HEADER VIRAL PROTEIN/TRANSCRIPTION INHIBITOR 23-FEB-12 4DVS TITLE CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN COMPLEX TITLE 2 WITH NBD-557 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: HIV-1 ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1 GP120, SMALL MOLECULE INHIBITOR, CD4 BINDING SITE, NBD-557, KEYWDS 2 VIRAL PROTEIN-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,P.D.KWONG REVDAT 6 13-SEP-23 4DVS 1 HETSYN REVDAT 5 29-JUL-20 4DVS 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 31-MAY-17 4DVS 1 COMPND SOURCE DBREF REVDAT 3 17-DEC-14 4DVS 1 HETSYN COMPND REVDAT 2 19-MAR-14 4DVS 1 JRNL REVDAT 1 27-FEB-13 4DVS 0 JRNL AUTH Y.D.KWON,J.M.LALONDE,Y.YANG,M.A.ELBAN,A.SUGAWARA, JRNL AUTH 2 J.R.COURTER,D.M.JONES,A.B.SMITH,A.K.DEBNATH,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF HIV-1 GP120 ENVELOPE GLYCOPROTEIN IN JRNL TITL 2 COMPLEX WITH NBD ANALOGUES THAT TARGET THE CD4-BINDING SITE. JRNL REF PLOS ONE V. 9 85940 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24489681 JRNL DOI 10.1371/JOURNAL.PONE.0085940 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 41640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0687 - 5.1156 0.99 3205 159 0.1754 0.2025 REMARK 3 2 5.1156 - 4.0660 0.98 3061 161 0.1597 0.1969 REMARK 3 3 4.0660 - 3.5537 0.97 3062 174 0.1757 0.2138 REMARK 3 4 3.5537 - 3.2295 0.97 3036 147 0.1975 0.2256 REMARK 3 5 3.2295 - 2.9984 0.97 3042 158 0.2032 0.2615 REMARK 3 6 2.9984 - 2.8219 0.97 2974 177 0.2131 0.2526 REMARK 3 7 2.8219 - 2.6808 0.95 2993 137 0.2150 0.2483 REMARK 3 8 2.6808 - 2.5642 0.94 2907 169 0.2100 0.2506 REMARK 3 9 2.5642 - 2.4656 0.92 2843 166 0.2214 0.2676 REMARK 3 10 2.4656 - 2.3805 0.86 2703 147 0.2307 0.2801 REMARK 3 11 2.3805 - 2.3062 0.83 2525 141 0.2268 0.3058 REMARK 3 12 2.3062 - 2.2403 0.75 2303 133 0.2434 0.3038 REMARK 3 13 2.2403 - 2.1813 0.65 2043 94 0.2508 0.3027 REMARK 3 14 2.1813 - 2.1282 0.53 1651 72 0.2650 0.3154 REMARK 3 15 2.1282 - 2.0798 0.38 1222 35 0.2707 0.2968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.34320 REMARK 3 B22 (A**2) : 2.18360 REMARK 3 B33 (A**2) : -8.52680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.00730 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5840 REMARK 3 ANGLE : 0.526 7930 REMARK 3 CHIRALITY : 0.033 922 REMARK 3 PLANARITY : 0.010 984 REMARK 3 DIHEDRAL : 11.647 2218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0327 1.5581 39.3619 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2022 REMARK 3 T33: 0.2473 T12: -0.0084 REMARK 3 T13: 0.0173 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.1367 L22: 3.6391 REMARK 3 L33: 2.8848 L12: -0.7131 REMARK 3 L13: 1.0743 L23: -0.9071 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0823 S13: 0.2508 REMARK 3 S21: -0.0083 S22: -0.0357 S23: 0.0432 REMARK 3 S31: -0.3442 S32: -0.0246 S33: 0.0784 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8362 -20.6908 40.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.2032 REMARK 3 T33: 0.2231 T12: 0.0198 REMARK 3 T13: 0.0549 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.5509 L22: 2.1456 REMARK 3 L33: 3.4738 L12: 0.0024 REMARK 3 L13: 1.8507 L23: -0.1145 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: -0.2131 S13: -0.1483 REMARK 3 S21: 0.0091 S22: -0.0302 S23: 0.0359 REMARK 3 S31: 0.3456 S32: -0.1284 S33: -0.0518 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 1:252 OR RESID 474:492) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5054 -17.3055 9.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.2925 REMARK 3 T33: 0.2405 T12: 0.0039 REMARK 3 T13: -0.0641 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 5.5211 L22: 3.1790 REMARK 3 L33: 3.5511 L12: -1.2842 REMARK 3 L13: -0.8955 L23: -0.2564 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.1087 S13: 0.2664 REMARK 3 S21: -0.1785 S22: 0.0383 S23: 0.2429 REMARK 3 S31: -0.1351 S32: -0.5412 S33: -0.0566 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 253:473 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0064 -39.5082 11.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.7309 T22: 0.3470 REMARK 3 T33: 0.4414 T12: -0.1224 REMARK 3 T13: -0.1305 T23: 0.0628 REMARK 3 L TENSOR REMARK 3 L11: 4.6012 L22: 2.9262 REMARK 3 L33: 2.5526 L12: -0.7716 REMARK 3 L13: -0.7315 L23: 0.2822 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.0029 S13: -0.7514 REMARK 3 S21: -0.2448 S22: 0.1036 S23: 0.5202 REMARK 3 S31: 0.6766 S32: -0.4270 S33: -0.0774 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : 0.07600 REMARK 200 FOR SHELL : 1.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3TGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 5% ISO-PROPANOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.11150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 THR A 406 REMARK 465 MET A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 CYS A 410 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 GLY B 323 REMARK 465 GLY B 403 REMARK 465 ASN B 404 REMARK 465 GLU B 405 REMARK 465 THR B 406 REMARK 465 MET B 407 REMARK 465 LYS B 408 REMARK 465 GLY B 409 REMARK 465 CYS B 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 738 O HOH B 646 1.82 REMARK 500 O HOH B 658 O HOH B 667 1.92 REMARK 500 OD1 ASN B 276 OG1 THR B 278 1.94 REMARK 500 O HOH A 734 O HOH A 736 1.97 REMARK 500 OD1 ASP A 325 O HOH A 696 2.00 REMARK 500 ND2 ASN B 448 C2 NAG B 511 2.01 REMARK 500 O HOH B 620 O HOH B 627 2.03 REMARK 500 ND2 ASN B 289 C2 NAG B 505 2.04 REMARK 500 O VAL A 488 O HOH A 637 2.04 REMARK 500 ND2 ASN A 355 C2 NAG A 508 2.07 REMARK 500 ND2 ASN A 289 C2 NAG A 505 2.07 REMARK 500 O HOH A 685 O HOH A 693 2.09 REMARK 500 O THR A 430 O HOH A 749 2.10 REMARK 500 NZ LYS B 328 O HOH B 676 2.10 REMARK 500 N ASN A 232 O HOH A 724 2.10 REMARK 500 OE1 GLN B 82 O HOH B 674 2.12 REMARK 500 O HOH A 613 O HOH A 624 2.14 REMARK 500 ND2 ASN B 386 C2 NAG B 509 2.14 REMARK 500 O GLY A 429 O HOH A 749 2.16 REMARK 500 ND2 ASN A 448 C2 NAG A 511 2.17 REMARK 500 OD1 ASN A 241 O HOH A 716 2.17 REMARK 500 O HOH B 654 O HOH B 655 2.17 REMARK 500 O HOH A 676 O HOH A 686 2.18 REMARK 500 O HOH A 640 O HOH A 739 2.19 REMARK 500 ND2 ASN B 334 C2 NAG B 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 88 51.63 37.87 REMARK 500 ASP A 211 101.37 -164.56 REMARK 500 GLN A 258 -62.67 72.10 REMARK 500 GLU A 268 -109.66 -114.00 REMARK 500 ASN A 276 92.94 -175.57 REMARK 500 SER A 300 -71.82 -61.42 REMARK 500 PHE A 391 59.72 -113.42 REMARK 500 ASN A 393 67.57 -62.11 REMARK 500 CYS A 395 44.70 -80.76 REMARK 500 THR A 430 -81.19 -55.57 REMARK 500 LEU B 116 69.04 -110.50 REMARK 500 ASP B 211 102.46 -161.30 REMARK 500 GLN B 258 -59.20 61.62 REMARK 500 GLU B 268 -104.93 -132.66 REMARK 500 ASN B 355 15.15 59.58 REMARK 500 PHE B 391 53.47 -116.01 REMARK 500 ASN B 465 95.35 -53.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DVR RELATED DB: PDB REMARK 900 RELATED ID: 4DVT RELATED DB: PDB REMARK 900 RELATED ID: 4DVU RELATED DB: PDB REMARK 900 RELATED ID: 4DVV RELATED DB: PDB REMARK 900 RELATED ID: 4DVW RELATED DB: PDB REMARK 900 RELATED ID: 4DVX RELATED DB: PDB DBREF1 4DVS A 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 4DVS A A0A0M3KKW9 1 353 DBREF1 4DVS B 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 4DVS B A0A0M3KKW9 1 353 SEQADV 4DVS SER A 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQADV 4DVS SER B 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 A 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 A 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 A 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 A 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 A 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 A 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 A 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 A 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 A 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 A 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 A 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 A 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 A 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 A 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 A 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 A 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 A 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 A 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 A 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 A 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 A 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 A 353 ILE GLU SEQRES 1 B 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 B 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 B 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 B 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 B 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 B 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 B 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 B 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 B 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 B 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 B 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 B 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 B 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 B 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 B 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 B 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 B 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 B 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 B 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 B 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 B 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 B 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 B 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 B 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 B 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 B 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 B 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 B 353 ILE GLU MODRES 4DVS ASN B 276 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 234 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 392 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 355 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 392 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 448 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 334 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 234 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 262 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 334 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 295 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 241 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 295 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 355 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 386 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 448 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 386 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 262 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 241 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 276 ASN GLYCOSYLATION SITE MODRES 4DVS ASN B 289 ASN GLYCOSYLATION SITE MODRES 4DVS ASN A 289 ASN GLYCOSYLATION SITE HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET NAG A 508 14 HET NAG A 509 14 HET NAG A 510 14 HET NAG A 511 14 HET 0LY A 512 47 HET EPE A 513 15 HET NAG B 501 14 HET NAG B 502 14 HET NAG B 503 14 HET NAG B 504 14 HET NAG B 505 14 HET NAG B 506 14 HET NAG B 507 14 HET NAG B 508 14 HET NAG B 509 14 HET NAG B 510 14 HET NAG B 511 14 HET 0LY B 512 47 HET EPE B 513 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 0LY N-(4-BROMOPHENYL)-N'-(2,2,6,6-TETRAMETHYLPIPERIDIN-4- HETNAM 2 0LY YL)ETHANEDIAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 0LY NBD-557 HETSYN EPE HEPES FORMUL 3 NAG 22(C8 H15 N O6) FORMUL 14 0LY 2(C17 H24 BR N3 O2) FORMUL 15 EPE 2(C8 H18 N2 O4 S) FORMUL 29 HOH *241(H2 O) HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 98 LEU A 116 1 19 HELIX 3 3 GLY A 335 PHE A 353 1 19 HELIX 4 4 ASP A 368 MET A 373 1 6 HELIX 5 5 ASN A 474 TYR A 484 1 11 HELIX 6 6 GLU B 64 ALA B 73 1 10 HELIX 7 7 ASN B 98 LEU B 116 1 19 HELIX 8 8 GLY B 335 GLU B 351 1 17 HELIX 9 9 ASP B 368 MET B 373 1 6 HELIX 10 10 ASN B 392 ILE B 396 5 5 HELIX 11 11 ILE B 475 TYR B 484 1 10 SHEET 1 A 5 TRP A 45 ASP A 47 0 SHEET 2 A 5 TYR A 486 ILE A 491 -1 O GLN A 490 N LYS A 46 SHEET 3 A 5 TYR A 223 CYS A 228 -1 N LEU A 226 O LYS A 487 SHEET 4 A 5 VAL A 242 VAL A 245 -1 O SER A 243 N LYS A 227 SHEET 5 A 5 ILE A 84 HIS A 85 -1 N ILE A 84 O SER A 244 SHEET 1 B 3 VAL A 75 PRO A 76 0 SHEET 2 B 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 B 3 HIS A 216 CYS A 218 -1 O HIS A 216 N ALA A 55 SHEET 1 C 2 GLU A 91 ASN A 94 0 SHEET 2 C 2 THR A 236 CYS A 239 -1 O GLY A 237 N PHE A 93 SHEET 1 D 4 SER A 199 LYS A 202 0 SHEET 2 D 4 VAL A 120 THR A 123 -1 N LYS A 121 O ILE A 201 SHEET 3 D 4 GLN A 432 MET A 434 -1 O GLN A 432 N LEU A 122 SHEET 4 D 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 E 5 LEU A 259 LEU A 261 0 SHEET 2 E 5 ILE A 443 ARG A 456 -1 O GLY A 451 N LEU A 260 SHEET 3 E 5 ILE A 284 ARG A 298 -1 N VAL A 286 O ILE A 452 SHEET 4 E 5 ASN A 465 PRO A 470 0 SHEET 5 E 5 THR A 358 PHE A 361 1 N ILE A 360 O PHE A 468 SHEET 1 F 7 ILE A 271 ARG A 273 0 SHEET 2 F 7 ILE A 284 ARG A 298 -1 O HIS A 287 N ILE A 271 SHEET 3 F 7 ILE A 443 ARG A 456 -1 O ILE A 452 N VAL A 286 SHEET 4 F 7 LYS A 328 ASN A 334 0 SHEET 5 F 7 THR A 413 ILE A 420 -1 O LEU A 416 N CYS A 331 SHEET 6 F 7 GLU A 381 CYS A 385 -1 N TYR A 384 O LYS A 419 SHEET 7 F 7 HIS A 374 CYS A 378 -1 N PHE A 376 O PHE A 383 SHEET 1 G 5 TRP B 45 ASP B 47 0 SHEET 2 G 5 TYR B 486 ILE B 491 -1 O GLN B 490 N LYS B 46 SHEET 3 G 5 TYR B 223 CYS B 228 -1 N LEU B 226 O LYS B 487 SHEET 4 G 5 VAL B 242 VAL B 245 -1 O SER B 243 N LYS B 227 SHEET 5 G 5 ILE B 84 HIS B 85 -1 N ILE B 84 O SER B 244 SHEET 1 H 3 CYS B 74 PRO B 76 0 SHEET 2 H 3 PHE B 53 SER B 56 1 N CYS B 54 O VAL B 75 SHEET 3 H 3 HIS B 216 CYS B 218 -1 O HIS B 216 N ALA B 55 SHEET 1 I 2 GLU B 91 ASN B 94 0 SHEET 2 I 2 THR B 236 CYS B 239 -1 O GLY B 237 N PHE B 93 SHEET 1 J 4 SER B 199 LYS B 202 0 SHEET 2 J 4 VAL B 120 THR B 123 -1 N LYS B 121 O ILE B 201 SHEET 3 J 4 GLY B 431 MET B 434 -1 O MET B 434 N VAL B 120 SHEET 4 J 4 ILE B 423 ASN B 425 -1 N ILE B 424 O ALA B 433 SHEET 1 K 5 LEU B 259 LEU B 261 0 SHEET 2 K 5 ILE B 443 ARG B 456 -1 O GLY B 451 N LEU B 260 SHEET 3 K 5 ILE B 284 ARG B 298 -1 N VAL B 286 O ILE B 452 SHEET 4 K 5 GLU B 466 PRO B 470 0 SHEET 5 K 5 ILE B 359 PHE B 361 1 N ILE B 360 O PHE B 468 SHEET 1 L 7 ILE B 271 ARG B 273 0 SHEET 2 L 7 ILE B 284 ARG B 298 -1 O HIS B 287 N ILE B 271 SHEET 3 L 7 ILE B 443 ARG B 456 -1 O ILE B 452 N VAL B 286 SHEET 4 L 7 LYS B 328 ASN B 334 0 SHEET 5 L 7 THR B 413 ILE B 420 -1 O LEU B 416 N CYS B 331 SHEET 6 L 7 GLU B 381 CYS B 385 -1 N TYR B 384 O LYS B 419 SHEET 7 L 7 HIS B 374 CYS B 378 -1 N CYS B 378 O GLU B 381 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 6 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 8 CYS B 54 CYS B 74 1555 1555 2.03 SSBOND 9 CYS B 119 CYS B 205 1555 1555 2.03 SSBOND 10 CYS B 218 CYS B 247 1555 1555 2.03 SSBOND 11 CYS B 228 CYS B 239 1555 1555 2.03 SSBOND 12 CYS B 296 CYS B 331 1555 1555 2.03 SSBOND 13 CYS B 378 CYS B 445 1555 1555 2.03 SSBOND 14 CYS B 385 CYS B 418 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 295 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN A 334 C1 NAG A 507 1555 1555 1.44 LINK ND2 ASN A 355 C1 NAG A 508 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 509 1555 1555 1.44 LINK ND2 ASN A 392 C1 NAG A 510 1555 1555 1.44 LINK ND2 ASN A 448 C1 NAG A 511 1555 1555 1.44 LINK ND2 ASN B 234 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 241 C1 NAG B 502 1555 1555 1.44 LINK ND2 ASN B 262 C1 NAG B 503 1555 1555 1.44 LINK ND2 ASN B 276 C1 NAG B 504 1555 1555 1.37 LINK ND2 ASN B 289 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN B 295 C1 NAG B 506 1555 1555 1.44 LINK ND2 ASN B 334 C1 NAG B 507 1555 1555 1.44 LINK ND2 ASN B 355 C1 NAG B 508 1555 1555 1.44 LINK ND2 ASN B 386 C1 NAG B 509 1555 1555 1.44 LINK ND2 ASN B 392 C1 NAG B 510 1555 1555 1.44 LINK ND2 ASN B 448 C1 NAG B 511 1555 1555 1.44 CRYST1 64.644 68.223 94.021 90.00 91.48 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015469 0.000000 0.000400 0.00000 SCALE2 0.000000 0.014658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010639 0.00000