HEADER LUMINESCENT PROTEIN 27-FEB-12 4DXM TITLE CRYSTAL STRUCTURE OF AN ANCESTRAL GFP-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEM-T KEYWDS BETA BARREL, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.KIM,R.FROMME,R.M.WACHTER REVDAT 4 06-NOV-24 4DXM 1 REMARK REVDAT 3 15-NOV-23 4DXM 1 REMARK LINK ATOM REVDAT 2 22-APR-15 4DXM 1 JRNL REVDAT 1 27-FEB-13 4DXM 0 JRNL AUTH H.KIM,T.ZOU,C.MODI,K.DORNER,T.J.GRUNKEMEYER,L.CHEN,R.FROMME, JRNL AUTH 2 M.V.MATZ,S.B.OZKAN,R.M.WACHTER JRNL TITL A HINGE MIGRATION MECHANISM UNLOCKS THE EVOLUTION OF JRNL TITL 2 GREEN-TO-RED PHOTOCONVERSION IN GFP-LIKE PROTEINS. JRNL REF STRUCTURE V. 23 34 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25565105 JRNL DOI 10.1016/J.STR.2014.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 160594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 8278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 609 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 1150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.841 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7653 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5337 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10360 ; 1.492 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13025 ; 0.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 941 ; 7.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 356 ;33.417 ;24.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1368 ;12.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;11.790 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1050 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8487 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1609 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4510 ; 1.172 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1824 ; 0.508 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7325 ; 1.874 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3143 ; 2.689 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3011 ; 4.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 12990 ; 1.253 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1150 ; 5.192 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12763 ; 2.591 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 0.35 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRIS, 0.12M MAGNESIUM SULFATE, REMARK 280 20% PEG 4000, PH 7.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 198K, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.14000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.14000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 224 REMARK 465 LYS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 MET C 1 REMARK 465 ALA C 224 REMARK 465 LYS C 225 REMARK 465 HIS C 226 REMARK 465 HIS C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 MET D 1 REMARK 465 LYS D 225 REMARK 465 HIS D 226 REMARK 465 HIS D 227 REMARK 465 HIS D 228 REMARK 465 HIS D 229 REMARK 465 HIS D 230 REMARK 465 HIS D 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN D 38 O HOH D 596 1.80 REMARK 500 O GLY D 166 O HOH D 690 1.85 REMARK 500 O HOH A 602 O HOH A 654 1.94 REMARK 500 O HOH D 604 O HOH D 705 1.96 REMARK 500 O HOH B 494 O HOH B 674 2.01 REMARK 500 N GLY A 167 O HOH A 530 2.13 REMARK 500 O HOH D 628 O HOH D 709 2.13 REMARK 500 O HOH D 479 O HOH D 705 2.15 REMARK 500 CE MET B 219 O HOH B 491 2.18 REMARK 500 OE1 GLN C 38 O HOH C 465 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 585 O HOH D 709 3445 2.02 REMARK 500 OE2 GLU D 110 O HOH C 417 3555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DXI RELATED DB: PDB REMARK 900 RELATED ID: 4DXN RELATED DB: PDB REMARK 900 RELATED ID: 4DXO RELATED DB: PDB REMARK 900 RELATED ID: 4DXP RELATED DB: PDB REMARK 900 RELATED ID: 4DXQ RELATED DB: PDB DBREF 4DXM A 1 231 PDB 4DXM 4DXM 1 231 DBREF 4DXM B 1 231 PDB 4DXM 4DXM 1 231 DBREF 4DXM C 1 231 PDB 4DXM 4DXM 1 231 DBREF 4DXM D 1 231 PDB 4DXM 4DXM 1 231 SEQRES 1 A 229 MET SER VAL ILE LYS SER ASP MET LYS ILE LYS LEU ARG SEQRES 2 A 229 MET GLU GLY THR VAL ASN GLY HIS LYS PHE VAL ILE GLU SEQRES 3 A 229 GLY GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 4 A 229 MET ASN LEU LYS VAL LYS GLU GLY ALA PRO LEU PRO PHE SEQRES 5 A 229 ALA TYR ASP ILE LEU THR THR ALA PHE CR8 ASN ARG VAL SEQRES 6 A 229 PHE THR LYS TYR PRO LYS ASP ILE PRO ASP TYR PHE LYS SEQRES 7 A 229 GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER MET SEQRES 8 A 229 THR PHE GLU ASP GLY GLY ILE CYS THR ALA THR SER ASP SEQRES 9 A 229 ILE THR LEU GLU GLY ASP CYS PHE PHE TYR GLU ILE ARG SEQRES 10 A 229 PHE ASP GLY VAL ASN PHE PRO PRO ASN GLY PRO VAL MET SEQRES 11 A 229 GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU LYS SEQRES 12 A 229 MET TYR VAL ARG ASP GLY VAL LEU MET GLY ASP VAL ASN SEQRES 13 A 229 MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG CYS SEQRES 14 A 229 ASP PHE LYS THR THR TYR LYS ALA LYS LYS GLY VAL GLN SEQRES 15 A 229 LEU PRO ASP TYR HIS PHE VAL ASP HIS ARG ILE GLU ILE SEQRES 16 A 229 LEU SER HIS ASP LYS ASP TYR ASN ASN VAL LYS LEU TYR SEQRES 17 A 229 GLU HIS ALA VAL ALA ARG TYR SER MET LEU PRO ARG GLN SEQRES 18 A 229 ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 MET SER VAL ILE LYS SER ASP MET LYS ILE LYS LEU ARG SEQRES 2 B 229 MET GLU GLY THR VAL ASN GLY HIS LYS PHE VAL ILE GLU SEQRES 3 B 229 GLY GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 4 B 229 MET ASN LEU LYS VAL LYS GLU GLY ALA PRO LEU PRO PHE SEQRES 5 B 229 ALA TYR ASP ILE LEU THR THR ALA PHE CR8 ASN ARG VAL SEQRES 6 B 229 PHE THR LYS TYR PRO LYS ASP ILE PRO ASP TYR PHE LYS SEQRES 7 B 229 GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER MET SEQRES 8 B 229 THR PHE GLU ASP GLY GLY ILE CYS THR ALA THR SER ASP SEQRES 9 B 229 ILE THR LEU GLU GLY ASP CYS PHE PHE TYR GLU ILE ARG SEQRES 10 B 229 PHE ASP GLY VAL ASN PHE PRO PRO ASN GLY PRO VAL MET SEQRES 11 B 229 GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU LYS SEQRES 12 B 229 MET TYR VAL ARG ASP GLY VAL LEU MET GLY ASP VAL ASN SEQRES 13 B 229 MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG CYS SEQRES 14 B 229 ASP PHE LYS THR THR TYR LYS ALA LYS LYS GLY VAL GLN SEQRES 15 B 229 LEU PRO ASP TYR HIS PHE VAL ASP HIS ARG ILE GLU ILE SEQRES 16 B 229 LEU SER HIS ASP LYS ASP TYR ASN ASN VAL LYS LEU TYR SEQRES 17 B 229 GLU HIS ALA VAL ALA ARG TYR SER MET LEU PRO ARG GLN SEQRES 18 B 229 ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 229 MET SER VAL ILE LYS SER ASP MET LYS ILE LYS LEU ARG SEQRES 2 C 229 MET GLU GLY THR VAL ASN GLY HIS LYS PHE VAL ILE GLU SEQRES 3 C 229 GLY GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 4 C 229 MET ASN LEU LYS VAL LYS GLU GLY ALA PRO LEU PRO PHE SEQRES 5 C 229 ALA TYR ASP ILE LEU THR THR ALA PHE CR8 ASN ARG VAL SEQRES 6 C 229 PHE THR LYS TYR PRO LYS ASP ILE PRO ASP TYR PHE LYS SEQRES 7 C 229 GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER MET SEQRES 8 C 229 THR PHE GLU ASP GLY GLY ILE CYS THR ALA THR SER ASP SEQRES 9 C 229 ILE THR LEU GLU GLY ASP CYS PHE PHE TYR GLU ILE ARG SEQRES 10 C 229 PHE ASP GLY VAL ASN PHE PRO PRO ASN GLY PRO VAL MET SEQRES 11 C 229 GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU LYS SEQRES 12 C 229 MET TYR VAL ARG ASP GLY VAL LEU MET GLY ASP VAL ASN SEQRES 13 C 229 MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG CYS SEQRES 14 C 229 ASP PHE LYS THR THR TYR LYS ALA LYS LYS GLY VAL GLN SEQRES 15 C 229 LEU PRO ASP TYR HIS PHE VAL ASP HIS ARG ILE GLU ILE SEQRES 16 C 229 LEU SER HIS ASP LYS ASP TYR ASN ASN VAL LYS LEU TYR SEQRES 17 C 229 GLU HIS ALA VAL ALA ARG TYR SER MET LEU PRO ARG GLN SEQRES 18 C 229 ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 229 MET SER VAL ILE LYS SER ASP MET LYS ILE LYS LEU ARG SEQRES 2 D 229 MET GLU GLY THR VAL ASN GLY HIS LYS PHE VAL ILE GLU SEQRES 3 D 229 GLY GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 4 D 229 MET ASN LEU LYS VAL LYS GLU GLY ALA PRO LEU PRO PHE SEQRES 5 D 229 ALA TYR ASP ILE LEU THR THR ALA PHE CR8 ASN ARG VAL SEQRES 6 D 229 PHE THR LYS TYR PRO LYS ASP ILE PRO ASP TYR PHE LYS SEQRES 7 D 229 GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER MET SEQRES 8 D 229 THR PHE GLU ASP GLY GLY ILE CYS THR ALA THR SER ASP SEQRES 9 D 229 ILE THR LEU GLU GLY ASP CYS PHE PHE TYR GLU ILE ARG SEQRES 10 D 229 PHE ASP GLY VAL ASN PHE PRO PRO ASN GLY PRO VAL MET SEQRES 11 D 229 GLN LYS LYS THR LEU LYS TRP GLU PRO SER THR GLU LYS SEQRES 12 D 229 MET TYR VAL ARG ASP GLY VAL LEU MET GLY ASP VAL ASN SEQRES 13 D 229 MET ALA LEU LEU LEU GLU GLY GLY GLY HIS TYR ARG CYS SEQRES 14 D 229 ASP PHE LYS THR THR TYR LYS ALA LYS LYS GLY VAL GLN SEQRES 15 D 229 LEU PRO ASP TYR HIS PHE VAL ASP HIS ARG ILE GLU ILE SEQRES 16 D 229 LEU SER HIS ASP LYS ASP TYR ASN ASN VAL LYS LEU TYR SEQRES 17 D 229 GLU HIS ALA VAL ALA ARG TYR SER MET LEU PRO ARG GLN SEQRES 18 D 229 ALA LYS HIS HIS HIS HIS HIS HIS MODRES 4DXM CR8 A 63 HIS MODRES 4DXM CR8 A 63 TYR MODRES 4DXM CR8 A 63 GLY MODRES 4DXM CR8 B 63 HIS MODRES 4DXM CR8 B 63 TYR MODRES 4DXM CR8 B 63 GLY MODRES 4DXM CR8 C 63 HIS MODRES 4DXM CR8 C 63 TYR MODRES 4DXM CR8 C 63 GLY MODRES 4DXM CR8 D 63 HIS MODRES 4DXM CR8 D 63 TYR MODRES 4DXM CR8 D 63 GLY HET CR8 A 63 25 HET CR8 B 63 25 HET CR8 C 63 25 HET CR8 D 63 25 HET SO4 A 301 5 HET SO4 B 301 5 HET SO4 D 301 5 HETNAM CR8 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1- HETNAM 2 CR8 (CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1- HETNAM 3 CR8 YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE HETNAM SO4 SULFATE ION HETSYN CR8 CHROMOPHORE (HIS-TYR-GLY) FORMUL 1 CR8 4(C17 H16 N5 O4 1-) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *1150(H2 O) HELIX 1 1 TYR A 54 THR A 59 1 6 HELIX 2 2 ASP A 77 SER A 82 1 6 HELIX 3 3 TYR B 54 THR B 59 1 6 HELIX 4 4 ASP B 77 SER B 82 1 6 HELIX 5 5 LYS B 202 TYR B 204 5 3 HELIX 6 6 TYR C 54 THR C 59 1 6 HELIX 7 7 ASP C 77 SER C 82 1 6 HELIX 8 8 TYR D 54 THR D 59 1 6 HELIX 9 9 ASP D 77 SER D 82 1 6 SHEET 1 A13 THR A 136 TRP A 139 0 SHEET 2 A13 VAL A 152 LEU A 163 -1 O LEU A 162 N LEU A 137 SHEET 3 A13 HIS A 168 ALA A 179 -1 O TYR A 177 N LEU A 153 SHEET 4 A13 TYR A 87 PHE A 95 -1 N SER A 88 O LYS A 178 SHEET 5 A13 ILE A 100 GLU A 110 -1 O ALA A 103 N ARG A 91 SHEET 6 A13 CYS A 113 VAL A 123 -1 O VAL A 123 N ILE A 100 SHEET 7 A13 MET A 8 VAL A 18 1 N ARG A 13 O ILE A 118 SHEET 8 A13 HIS A 21 LYS A 32 -1 O ILE A 25 N MET A 14 SHEET 9 A13 THR A 37 GLU A 46 -1 O ASN A 41 N GLU A 28 SHEET 10 A13 ASN A 206 ARG A 216 -1 O VAL A 207 N LEU A 42 SHEET 11 A13 HIS A 189 HIS A 200 -1 N GLU A 196 O TYR A 210 SHEET 12 A13 SER A 142 ARG A 149 -1 N GLU A 144 O VAL A 191 SHEET 13 A13 VAL A 152 LEU A 163 -1 O MET A 154 N TYR A 147 SHEET 1 B13 THR B 136 TRP B 139 0 SHEET 2 B13 VAL B 152 LEU B 163 -1 O LEU B 162 N LEU B 137 SHEET 3 B13 HIS B 168 ALA B 179 -1 O TYR B 177 N LEU B 153 SHEET 4 B13 TYR B 87 PHE B 95 -1 N SER B 88 O LYS B 178 SHEET 5 B13 ILE B 100 GLU B 110 -1 O CYS B 101 N MET B 93 SHEET 6 B13 CYS B 113 VAL B 123 -1 O VAL B 123 N ILE B 100 SHEET 7 B13 MET B 8 VAL B 18 1 N ARG B 13 O ILE B 118 SHEET 8 B13 HIS B 21 LYS B 32 -1 O ILE B 25 N MET B 14 SHEET 9 B13 THR B 37 GLU B 46 -1 O LYS B 43 N GLU B 26 SHEET 10 B13 ASN B 206 ARG B 216 -1 O VAL B 207 N LEU B 42 SHEET 11 B13 HIS B 189 HIS B 200 -1 N GLU B 196 O TYR B 210 SHEET 12 B13 SER B 142 ARG B 149 -1 N GLU B 144 O VAL B 191 SHEET 13 B13 VAL B 152 LEU B 163 -1 O MET B 154 N TYR B 147 SHEET 1 C13 THR C 136 TRP C 139 0 SHEET 2 C13 VAL C 152 LEU C 163 -1 O LEU C 162 N LEU C 137 SHEET 3 C13 HIS C 168 ALA C 179 -1 O TYR C 177 N LEU C 153 SHEET 4 C13 TYR C 87 PHE C 95 -1 N SER C 88 O LYS C 178 SHEET 5 C13 ILE C 100 GLU C 110 -1 O CYS C 101 N MET C 93 SHEET 6 C13 CYS C 113 VAL C 123 -1 O ASP C 121 N THR C 102 SHEET 7 C13 MET C 8 VAL C 18 1 N LYS C 9 O PHE C 114 SHEET 8 C13 HIS C 21 LYS C 32 -1 O ILE C 25 N MET C 14 SHEET 9 C13 THR C 37 GLU C 46 -1 O LYS C 45 N VAL C 24 SHEET 10 C13 ASN C 206 ARG C 216 -1 O VAL C 207 N LEU C 42 SHEET 11 C13 HIS C 189 HIS C 200 -1 N SER C 199 O LYS C 208 SHEET 12 C13 SER C 142 ARG C 149 -1 N MET C 146 O HIS C 189 SHEET 13 C13 VAL C 152 LEU C 163 -1 O ASP C 156 N LYS C 145 SHEET 1 D13 THR D 136 TRP D 139 0 SHEET 2 D13 VAL D 152 LEU D 163 -1 O LEU D 162 N LEU D 137 SHEET 3 D13 HIS D 168 ALA D 179 -1 O TYR D 177 N LEU D 153 SHEET 4 D13 TYR D 87 PHE D 95 -1 N SER D 88 O LYS D 178 SHEET 5 D13 ILE D 100 GLU D 110 -1 O CYS D 101 N MET D 93 SHEET 6 D13 CYS D 113 VAL D 123 -1 O VAL D 123 N ILE D 100 SHEET 7 D13 MET D 8 VAL D 18 1 N LYS D 9 O PHE D 114 SHEET 8 D13 HIS D 21 LYS D 32 -1 O ILE D 25 N MET D 14 SHEET 9 D13 THR D 37 GLU D 46 -1 O LYS D 43 N GLU D 26 SHEET 10 D13 ASN D 206 ARG D 216 -1 O VAL D 207 N LEU D 42 SHEET 11 D13 HIS D 189 HIS D 200 -1 N GLU D 196 O TYR D 210 SHEET 12 D13 SER D 142 ARG D 149 -1 N MET D 146 O HIS D 189 SHEET 13 D13 VAL D 152 LEU D 163 -1 O MET D 154 N TYR D 147 LINK C PHE A 61 N1 CR8 A 63 1555 1555 1.42 LINK C3 CR8 A 63 N ASN A 65 1555 1555 1.32 LINK C PHE B 61 N1 CR8 B 63 1555 1555 1.47 LINK C3 CR8 B 63 N ASN B 65 1555 1555 1.36 LINK C PHE C 61 N1 CR8 C 63 1555 1555 1.49 LINK C3 CR8 C 63 N ASN C 65 1555 1555 1.33 LINK C PHE D 61 N1 CR8 D 63 1555 1555 1.44 LINK C3 CR8 D 63 N ASN D 65 1555 1555 1.38 CISPEP 1 ALA A 48 PRO A 49 0 -6.47 CISPEP 2 PHE A 83 PRO A 84 0 12.22 CISPEP 3 ALA B 48 PRO B 49 0 -8.14 CISPEP 4 PHE B 83 PRO B 84 0 10.75 CISPEP 5 ALA C 48 PRO C 49 0 -6.13 CISPEP 6 PHE C 83 PRO C 84 0 12.91 CISPEP 7 ALA D 48 PRO D 49 0 -6.97 CISPEP 8 PHE D 83 PRO D 84 0 10.11 SITE 1 AC1 8 VAL A 148 ARG A 149 ASP A 150 HOH A 425 SITE 2 AC1 8 HOH A 438 HOH A 637 HOH A 646 GLY B 167 SITE 1 AC2 6 GLY A 167 ARG B 149 ASP B 150 HOH B 424 SITE 2 AC2 6 HOH B 519 HOH B 560 SITE 1 AC3 7 GLY C 167 ASP D 150 HOH D 407 HOH D 452 SITE 2 AC3 7 HOH D 600 HOH D 651 HOH D 661 CRYST1 106.280 92.710 89.060 90.00 93.18 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009409 0.000000 0.000523 0.00000 SCALE2 0.000000 0.010786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011246 0.00000