HEADER ONCOPROTEIN 23-FEB-12 4DVY TITLE CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI CAGA ONCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXICITY-ASSOCIATED IMMUNODOMINANT ANTIGEN; COMPND 3 CHAIN: P; COMPND 4 FRAGMENT: UNP RESIDUES 1-876; COMPND 5 SYNONYM: CAGA, CAG PATHOGENICITY ISLAND PROTEIN 26; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: CAGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HAYASHI,M.SENDA,H.MOROHASHI,H.HIGASHI,M.HORIO,Y.KASHIBA,L.NAGASE, AUTHOR 2 D.SASAYA,T.SHIMIZU,N.VENUGOPALAN,H.KUMETA,N.NODA,F.INAGAKI,T.SENDA, AUTHOR 3 M.HATAKEYAMA REVDAT 3 08-NOV-23 4DVY 1 SEQADV REVDAT 2 22-AUG-12 4DVY 1 DBREF SEQRES JRNL REVDAT 1 25-JUL-12 4DVY 0 JRNL AUTH T.HAYASHI,M.SENDA,H.MOROHASHI,H.HIGASHI,M.HORIO,Y.KASHIBA, JRNL AUTH 2 L.NAGASE,D.SASAYA,T.SHIMIZU,N.VENUGOPALAN,H.KUMETA,N.N.NODA, JRNL AUTH 3 F.INAGAKI,T.SENDA,M.HATAKEYAMA JRNL TITL TERTIARY STRUCTURE-FUNCTION ANALYSIS REVEALS THE PATHOGENIC JRNL TITL 2 SIGNALING POTENTIATION MECHANISM OF HELICOBACTER PYLORI JRNL TITL 3 ONCOGENIC EFFECTOR CAGA JRNL REF CELL HOST MICROBE V. 12 20 2012 JRNL REFN ISSN 1931-3128 JRNL PMID 22817985 JRNL DOI 10.1016/J.CHOM.2012.05.010 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2926 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2272 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2769 REMARK 3 BIN R VALUE (WORKING SET) : 0.2241 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.97820 REMARK 3 B22 (A**2) : 2.97820 REMARK 3 B33 (A**2) : -5.95640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.958 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.432 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5297 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7091 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1978 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 190 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 728 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5297 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 681 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6151 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.92 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { P|24 - P|221 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.6729 60.9234 -5.4883 REMARK 3 T TENSOR REMARK 3 T11: -0.1016 T22: -0.3040 REMARK 3 T33: 0.2688 T12: 0.1520 REMARK 3 T13: -0.1086 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 1.5144 L22: 4.3415 REMARK 3 L33: 0.2106 L12: -2.2312 REMARK 3 L13: -1.7628 L23: 1.9612 REMARK 3 S TENSOR REMARK 3 S11: 0.2271 S12: -0.3973 S13: 0.5442 REMARK 3 S21: -0.0920 S22: 0.0900 S23: 0.4001 REMARK 3 S31: -0.5442 S32: -0.0619 S33: -0.3171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { P|303 - P|648 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.1773 20.4527 -23.7424 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.0996 REMARK 3 T33: -0.3040 T12: 0.0488 REMARK 3 T13: 0.0961 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.5540 L22: 2.6648 REMARK 3 L33: 3.8706 L12: 1.5466 REMARK 3 L13: 2.9104 L23: 1.6369 REMARK 3 S TENSOR REMARK 3 S11: 0.1487 S12: -0.4840 S13: -0.2207 REMARK 3 S21: 0.1935 S22: -0.1135 S23: 0.1149 REMARK 3 S31: 0.4214 S32: -0.3522 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { P|649 - P|824 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.7897 41.9101 -47.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: -0.0701 REMARK 3 T33: -0.3040 T12: -0.1359 REMARK 3 T13: -0.1504 T23: -0.0965 REMARK 3 L TENSOR REMARK 3 L11: 1.5397 L22: 1.2523 REMARK 3 L33: 0.7453 L12: -0.0091 REMARK 3 L13: 0.0486 L23: -0.9627 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: -0.0624 S13: 0.2599 REMARK 3 S21: 0.5442 S22: -0.0954 S23: -0.0884 REMARK 3 S31: -0.5442 S32: 0.0163 S33: 0.1908 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18403 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 90.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DVZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% ETOH, 50MM TRIS-HCL, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.37850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.65350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.65350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.18925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.65350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.65350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.56775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.65350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.65350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.18925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.65350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.65350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 183.56775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.37850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET P 1 REMARK 465 THR P 2 REMARK 465 ASN P 3 REMARK 465 GLU P 4 REMARK 465 THR P 5 REMARK 465 ILE P 6 REMARK 465 ASP P 7 REMARK 465 GLN P 8 REMARK 465 THR P 9 REMARK 465 ARG P 10 REMARK 465 THR P 11 REMARK 465 PRO P 12 REMARK 465 ASP P 13 REMARK 465 GLN P 14 REMARK 465 THR P 15 REMARK 465 GLN P 16 REMARK 465 SER P 17 REMARK 465 GLN P 18 REMARK 465 THR P 19 REMARK 465 ALA P 20 REMARK 465 PHE P 21 REMARK 465 ASP P 22 REMARK 465 PRO P 23 REMARK 465 ASN P 222 REMARK 465 LYS P 223 REMARK 465 LYS P 224 REMARK 465 GLN P 225 REMARK 465 SER P 226 REMARK 465 SER P 227 REMARK 465 ASP P 228 REMARK 465 VAL P 229 REMARK 465 LYS P 230 REMARK 465 GLU P 231 REMARK 465 ALA P 232 REMARK 465 ILE P 233 REMARK 465 ASN P 234 REMARK 465 GLN P 235 REMARK 465 GLU P 236 REMARK 465 PRO P 237 REMARK 465 VAL P 238 REMARK 465 PRO P 239 REMARK 465 HIS P 240 REMARK 465 VAL P 241 REMARK 465 GLN P 242 REMARK 465 PRO P 243 REMARK 465 ASP P 244 REMARK 465 ILE P 245 REMARK 465 ALA P 246 REMARK 465 THR P 247 REMARK 465 THR P 248 REMARK 465 THR P 249 REMARK 465 THR P 250 REMARK 465 ASP P 251 REMARK 465 ILE P 252 REMARK 465 GLN P 253 REMARK 465 GLY P 254 REMARK 465 LEU P 255 REMARK 465 PRO P 256 REMARK 465 PRO P 257 REMARK 465 GLU P 258 REMARK 465 ALA P 259 REMARK 465 ARG P 260 REMARK 465 ASP P 261 REMARK 465 LEU P 262 REMARK 465 LEU P 263 REMARK 465 ASP P 264 REMARK 465 GLU P 265 REMARK 465 ARG P 266 REMARK 465 GLY P 267 REMARK 465 ASN P 268 REMARK 465 PHE P 269 REMARK 465 SER P 270 REMARK 465 LYS P 271 REMARK 465 PHE P 272 REMARK 465 THR P 273 REMARK 465 MET P 274 REMARK 465 GLY P 275 REMARK 465 ASP P 276 REMARK 465 MET P 277 REMARK 465 GLU P 278 REMARK 465 MET P 279 REMARK 465 LEU P 280 REMARK 465 ASP P 281 REMARK 465 VAL P 282 REMARK 465 GLU P 283 REMARK 465 GLY P 284 REMARK 465 VAL P 285 REMARK 465 ALA P 286 REMARK 465 ASP P 287 REMARK 465 ILE P 288 REMARK 465 ASP P 289 REMARK 465 PRO P 290 REMARK 465 ASN P 291 REMARK 465 TYR P 292 REMARK 465 LYS P 293 REMARK 465 PHE P 294 REMARK 465 ASN P 295 REMARK 465 GLN P 296 REMARK 465 LEU P 297 REMARK 465 LEU P 298 REMARK 465 ILE P 299 REMARK 465 HIS P 300 REMARK 465 ASN P 301 REMARK 465 ASN P 302 REMARK 465 GLU P 316 REMARK 465 PRO P 317 REMARK 465 ASP P 344 REMARK 465 GLN P 345 REMARK 465 GLN P 346 REMARK 465 GLY P 347 REMARK 465 ASN P 348 REMARK 465 GLY P 479 REMARK 465 LYS P 480 REMARK 465 LYS P 481 REMARK 465 ALA P 482 REMARK 465 ASP P 483 REMARK 465 LYS P 484 REMARK 465 ALA P 485 REMARK 465 LEU P 486 REMARK 465 ASP P 487 REMARK 465 ARG P 488 REMARK 465 GLU P 489 REMARK 465 LYS P 490 REMARK 465 ASN P 510 REMARK 465 PHE P 511 REMARK 465 LYS P 512 REMARK 465 TYR P 513 REMARK 465 THR P 514 REMARK 465 ASN P 515 REMARK 465 ALA P 516 REMARK 465 SER P 517 REMARK 465 LYS P 518 REMARK 465 ASN P 519 REMARK 465 PRO P 520 REMARK 465 ASN P 521 REMARK 465 LYS P 522 REMARK 465 GLY P 523 REMARK 465 VAL P 524 REMARK 465 GLY P 525 REMARK 465 ALA P 526 REMARK 465 THR P 527 REMARK 465 ASN P 528 REMARK 465 GLY P 529 REMARK 465 VAL P 530 REMARK 465 SER P 531 REMARK 465 HIS P 532 REMARK 465 LEU P 533 REMARK 465 GLU P 534 REMARK 465 ALA P 535 REMARK 465 GLY P 536 REMARK 465 GLY P 642 REMARK 465 ASN P 643 REMARK 465 LYS P 644 REMARK 465 ASN P 711 REMARK 465 GLY P 712 REMARK 465 LYS P 713 REMARK 465 ASN P 714 REMARK 465 LYS P 715 REMARK 465 ASP P 716 REMARK 465 PHE P 717 REMARK 465 SER P 718 REMARK 465 LYS P 719 REMARK 465 ALA P 720 REMARK 465 GLY P 757 REMARK 465 LYS P 758 REMARK 465 ASN P 759 REMARK 465 LYS P 760 REMARK 465 ASP P 761 REMARK 465 GLN P 825 REMARK 465 GLN P 826 REMARK 465 ALA P 827 REMARK 465 GLN P 828 REMARK 465 LYS P 829 REMARK 465 ASN P 830 REMARK 465 GLU P 831 REMARK 465 ASP P 832 REMARK 465 PHE P 833 REMARK 465 ASN P 834 REMARK 465 THR P 835 REMARK 465 GLY P 836 REMARK 465 LYS P 837 REMARK 465 ASN P 838 REMARK 465 SER P 839 REMARK 465 GLU P 840 REMARK 465 LEU P 841 REMARK 465 TYR P 842 REMARK 465 GLN P 843 REMARK 465 SER P 844 REMARK 465 VAL P 845 REMARK 465 LYS P 846 REMARK 465 ASN P 847 REMARK 465 SER P 848 REMARK 465 VAL P 849 REMARK 465 ASN P 850 REMARK 465 LYS P 851 REMARK 465 THR P 852 REMARK 465 LEU P 853 REMARK 465 VAL P 854 REMARK 465 GLY P 855 REMARK 465 ASN P 856 REMARK 465 GLY P 857 REMARK 465 LEU P 858 REMARK 465 SER P 859 REMARK 465 GLY P 860 REMARK 465 ILE P 861 REMARK 465 GLU P 862 REMARK 465 ALA P 863 REMARK 465 THR P 864 REMARK 465 ALA P 865 REMARK 465 LEU P 866 REMARK 465 ALA P 867 REMARK 465 LYS P 868 REMARK 465 ASN P 869 REMARK 465 PHE P 870 REMARK 465 SER P 871 REMARK 465 ASP P 872 REMARK 465 ILE P 873 REMARK 465 LYS P 874 REMARK 465 LYS P 875 REMARK 465 GLU P 876 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP P 38 -32.73 -39.23 REMARK 500 ILE P 99 0.05 -68.87 REMARK 500 ASN P 103 74.56 58.11 REMARK 500 ASP P 106 80.08 -67.88 REMARK 500 SER P 113 35.58 -86.28 REMARK 500 PHE P 114 -50.93 -124.46 REMARK 500 GLN P 115 -95.61 -71.30 REMARK 500 ASP P 119 -156.32 -107.94 REMARK 500 GLN P 152 95.99 -165.50 REMARK 500 PRO P 154 -79.41 -77.95 REMARK 500 PHE P 191 48.89 -84.63 REMARK 500 LEU P 304 3.89 -158.70 REMARK 500 SER P 311 76.79 -112.13 REMARK 500 LYS P 333 44.63 -105.12 REMARK 500 ASN P 375 68.37 62.85 REMARK 500 ASN P 411 -151.15 -104.94 REMARK 500 THR P 413 43.24 73.52 REMARK 500 ASN P 468 53.80 72.05 REMARK 500 LEU P 570 150.41 156.93 REMARK 500 MET P 647 -81.59 -78.40 REMARK 500 GLU P 648 43.88 -97.54 REMARK 500 PHE P 709 57.19 -96.04 REMARK 500 PHE P 754 56.07 -93.27 REMARK 500 LYS P 755 -23.07 -144.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DVZ RELATED DB: PDB DBREF 4DVY P 1 876 UNP P55980 CAGA_HELPY 1 876 SEQADV 4DVY MET P 131 UNP P55980 HIS 131 ENGINEERED MUTATION SEQADV 4DVY MET P 274 UNP P55980 LEU 274 ENGINEERED MUTATION SEQRES 1 P 876 MET THR ASN GLU THR ILE ASP GLN THR ARG THR PRO ASP SEQRES 2 P 876 GLN THR GLN SER GLN THR ALA PHE ASP PRO GLN GLN PHE SEQRES 3 P 876 ILE ASN ASN LEU GLN VAL ALA PHE ILE LYS VAL ASP ASN SEQRES 4 P 876 VAL VAL ALA SER PHE ASP PRO ASP GLN LYS PRO ILE VAL SEQRES 5 P 876 ASP LYS ASN ASP ARG ASP ASN ARG GLN ALA PHE ASP GLY SEQRES 6 P 876 ILE SER GLN LEU ARG GLU GLU TYR SER ASN LYS ALA ILE SEQRES 7 P 876 LYS ASN PRO THR LYS LYS ASN GLN TYR PHE SER ASP PHE SEQRES 8 P 876 ILE ASP LYS SER ASN ASP LEU ILE ASN LYS ASP ASN LEU SEQRES 9 P 876 ILE ASP VAL GLU SER SER THR LYS SER PHE GLN LYS PHE SEQRES 10 P 876 GLY ASP GLN ARG TYR GLN ILE PHE THR SER TRP VAL SER SEQRES 11 P 876 MET GLN LYS ASP PRO SER LYS ILE ASN THR ARG SER ILE SEQRES 12 P 876 ARG ASN PHE MET GLU ASN ILE ILE GLN PRO PRO ILE PRO SEQRES 13 P 876 ASP ASP LYS GLU LYS ALA GLU PHE LEU LYS SER ALA LYS SEQRES 14 P 876 GLN SER PHE ALA GLY ILE ILE ILE GLY ASN GLN ILE ARG SEQRES 15 P 876 THR ASP GLN LYS PHE MET GLY VAL PHE ASP GLU SER LEU SEQRES 16 P 876 LYS GLU ARG GLN GLU ALA GLU LYS ASN GLY GLY PRO THR SEQRES 17 P 876 GLY GLY ASP TRP LEU ASP ILE PHE LEU SER PHE ILE PHE SEQRES 18 P 876 ASN LYS LYS GLN SER SER ASP VAL LYS GLU ALA ILE ASN SEQRES 19 P 876 GLN GLU PRO VAL PRO HIS VAL GLN PRO ASP ILE ALA THR SEQRES 20 P 876 THR THR THR ASP ILE GLN GLY LEU PRO PRO GLU ALA ARG SEQRES 21 P 876 ASP LEU LEU ASP GLU ARG GLY ASN PHE SER LYS PHE THR SEQRES 22 P 876 MET GLY ASP MET GLU MET LEU ASP VAL GLU GLY VAL ALA SEQRES 23 P 876 ASP ILE ASP PRO ASN TYR LYS PHE ASN GLN LEU LEU ILE SEQRES 24 P 876 HIS ASN ASN ALA LEU SER SER VAL LEU MET GLY SER HIS SEQRES 25 P 876 ASN GLY ILE GLU PRO GLU LYS VAL SER LEU LEU TYR ALA SEQRES 26 P 876 GLY ASN GLY GLY PHE GLY ASP LYS HIS ASP TRP ASN ALA SEQRES 27 P 876 THR VAL GLY TYR LYS ASP GLN GLN GLY ASN ASN VAL ALA SEQRES 28 P 876 THR LEU ILE ASN VAL HIS MET LYS ASN GLY SER GLY LEU SEQRES 29 P 876 VAL ILE ALA GLY GLY GLU LYS GLY ILE ASN ASN PRO SER SEQRES 30 P 876 PHE TYR LEU TYR LYS GLU ASP GLN LEU THR GLY SER GLN SEQRES 31 P 876 ARG ALA LEU SER GLN GLU GLU ILE ARG ASN LYS VAL ASP SEQRES 32 P 876 PHE MET GLU PHE LEU ALA GLN ASN ASN THR LYS LEU ASP SEQRES 33 P 876 ASN LEU SER GLU LYS GLU LYS GLU LYS PHE GLN ASN GLU SEQRES 34 P 876 ILE GLU ASP PHE GLN LYS ASP SER LYS ALA TYR LEU ASP SEQRES 35 P 876 ALA LEU GLY ASN ASP ARG ILE ALA PHE VAL SER LYS LYS SEQRES 36 P 876 ASP THR LYS HIS SER ALA LEU ILE THR GLU PHE ASN ASN SEQRES 37 P 876 GLY ASP LEU SER TYR THR LEU LYS ASP TYR GLY LYS LYS SEQRES 38 P 876 ALA ASP LYS ALA LEU ASP ARG GLU LYS ASN VAL THR LEU SEQRES 39 P 876 GLN GLY SER LEU LYS HIS ASP GLY VAL MET PHE VAL ASP SEQRES 40 P 876 TYR SER ASN PHE LYS TYR THR ASN ALA SER LYS ASN PRO SEQRES 41 P 876 ASN LYS GLY VAL GLY ALA THR ASN GLY VAL SER HIS LEU SEQRES 42 P 876 GLU ALA GLY PHE ASN LYS VAL ALA VAL PHE ASN LEU PRO SEQRES 43 P 876 ASP LEU ASN ASN LEU ALA ILE THR SER PHE VAL ARG ARG SEQRES 44 P 876 ASN LEU GLU ASN LYS LEU THR ALA LYS GLY LEU SER LEU SEQRES 45 P 876 GLN GLU ALA ASN LYS LEU ILE LYS ASP PHE LEU SER SER SEQRES 46 P 876 ASN LYS GLU LEU ALA GLY LYS ALA LEU ASN PHE ASN LYS SEQRES 47 P 876 ALA VAL ALA GLU ALA LYS SER THR GLY ASN TYR ASP GLU SEQRES 48 P 876 VAL LYS LYS ALA GLN LYS ASP LEU GLU LYS SER LEU ARG SEQRES 49 P 876 LYS ARG GLU HIS LEU GLU LYS GLU VAL GLU LYS LYS LEU SEQRES 50 P 876 GLU SER LYS SER GLY ASN LYS ASN LYS MET GLU ALA LYS SEQRES 51 P 876 ALA GLN ALA ASN SER GLN LYS ASP GLU ILE PHE ALA LEU SEQRES 52 P 876 ILE ASN LYS GLU ALA ASN ARG ASP ALA ARG ALA ILE ALA SEQRES 53 P 876 TYR THR GLN ASN LEU LYS GLY ILE LYS ARG GLU LEU SER SEQRES 54 P 876 ASP LYS LEU GLU LYS ILE SER LYS ASP LEU LYS ASP PHE SEQRES 55 P 876 SER LYS SER PHE ASP GLU PHE LYS ASN GLY LYS ASN LYS SEQRES 56 P 876 ASP PHE SER LYS ALA GLU GLU THR LEU LYS ALA LEU LYS SEQRES 57 P 876 GLY SER VAL LYS ASP LEU GLY ILE ASN PRO GLU TRP ILE SEQRES 58 P 876 SER LYS VAL GLU ASN LEU ASN ALA ALA LEU ASN GLU PHE SEQRES 59 P 876 LYS ASN GLY LYS ASN LYS ASP PHE SER LYS VAL THR GLN SEQRES 60 P 876 ALA LYS SER ASP LEU GLU ASN SER VAL LYS ASP VAL ILE SEQRES 61 P 876 ILE ASN GLN LYS VAL THR ASP LYS VAL ASP ASN LEU ASN SEQRES 62 P 876 GLN ALA VAL SER VAL ALA LYS ALA MET GLY ASP PHE SER SEQRES 63 P 876 ARG VAL GLU GLN VAL LEU ALA ASP LEU LYS ASN PHE SER SEQRES 64 P 876 LYS GLU GLN LEU ALA GLN GLN ALA GLN LYS ASN GLU ASP SEQRES 65 P 876 PHE ASN THR GLY LYS ASN SER GLU LEU TYR GLN SER VAL SEQRES 66 P 876 LYS ASN SER VAL ASN LYS THR LEU VAL GLY ASN GLY LEU SEQRES 67 P 876 SER GLY ILE GLU ALA THR ALA LEU ALA LYS ASN PHE SER SEQRES 68 P 876 ASP ILE LYS LYS GLU HELIX 1 1 GLN P 24 ASP P 45 1 22 HELIX 2 2 GLN P 48 ASN P 80 1 33 HELIX 3 3 LYS P 83 ASP P 102 1 20 HELIX 4 4 ASP P 106 SER P 113 1 8 HELIX 5 5 ARG P 121 GLN P 132 1 12 HELIX 6 6 ASP P 134 ILE P 138 5 5 HELIX 7 7 ASN P 139 MET P 147 1 9 HELIX 8 8 ASP P 157 ASP P 184 1 28 HELIX 9 9 ASP P 184 PHE P 191 1 8 HELIX 10 10 PHE P 191 ASN P 204 1 14 HELIX 11 11 ASP P 211 PHE P 219 1 9 HELIX 12 12 ASN P 375 TYR P 379 5 5 HELIX 13 13 SER P 394 ASN P 411 1 18 HELIX 14 14 SER P 419 PHE P 426 1 8 HELIX 15 15 PHE P 426 ASP P 436 1 11 HELIX 16 16 SER P 437 ASP P 447 1 11 HELIX 17 17 SER P 555 LYS P 568 1 14 HELIX 18 18 SER P 571 GLY P 607 1 37 HELIX 19 19 TYR P 609 LYS P 640 1 32 HELIX 20 20 GLU P 648 PHE P 709 1 62 HELIX 21 21 GLU P 722 LEU P 734 1 13 HELIX 22 22 ASN P 737 PHE P 754 1 18 HELIX 23 23 SER P 763 GLY P 803 1 41 HELIX 24 24 PHE P 805 GLN P 822 1 18 SHEET 1 A11 MET P 309 ASN P 313 0 SHEET 2 A11 VAL P 320 ALA P 325 -1 O LEU P 322 N HIS P 312 SHEET 3 A11 TRP P 336 TYR P 342 -1 O ALA P 338 N LEU P 323 SHEET 4 A11 ALA P 351 MET P 358 -1 O THR P 352 N GLY P 341 SHEET 5 A11 GLY P 363 ALA P 367 -1 O LEU P 364 N VAL P 356 SHEET 6 A11 ARG P 448 VAL P 452 -1 O ALA P 450 N VAL P 365 SHEET 7 A11 SER P 460 ASN P 467 -1 O THR P 464 N PHE P 451 SHEET 8 A11 LEU P 471 ASP P 477 -1 O LYS P 476 N ALA P 461 SHEET 9 A11 THR P 493 GLN P 495 -1 O LEU P 494 N TYR P 473 SHEET 10 A11 VAL P 503 ASP P 507 -1 O PHE P 505 N GLN P 495 SHEET 11 A11 LYS P 539 PHE P 543 -1 O VAL P 540 N VAL P 506 SHEET 1 B 2 TYR P 381 GLU P 383 0 SHEET 2 B 2 GLN P 390 ALA P 392 -1 O ARG P 391 N LYS P 382 CRYST1 97.307 97.307 244.757 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004086 0.00000