG GLN SEQRES 12 B 220 ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL SEQRES 13 B 220 THR GLY GLU THR GLU LYS THR GLY THR MET VAL ARG PHE SEQRES 14 B 220 TRP PRO SER LEU GLU THR PHE THR ASN VAL THR GLU PHE SEQRES 15 B 220 GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER SEQRES 16 B 220 PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS SEQRES 17 B 220 ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY HET RLI A 301 26 HET RLI B 301 26 HETNAM RLI 4-{[4'-METHYL-2'-(PROPANOYLAMINO)-4,5'-BI-1,3-THIAZOL- HETNAM 2 RLI 2-YL]AMINO}BENZOIC ACID FORMUL 3 RLI 2(C17 H16 N4 O3 S2) FORMUL 5 HOH *477(H2 O) HELIX 1 1 GLY A 15 ARG A 22 1 8 HELIX 2 2 PRO A 23 GLY A 28 1 6 HELIX 3 3 GLY A 33 GLY A 54 1 22 HELIX 4 4 ALA A 90 VAL A 97 1 8 HELIX 5 5 GLY A 119 LEU A 126 1 8 HELIX 6 6 GLU A 183 ASN A 198 1 16 HELIX 7 7 LEU B 13 ARG B 22 1 10 HELIX 8 8 PRO B 23 GLY B 28 1 6 HELIX 9 9 GLY B 33 ALA B 53 1 21 HELIX 10 10 SER B 89 VAL B 97 1 9 HELIX 11 11 GLY B 119 LEU B 126 1 8 HELIX 12 12 GLU B 183 ASN B 198 1 16 SHEET 1 A 3 VAL A 149 PRO A 150 0 SHEET 2 A 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 A 3 ALA A 155 GLU A 159 -1 O THR A 157 N ILE A 140 SHEET 1 B 8 VAL A 149 PRO A 150 0 SHEET 2 B 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 B 8 SER A 127 ARG A 136 -1 N LEU A 132 O GLN A 143 SHEET 4 B 8 GLY A 164 PRO A 171 -1 O GLY A 164 N GLN A 135 SHEET 5 B 8 VAL A 69 ASP A 73 -1 N ASP A 73 O THR A 165 SHEET 6 B 8 GLU A 58 ILE A 63 -1 N THR A 62 O SER A 70 SHEET 7 B 8 SER A 202 ASP A 207 1 O ARG A 204 N VAL A 61 SHEET 8 B 8 GLU A 213 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 C 2 ILE A 82 HIS A 83 0 SHEET 2 C 2 VAL A 88 SER A 89 -1 O VAL A 88 N HIS A 83 SHEET 1 D 3 VAL B 149 PRO B 150 0 SHEET 2 D 3 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 D 3 ALA B 155 GLU B 159 -1 O ALA B 155 N ARG B 142 SHEET 1 E 8 VAL B 149 PRO B 150 0 SHEET 2 E 8 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 E 8 SER B 127 ARG B 136 -1 N LEU B 132 O GLN B 143 SHEET 4 E 8 GLY B 164 PRO B 171 -1 O ARG B 168 N GLU B 131 SHEET 5 E 8 VAL B 69 ASP B 73 -1 N ASP B 73 O THR B 165 SHEET 6 E 8 GLU B 58 ILE B 63 -1 N THR B 62 O SER B 70 SHEET 7 E 8 SER B 202 ASP B 207 1 O ARG B 206 N ILE B 63 SHEET 8 E 8 GLU B 213 PHE B 216 -1 O PHE B 216 N ILE B 203 CISPEP 1 PHE A 216 HIS A 217 0 -2.53 SITE 1 AC1 13 VAL A 43 ASN A 46 GLU A 50 ASP A 73 SITE 2 AC1 13 ARG A 76 ILE A 78 PRO A 79 GLY A 101 SITE 3 AC1 13 LYS A 103 ARG A 136 THR A 165 HOH A 614 SITE 4 AC1 13 HOH A 702 SITE 1 AC2 13 VAL B 43 ASN B 46 GLU B 50 VAL B 71 SITE 2 AC2 13 ASP B 73 ARG B 76 ILE B 78 PRO B 79 SITE 3 AC2 13 ILE B 94 GLY B 101 ARG B 136 THR B 165 SITE 4 AC2 13 HOH B 451 CRYST1 53.236 51.122 79.130 90.00 95.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018784 0.000000 0.001869 0.00000 SCALE2 0.000000 0.019561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012700 0.00000