HEADER HYDROLASE 01-MAR-12 4DZH TITLE CRYSTAL STRUCTURE OF AN ADENOSINE DEAMINASE FROM XANTHOMONAS TITLE 2 CAMPESTRIS (TARGET NYSGRC-200456) WITH BOUND ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 190485; SOURCE 4 STRAIN: ATCC 33913; SOURCE 5 GENE: XCC2270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS AMIDOHYDROLASE, ADENOSINE DEAMINASE, NYSGRC, STRUCTURAL GENOMICS, NEW KEYWDS 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, TIM-BARREL STRUCTURAL KEYWDS 3 FOLD. PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,S.R.WASSERMAN,L.L.MORISCO,S.SOJITRA, AUTHOR 2 S.CHAMALA,A.KAR,J.LAFLEUR,G.VILLIGAS,B.EVANS,J.HAMMONDS,A.GIZZI, AUTHOR 3 W.D.ZENCHECK,B.HILLERICH,J.LOVE,R.D.SEIDEL,J.B.BONANNO,F.M.RAUSHEL, AUTHOR 4 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 13-SEP-23 4DZH 1 REMARK SEQADV LINK REVDAT 1 21-MAR-12 4DZH 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,S.R.WASSERMAN,L.L.MORISCO, JRNL AUTH 2 S.SOJITRA,S.CHAMALA,A.KAR,J.LAFLEUR,G.VILLIGAS,B.EVANS, JRNL AUTH 3 J.HAMMONDS,A.GIZZI,W.D.ZENCHECK,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,J.B.BONANNO,F.M.RAUSHEL,S.C.ALMO, JRNL AUTH 5 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF AN ADENOSINE DEAMINASE FROM XANTHOMONAS JRNL TITL 2 CAMPESTRIS (TARGET NYSGRC-200456) WITH BOUND ZN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 65346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.9692 - 4.4539 0.93 2513 133 0.1757 0.1814 REMARK 3 2 4.4539 - 3.5441 0.99 2618 139 0.1572 0.1645 REMARK 3 3 3.5441 - 3.0987 1.00 2653 131 0.1767 0.2055 REMARK 3 4 3.0987 - 2.8166 1.00 2587 144 0.2001 0.2039 REMARK 3 5 2.8166 - 2.6153 1.00 2636 137 0.2065 0.2524 REMARK 3 6 2.6153 - 2.4615 1.00 2577 144 0.2087 0.2221 REMARK 3 7 2.4615 - 2.3385 1.00 2598 142 0.2015 0.2446 REMARK 3 8 2.3385 - 2.2369 1.00 2607 132 0.2126 0.2510 REMARK 3 9 2.2369 - 2.1510 1.00 2608 138 0.2140 0.2532 REMARK 3 10 2.1510 - 2.0769 1.00 2595 150 0.2241 0.2432 REMARK 3 11 2.0769 - 2.0120 1.00 2564 137 0.2315 0.2739 REMARK 3 12 2.0120 - 1.9546 1.00 2576 145 0.2382 0.2828 REMARK 3 13 1.9546 - 1.9032 1.00 2585 132 0.2393 0.2548 REMARK 3 14 1.9032 - 1.8568 1.00 2579 154 0.2493 0.2785 REMARK 3 15 1.8568 - 1.8146 1.00 2610 138 0.2498 0.3161 REMARK 3 16 1.8146 - 1.7760 1.00 2588 129 0.2583 0.2944 REMARK 3 17 1.7760 - 1.7405 1.00 2563 159 0.2608 0.3100 REMARK 3 18 1.7405 - 1.7077 1.00 2551 142 0.2567 0.2793 REMARK 3 19 1.7077 - 1.6772 1.00 2597 123 0.2702 0.3040 REMARK 3 20 1.6772 - 1.6488 1.00 2609 140 0.2756 0.3418 REMARK 3 21 1.6488 - 1.6223 1.00 2591 129 0.2810 0.2931 REMARK 3 22 1.6223 - 1.5973 1.00 2560 130 0.2980 0.3288 REMARK 3 23 1.5973 - 1.5738 1.00 2591 161 0.3153 0.3418 REMARK 3 24 1.5738 - 1.5517 0.95 2476 105 0.3162 0.3679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 46.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39740 REMARK 3 B22 (A**2) : -0.26720 REMARK 3 B33 (A**2) : -0.13020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.01320 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 3519 REMARK 3 ANGLE : 1.508 4834 REMARK 3 CHIRALITY : 0.105 556 REMARK 3 PLANARITY : 0.008 635 REMARK 3 DIHEDRAL : 13.108 1258 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 9:112) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8636 21.7682 18.1936 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1798 REMARK 3 T33: -0.0297 T12: -0.1069 REMARK 3 T13: -0.0025 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 1.3874 L22: 0.4187 REMARK 3 L33: 1.1547 L12: -0.5890 REMARK 3 L13: -0.4551 L23: -0.2258 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: 0.1987 S13: 0.0285 REMARK 3 S21: -0.0446 S22: -0.0427 S23: 0.0222 REMARK 3 S31: 0.2498 S32: -0.2849 S33: 0.0578 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 113:447) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8467 32.7751 21.3040 REMARK 3 T TENSOR REMARK 3 T11: -0.0263 T22: -0.1475 REMARK 3 T33: 0.0662 T12: -0.1505 REMARK 3 T13: 0.0800 T23: 0.1304 REMARK 3 L TENSOR REMARK 3 L11: 1.5723 L22: 0.4713 REMARK 3 L33: 0.5382 L12: -0.0499 REMARK 3 L13: -0.4695 L23: 0.2066 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.2322 S13: 0.5468 REMARK 3 S21: -0.0234 S22: 0.2712 S23: -0.2791 REMARK 3 S31: 0.1488 S32: 0.1159 S33: 0.0182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65349 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : 0.52700 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3LNP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 5 MM MGCL); RESERVOIR (1.0 M SUCCINIC ACID REMARK 280 PH 7.0, 0.1 M HEPES PH 7.0, 1% PEG MME 2000); CRYOPROTECTION REMARK 280 (RESERVOIR, + 20% GLYCEROL + 10 MM ZNCL, 10 MM INOSINE), SITTING REMARK 280 DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.82250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.82250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -261.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -19.18490 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.60148 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 MET A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 448 REMARK 465 ALA A 449 REMARK 465 ALA A 450 REMARK 465 GLU A 451 REMARK 465 ASN A 452 REMARK 465 LEU A 453 REMARK 465 TYR A 454 REMARK 465 PHE A 455 REMARK 465 GLN A 456 REMARK 465 SER A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 TRP A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 PRO A 467 REMARK 465 GLN A 468 REMARK 465 PHE A 469 REMARK 465 GLU A 470 REMARK 465 LYS A 471 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 649 O HOH A 825 2.07 REMARK 500 O HOH A 644 O HOH A 715 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 315 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 315 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 406 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -44.66 75.81 REMARK 500 ALA A 46 145.29 -173.14 REMARK 500 ALA A 46 144.72 -173.14 REMARK 500 ALA A 90 71.72 -154.75 REMARK 500 HIS A 102 -63.41 -133.59 REMARK 500 HIS A 264 -75.00 92.70 REMARK 500 ASP A 315 -158.87 65.86 REMARK 500 SER A 319 54.76 -141.68 REMARK 500 ASN A 320 -63.38 -147.58 REMARK 500 ASP A 342 105.32 -161.36 REMARK 500 THR A 356 -83.02 -124.13 REMARK 500 ALA A 403 -35.26 -135.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 80 NE2 102.4 REMARK 620 3 HIS A 227 NE2 90.5 104.8 REMARK 620 4 ASP A 315 OD1 91.5 88.1 166.2 REMARK 620 5 HOH A 790 O 122.7 132.7 89.5 77.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 184 NE2 REMARK 620 2 LEU A 220 O 94.0 REMARK 620 3 HOH A 845 O 107.5 93.3 REMARK 620 4 HOH A 846 O 102.3 80.2 149.9 REMARK 620 5 HOH A 847 O 102.7 153.4 101.1 76.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 288 OE1 REMARK 620 2 ASN A 320 OD1 96.0 REMARK 620 3 ASP A 322 OD1 172.7 85.7 REMARK 620 4 HOH A 840 O 95.6 162.7 84.5 REMARK 620 5 HOH A 842 O 92.4 81.5 94.9 85.2 REMARK 620 6 HOH A 843 O 86.5 97.9 86.2 95.6 178.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 315 OD2 REMARK 620 2 ASP A 315 OD1 55.9 REMARK 620 3 UNL A 506 OXT 111.5 88.5 REMARK 620 4 HOH A 790 O 108.4 74.7 115.7 REMARK 620 5 HOH A 844 O 113.9 162.8 108.7 98.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200456 RELATED DB: TARGETTRACK DBREF 4DZH A 2 449 UNP Q8P8H1 Q8P8H1_XANCP 2 449 SEQADV 4DZH MET A 0 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH VAL A 1 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH ALA A 450 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH GLU A 451 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH ASN A 452 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH LEU A 453 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH TYR A 454 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH PHE A 455 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH GLN A 456 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH SER A 457 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 458 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 459 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 460 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 461 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 462 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 463 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH TRP A 464 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH SER A 465 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH HIS A 466 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH PRO A 467 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH GLN A 468 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH PHE A 469 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH GLU A 470 UNP Q8P8H1 EXPRESSION TAG SEQADV 4DZH LYS A 471 UNP Q8P8H1 EXPRESSION TAG SEQRES 1 A 472 MET VAL ASP PRO LEU MET THR ASN ALA PRO PRO GLU PRO SEQRES 2 A 472 CYS ASP LEU LEU ILE GLU ALA GLY TYR VAL VAL PRO ILE SEQRES 3 A 472 GLU PRO HIS ALA VAL VAL LEU GLU ASP HIS ALA VAL ALA SEQRES 4 A 472 VAL SER ASN GLY VAL ILE VAL ALA VAL LEU PRO THR ALA SEQRES 5 A 472 ASP ALA ARG VAL ARG PHE ALA PRO ALA ARG THR VAL SER SEQRES 6 A 472 ARG PRO ASP ALA ALA LEU MET PRO GLY LEU VAL ASN ALA SEQRES 7 A 472 HIS THR HIS ASN PRO MET THR LEU LEU ARG GLY VAL ALA SEQRES 8 A 472 ASP ASP LEU PRO LEU MET VAL TRP LEU GLN GLN HIS ILE SEQRES 9 A 472 TRP PRO VAL GLU ALA ALA VAL ILE GLY PRO GLU PHE VAL SEQRES 10 A 472 ALA ASP GLY THR THR LEU ALA ILE ALA GLU MET LEU ARG SEQRES 11 A 472 GLY GLY THR THR CYS VAL ASN GLU ASN TYR PHE PHE ALA SEQRES 12 A 472 ASP VAL GLN ALA ALA VAL TYR LYS GLN HIS GLY PHE ARG SEQRES 13 A 472 ALA LEU VAL GLY ALA VAL ILE ILE ASP PHE PRO THR ALA SEQRES 14 A 472 TRP ALA SER SER ASP ASP GLU TYR PHE ALA ARG ALA GLY SEQRES 15 A 472 GLU LEU HIS ASP GLN TRP ARG ASP ASP PRO LEU ILE SER SEQRES 16 A 472 THR ALA PHE ALA PRO HIS ALA PRO TYR THR VAL ASN ASP SEQRES 17 A 472 ALA ASN PHE GLU ARG VAL ARG MET LEU ALA ASP GLN LEU SEQRES 18 A 472 ASP MET PRO VAL HIS LEU HIS THR HIS GLU THR ALA GLN SEQRES 19 A 472 GLU VAL ALA ASP SER VAL ALA GLN TYR GLY GLN ARG PRO SEQRES 20 A 472 LEU ALA ARG LEU ASP ARG LEU GLY LEU VAL ASN ASP ARG SEQRES 21 A 472 LEU ILE ALA VAL HIS MET THR GLN LEU THR GLU ALA GLU SEQRES 22 A 472 ILE HIS LEU CYS ALA GLU ARG GLY VAL SER VAL VAL HIS SEQRES 23 A 472 CYS PRO GLU SER ASN LEU LYS LEU ALA SER GLY PHE CYS SEQRES 24 A 472 PRO ALA CYS ALA LEU GLN ARG ALA SER VAL ASN LEU ALA SEQRES 25 A 472 ILE GLY THR ASP GLY CYS ALA SER ASN ASN ASP LEU ASP SEQRES 26 A 472 MET PHE SER GLU ASN ARG THR ALA ALA ILE LEU ALA LYS SEQRES 27 A 472 ALA VAL ALA ASN ASP ALA THR ALA LEU ASP ALA ALA THR SEQRES 28 A 472 THR LEU ARG ALA ALA THR LEU GLY GLY ALA ARG ALA LEU SEQRES 29 A 472 GLY PHE GLY ASP ARG ILE GLY SER ILE GLU VAL GLY LYS SEQRES 30 A 472 GLN ALA ASP LEU VAL CYS VAL ASP LEU SER ALA LEU GLU SEQRES 31 A 472 THR GLN PRO LEU HIS HIS VAL LEU SER GLN LEU ILE TYR SEQRES 32 A 472 ALA ALA GLY ARG HIS GLN VAL THR ASP VAL TRP ILE ALA SEQRES 33 A 472 GLY LYS PRO LYS LEU VAL GLN ARG GLU LEU ILE ASP MET SEQRES 34 A 472 ASP THR ALA ALA LEU VAL ALA ASN ALA ARG GLN TRP ARG SEQRES 35 A 472 ASP ARG ILE ARG THR VAL ARG ALA ALA GLU ASN LEU TYR SEQRES 36 A 472 PHE GLN SER HIS HIS HIS HIS HIS HIS TRP SER HIS PRO SEQRES 37 A 472 GLN PHE GLU LYS HET MG A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET ZN A 504 1 HET ZN A 505 1 HET UNL A 506 4 HET ZN A 507 1 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM UNL UNKNOWN LIGAND HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ZN 3(ZN 2+) FORMUL 9 HOH *247(H2 O) HELIX 1 1 THR A 50 ARG A 56 1 7 HELIX 2 2 HIS A 80 ARG A 87 5 8 HELIX 3 3 PRO A 94 HIS A 102 1 9 HELIX 4 4 HIS A 102 ILE A 111 1 10 HELIX 5 5 GLY A 112 GLY A 130 1 19 HELIX 6 6 PHE A 141 HIS A 152 1 12 HELIX 7 7 SER A 172 ARG A 188 1 17 HELIX 8 8 ASN A 206 ASP A 221 1 16 HELIX 9 9 THR A 231 GLY A 243 1 13 HELIX 10 10 ARG A 245 GLY A 254 1 10 HELIX 11 11 THR A 269 GLY A 280 1 12 HELIX 12 12 CYS A 286 LEU A 293 1 8 HELIX 13 13 PRO A 299 ALA A 306 1 8 HELIX 14 14 ASP A 324 ASN A 341 1 18 HELIX 15 15 ASP A 347 THR A 356 1 10 HELIX 16 16 THR A 356 LEU A 363 1 8 HELIX 17 17 ALA A 387 GLN A 391 5 5 HELIX 18 18 HIS A 395 ALA A 403 1 9 HELIX 19 19 GLY A 405 HIS A 407 5 3 HELIX 20 20 ASP A 429 VAL A 447 1 19 SHEET 1 A 8 VAL A 43 PRO A 49 0 SHEET 2 A 8 LEU A 32 SER A 40 -1 N ALA A 36 O LEU A 48 SHEET 3 A 8 GLU A 11 VAL A 22 -1 N VAL A 22 O LEU A 32 SHEET 4 A 8 PHE A 57 PRO A 72 1 O ARG A 65 N GLU A 18 SHEET 5 A 8 LEU A 380 ASP A 384 -1 O VAL A 381 N MET A 71 SHEET 6 A 8 VAL A 409 ILE A 414 -1 O TRP A 413 N LEU A 380 SHEET 7 A 8 LYS A 417 VAL A 421 -1 O LYS A 419 N VAL A 412 SHEET 8 A 8 GLU A 424 LEU A 425 -1 O GLU A 424 N VAL A 421 SHEET 1 B 4 LEU A 74 THR A 79 0 SHEET 2 B 4 THR A 132 ASN A 138 1 O CYS A 134 N ASN A 76 SHEET 3 B 4 ARG A 155 ILE A 162 1 O LEU A 157 N VAL A 135 SHEET 4 B 4 ILE A 193 PRO A 199 1 O SER A 194 N VAL A 158 SHEET 1 C 4 VAL A 224 THR A 228 0 SHEET 2 C 4 LEU A 260 HIS A 264 1 O ILE A 261 N VAL A 224 SHEET 3 C 4 SER A 282 HIS A 285 1 O SER A 282 N ALA A 262 SHEET 4 C 4 ASN A 309 ILE A 312 1 O ALA A 311 N HIS A 285 LINK NE2 HIS A 78 ZN ZN A 504 1555 1555 2.07 LINK NE2 HIS A 80 ZN ZN A 504 1555 1555 1.98 LINK NE2 HIS A 184 ZN ZN A 507 1555 1555 2.04 LINK O LEU A 220 ZN ZN A 507 1555 1555 2.18 LINK NE2 HIS A 227 ZN ZN A 504 1555 1555 2.17 LINK OE1 GLU A 288 MG MG A 501 1555 1555 2.01 LINK OD1 ASP A 315 ZN ZN A 504 1555 1555 2.35 LINK OD2 ASP A 315 ZN ZN A 505 1555 1555 1.96 LINK OD1 ASP A 315 ZN ZN A 505 1555 1555 2.59 LINK OD1 ASN A 320 MG MG A 501 1555 1555 1.98 LINK OD1 ASP A 322 MG MG A 501 1555 1555 2.06 LINK MG MG A 501 O HOH A 840 1555 1555 2.14 LINK MG MG A 501 O HOH A 842 1555 1555 2.17 LINK MG MG A 501 O HOH A 843 1555 1555 2.05 LINK ZN ZN A 504 O HOH A 790 1555 1555 2.02 LINK ZN ZN A 505 OXT UNL A 506 1555 1555 2.03 LINK ZN ZN A 505 O HOH A 790 1555 1555 1.86 LINK ZN ZN A 505 O HOH A 844 1555 1555 2.14 LINK ZN ZN A 507 O HOH A 845 1555 1555 2.22 LINK ZN ZN A 507 O HOH A 846 1555 1555 2.16 LINK ZN ZN A 507 O HOH A 847 1555 1555 2.11 CISPEP 1 GLU A 26 PRO A 27 0 0.83 CISPEP 2 ASN A 320 ASN A 321 0 8.82 CISPEP 3 GLN A 391 PRO A 392 0 -8.77 SITE 1 AC1 6 GLU A 288 ASN A 320 ASP A 322 HOH A 840 SITE 2 AC1 6 HOH A 842 HOH A 843 SITE 1 AC2 9 ASP A 258 ARG A 259 LEU A 260 GLY A 280 SITE 2 AC2 9 SER A 282 ARG A 361 ALA A 362 HOH A 701 SITE 3 AC2 9 HOH A 787 SITE 1 AC3 1 PHE A 297 SITE 1 AC4 6 HIS A 78 HIS A 80 HIS A 227 ASP A 315 SITE 2 AC4 6 ZN A 505 HOH A 790 SITE 1 AC5 4 ASP A 315 ZN A 504 HOH A 790 HOH A 844 SITE 1 AC6 5 HIS A 184 LEU A 220 HOH A 845 HOH A 846 SITE 2 AC6 5 HOH A 847 CRYST1 133.645 53.150 67.390 90.00 106.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007483 0.000000 0.002222 0.00000 SCALE2 0.000000 0.018815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015480 0.00000