HEADER HYDROLASE/HYDROLASE INHIBITOR 02-MAR-12 4E06 TITLE ANOPHELIN FROM THE MALARIA VECTOR INHIBITS THROMBIN THROUGH A NOVEL TITLE 2 REVERSE-BINDING MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN (UNP RESIDUES 328-363); COMPND 5 SYNONYM: COAGULATION FACTOR II; COMPND 6 EC: 3.4.21.5; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THROMBIN; COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: HEAVY CHAIN (UNP RESIDUES 364-622); COMPND 11 SYNONYM: COAGULATION FACTOR II; COMPND 12 EC: 3.4.21.5; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SALIVARY ANTI-THROMBIN PEPTIDE ANOPHELIN; COMPND 15 CHAIN: I; COMPND 16 FRAGMENT: MATURE ANOPHELIN (UNP RESIDUES 23-83); COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ANOPHELES ALBIMANUS; SOURCE 11 ORGANISM_COMMON: NEW WORLD MALARIA MOSQUITO; SOURCE 12 ORGANISM_TAXID: 7167; SOURCE 13 GENE: ANOPHELIN; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTYB11 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.FIGUEIREDO,D.DE SANCTIS,R.GUTIERREZ-GALLEGO,T.B.CEREIJA,S.MACEDO- AUTHOR 2 RIBEIRO,P.FUENTES-PRIOR,P.J.B.PEREIRA REVDAT 5 13-SEP-23 4E06 1 HETSYN REVDAT 4 29-JUL-20 4E06 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 09-JAN-13 4E06 1 JRNL REVDAT 2 26-DEC-12 4E06 1 JRNL REVDAT 1 05-DEC-12 4E06 0 JRNL AUTH A.C.FIGUEIREDO,D.DE SANCTIS,R.GUTIERREZ-GALLEGO,T.B.CEREIJA, JRNL AUTH 2 S.MACEDO-RIBEIRO,P.FUENTES-PRIOR,P.J.PEREIRA JRNL TITL UNIQUE THROMBIN INHIBITION MECHANISM BY ANOPHELIN, AN JRNL TITL 2 ANTICOAGULANT FROM THE MALARIA VECTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E3649 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23223529 JRNL DOI 10.1073/PNAS.1211614109 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8381 - 6.1093 1.00 2511 117 0.1929 0.2270 REMARK 3 2 6.1093 - 4.8507 1.00 2443 131 0.1516 0.1698 REMARK 3 3 4.8507 - 4.2380 1.00 2413 124 0.1231 0.1509 REMARK 3 4 4.2380 - 3.8508 1.00 2420 135 0.1492 0.1932 REMARK 3 5 3.8508 - 3.5749 1.00 2395 140 0.1781 0.2144 REMARK 3 6 3.5749 - 3.3641 1.00 2379 123 0.2351 0.2701 REMARK 3 7 3.3641 - 3.1960 0.99 2380 141 0.3169 0.3389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 79.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.97940 REMARK 3 B22 (A**2) : -15.97940 REMARK 3 B33 (A**2) : 31.95880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2556 REMARK 3 ANGLE : 1.297 3451 REMARK 3 CHIRALITY : 0.087 360 REMARK 3 PLANARITY : 0.005 444 REMARK 3 DIHEDRAL : 16.912 968 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17855 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.196 REMARK 200 RESOLUTION RANGE LOW (A) : 46.833 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : 0.80700 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U69 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 4.5, 3 M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 104.82950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.52334 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.47067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 104.82950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.52334 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.47067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 104.82950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.52334 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.47067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 104.82950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 60.52334 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.47067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 104.82950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 60.52334 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.47067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 104.82950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 60.52334 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.47067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 121.04668 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.94133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 121.04668 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 84.94133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 121.04668 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 84.94133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 121.04668 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.94133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 121.04668 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 84.94133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 121.04668 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 84.94133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 709 LIES ON A SPECIAL POSITION. REMARK 375 HOH I 102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 285 REMARK 465 PHE L 286 REMARK 465 GLY L 287 REMARK 465 SER L 288 REMARK 465 GLY L 289 REMARK 465 GLU L 290 REMARK 465 GLY L 319 REMARK 465 ARG L 320 REMARK 465 TRP H 468 REMARK 465 THR H 469 REMARK 465 ALA H 470 REMARK 465 ASN H 471 REMARK 465 VAL H 472 REMARK 465 GLY H 473 REMARK 465 LYS H 474 REMARK 465 ALA I 1 REMARK 465 PRO I 2 REMARK 465 GLN I 3 REMARK 465 TYR I 4 REMARK 465 ALA I 5 REMARK 465 PRO I 6 REMARK 465 GLY I 7 REMARK 465 ASP I 8 REMARK 465 GLU I 9 REMARK 465 PRO I 10 REMARK 465 SER I 11 REMARK 465 TYR I 12 REMARK 465 ASP I 13 REMARK 465 GLU I 14 REMARK 465 ASP I 15 REMARK 465 THR I 16 REMARK 465 ASP I 17 REMARK 465 ASP I 18 REMARK 465 SER I 19 REMARK 465 ASP I 20 REMARK 465 LYS I 21 REMARK 465 LEU I 22 REMARK 465 VAL I 23 REMARK 465 GLU I 24 REMARK 465 ASN I 25 REMARK 465 ASP I 26 REMARK 465 THR I 27 REMARK 465 SER I 28 REMARK 465 ILE I 29 REMARK 465 THR I 30 REMARK 465 ASP I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS L 293 155.48 -42.33 REMARK 500 PHE L 299 -76.97 -142.74 REMARK 500 SER L 303 73.48 34.11 REMARK 500 LYS H 341 -72.69 -63.40 REMARK 500 CYS H 348 -178.14 -171.99 REMARK 500 TYR H 367 84.62 -160.46 REMARK 500 ASN H 373 90.52 -166.60 REMARK 500 HIS H 386 -55.68 -128.13 REMARK 500 ILE H 395 -65.20 -142.15 REMARK 500 ASN H 415 17.98 -151.31 REMARK 500 SER H 432 -169.35 -127.77 REMARK 500 THR H 502 173.67 -59.51 REMARK 500 SER H 525 151.47 -44.79 REMARK 500 ASN H 537 14.69 48.76 REMARK 500 GLN H 576 -92.72 -76.05 REMARK 500 ALA I 35 80.98 62.07 REMARK 500 ALA I 36 54.47 -154.13 REMARK 500 ILE I 37 98.46 11.76 REMARK 500 ALA I 39 14.39 58.89 REMARK 500 THR I 44 79.52 -154.46 REMARK 500 ALA I 48 -158.59 -71.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 553 O REMARK 620 2 LYS H 556 O 92.0 REMARK 620 3 HOH H 701 O 162.6 70.6 REMARK 620 4 HOH H 702 O 89.1 105.3 94.6 REMARK 620 5 HOH H 703 O 99.5 168.5 97.9 75.7 REMARK 620 6 HOH H 704 O 84.8 75.3 91.4 173.9 105.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E05 RELATED DB: PDB REMARK 900 HUMAN ALPHA-THROMBIN:INHIBITOR COMPLEX IN SPACE GROUP P 31 1 2 DBREF 4E06 L 285 320 UNP P00734 THRB_HUMAN 328 363 DBREF 4E06 H 321 579 UNP P00734 THRB_HUMAN 364 622 DBREF 4E06 I 1 61 UNP Q9NJS1 Q9NJS1_ANOAL 23 83 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 61 ALA PRO GLN TYR ALA PRO GLY ASP GLU PRO SER TYR ASP SEQRES 2 I 61 GLU ASP THR ASP ASP SER ASP LYS LEU VAL GLU ASN ASP SEQRES 3 I 61 THR SER ILE THR ASP GLU ASP TYR ALA ALA ILE GLU ALA SEQRES 4 I 61 SER LEU SER GLU THR PHE ASN THR ALA ALA ASP PRO GLY SEQRES 5 I 61 ARG ARG LEU GLY GLU GLY SER LYS PRO MODRES 4E06 ASN H 373 ASN GLYCOSYLATION SITE HET NAG H 601 14 HET NA H 602 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 NA NA 1+ FORMUL 6 HOH *23(H2 O) HELIX 1 1 THR L 308 ASP L 318 1 11 HELIX 2 2 PRO H 368 ASP H 371 5 4 HELIX 3 3 ASP H 442 LEU H 450 1 9 HELIX 4 4 GLU H 489 ASP H 495 1 7 HELIX 5 5 LEU H 566 GLN H 576 1 11 HELIX 6 6 PRO I 51 SER I 59 5 9 SHEET 1 A 7 SER H 325 ASP H 326 0 SHEET 2 A 7 GLN H 481 PRO H 486 -1 O VAL H 482 N SER H 325 SHEET 3 A 7 LYS H 455 GLY H 460 -1 N VAL H 458 O VAL H 483 SHEET 4 A 7 PRO H 528 LYS H 532 -1 O VAL H 530 N ARG H 457 SHEET 5 A 7 TRP H 539 GLY H 548 -1 O TYR H 540 N MET H 531 SHEET 6 A 7 GLY H 558 HIS H 562 -1 O PHE H 559 N TRP H 547 SHEET 7 A 7 MET H 505 ALA H 508 -1 N PHE H 506 O TYR H 560 SHEET 1 B 8 ASN I 46 THR I 47 0 SHEET 2 B 8 GLU H 345 LEU H 352 1 N LEU H 346 O ASN I 46 SHEET 3 B 8 TRP H 357 THR H 360 -1 O LEU H 359 N SER H 351 SHEET 4 B 8 ALA H 421 LEU H 425 -1 O MET H 423 N VAL H 358 SHEET 5 B 8 LYS H 397 ILE H 406 -1 N GLU H 402 O LYS H 424 SHEET 6 B 8 LEU H 379 ILE H 383 -1 N ILE H 383 O LYS H 397 SHEET 7 B 8 GLN H 335 ARG H 340 -1 N PHE H 339 O LEU H 380 SHEET 8 B 8 GLU H 345 LEU H 352 -1 O ALA H 350 N VAL H 336 SHEET 1 C 2 LEU H 366 TYR H 367 0 SHEET 2 C 2 LYS H 372 ASN H 373 -1 O LYS H 372 N TYR H 367 SSBOND 1 CYS L 293 CYS H 439 1555 1555 2.05 SSBOND 2 CYS H 348 CYS H 364 1555 1555 2.04 SSBOND 3 CYS H 493 CYS H 507 1555 1555 2.03 SSBOND 4 CYS H 521 CYS H 551 1555 1555 2.06 LINK ND2 ASN H 373 C1 NAG H 601 1555 1555 1.46 LINK O ARG H 553 NA NA H 602 1555 1555 2.54 LINK O LYS H 556 NA NA H 602 1555 1555 2.22 LINK NA NA H 602 O HOH H 701 1555 1555 2.42 LINK NA NA H 602 O HOH H 702 1555 1555 2.52 LINK NA NA H 602 O HOH H 703 1555 1555 2.41 LINK NA NA H 602 O HOH H 704 1555 1555 2.59 CISPEP 1 SER H 342 PRO H 343 0 -5.35 CRYST1 209.659 209.659 127.412 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004770 0.002754 0.000000 0.00000 SCALE2 0.000000 0.005508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007849 0.00000