HEADER PROTEIN FIBRIL 04-MAR-12 4E0O TITLE SVQIVYK SEGMENT FROM HUMAN TAU (305-311) DISPLAYED ON 54-MEMBERED TITLE 2 MACROCYCLE SCAFFOLD (FORM III) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE SVQIVYK(ORN)EF(HAO)(4BF)K(ORN); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC MOLECULE KEYWDS AMYLOID, OUT-OF-REGISTER, FIBER-FORMING, MACROCYCLE, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,C.LIU,M.R.SAWAYA,D.EISENBERG REVDAT 4 15-NOV-23 4E0O 1 REMARK LINK ATOM REVDAT 3 29-JAN-20 4E0O 1 REMARK LINK REVDAT 2 19-JUN-13 4E0O 1 JRNL REVDAT 1 19-DEC-12 4E0O 0 JRNL AUTH C.LIU,M.ZHAO,L.JIANG,P.N.CHENG,J.PARK,M.R.SAWAYA, JRNL AUTH 2 A.PENSALFINI,D.GOU,A.J.BERK,C.G.GLABE,J.NOWICK,D.EISENBERG JRNL TITL OUT-OF-REGISTER BETA-SHEETS SUGGEST A PATHWAY TO TOXIC JRNL TITL 2 AMYLOID AGGREGATES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 20913 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23213214 JRNL DOI 10.1073/PNAS.1218792109 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 369 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2048 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1712 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1945 REMARK 3 BIN R VALUE (WORKING SET) : 0.1687 REMARK 3 BIN FREE R VALUE : 0.2168 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 103 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99890 REMARK 3 B22 (A**2) : -4.48350 REMARK 3 B33 (A**2) : 2.48460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.196 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 646 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 869 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 129 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 29 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 97 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 430 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.38 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 0 A 13 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4438 -1.9065 23.2075 REMARK 3 T TENSOR REMARK 3 T11: -0.0279 T22: -0.0900 REMARK 3 T33: 0.0043 T12: 0.0009 REMARK 3 T13: -0.0064 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.8492 L22: 4.1704 REMARK 3 L33: 1.9376 L12: 0.1395 REMARK 3 L13: -1.4144 L23: 1.2660 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.1181 S13: -0.0020 REMARK 3 S21: -0.0831 S22: -0.1537 S23: 0.3266 REMARK 3 S31: 0.1580 S32: -0.1659 S33: 0.1731 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 0 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8810 8.2013 21.8595 REMARK 3 T TENSOR REMARK 3 T11: -0.1507 T22: -0.1791 REMARK 3 T33: -0.0501 T12: 0.0157 REMARK 3 T13: -0.0114 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.3895 L22: 5.1972 REMARK 3 L33: 3.7185 L12: -1.6697 REMARK 3 L13: -2.7145 L23: 2.8130 REMARK 3 S TENSOR REMARK 3 S11: 0.1848 S12: 0.2965 S13: 0.1487 REMARK 3 S21: -0.3851 S22: -0.1897 S23: 0.0221 REMARK 3 S31: -0.1307 S32: -0.2034 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: C 0 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2427 9.6723 -0.8092 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: -0.0538 REMARK 3 T33: 0.0153 T12: 0.0020 REMARK 3 T13: -0.0025 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.1518 L22: 4.3502 REMARK 3 L33: 2.5646 L12: 0.0014 REMARK 3 L13: 0.7420 L23: -1.4501 REMARK 3 S TENSOR REMARK 3 S11: 0.1262 S12: -0.0309 S13: 0.0197 REMARK 3 S21: 0.2342 S22: -0.2080 S23: -0.4126 REMARK 3 S31: -0.2411 S32: 0.3486 S33: 0.0818 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: D 0 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4004 -0.3648 -2.9006 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: -0.0877 REMARK 3 T33: 0.0060 T12: 0.0035 REMARK 3 T13: -0.0343 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: -0.0125 L22: 7.4537 REMARK 3 L33: 3.3683 L12: 0.1943 REMARK 3 L13: 0.2650 L23: 1.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.2177 S12: 0.0841 S13: -0.0601 REMARK 3 S21: -0.0967 S22: -0.1541 S23: -0.5075 REMARK 3 S31: 0.1527 S32: 0.2822 S33: -0.0636 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4E0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 18.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA/K PHOSPHATE BUFFER PH 6.2, 35% REMARK 280 (V/V) 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 12.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS D 13 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ORN A 0 C SER A 1 N 0.140 REMARK 500 ORN D 0 C SER D 1 N 0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ORN A 0 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 HAO A 11 CA - C - N ANGL. DEV. = 26.3 DEGREES REMARK 500 HAO B 11 CA - C - N ANGL. DEV. = 24.5 DEGREES REMARK 500 4BF B 12 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 HAO C 11 CA - C - N ANGL. DEV. = 31.3 DEGREES REMARK 500 ORN D 8 CA - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 HAO D 11 CA - C - N ANGL. DEV. = 30.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 4BF B 12 -23.38 REMARK 500 4BF B 12 -25.31 REMARK 500 ORN C 8 -11.13 REMARK 500 ORN D 8 12.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 206 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B 215 DISTANCE = 7.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E0K RELATED DB: PDB REMARK 900 RELATED ID: 4E0L RELATED DB: PDB REMARK 900 RELATED ID: 4E0M RELATED DB: PDB REMARK 900 RELATED ID: 4E0N RELATED DB: PDB DBREF 4E0O A 0 13 PDB 4E0O 4E0O 0 13 DBREF 4E0O B 0 13 PDB 4E0O 4E0O 0 13 DBREF 4E0O C 0 13 PDB 4E0O 4E0O 0 13 DBREF 4E0O D 0 13 PDB 4E0O 4E0O 0 13 SEQRES 1 A 14 ORN SER VAL GLN ILE VAL TYR LYS ORN GLU PHE HAO 4BF SEQRES 2 A 14 LYS SEQRES 1 B 14 ORN SER VAL GLN ILE VAL TYR LYS ORN GLU PHE HAO 4BF SEQRES 2 B 14 LYS SEQRES 1 C 14 ORN SER VAL GLN ILE VAL TYR LYS ORN GLU PHE HAO 4BF SEQRES 2 C 14 LYS SEQRES 1 D 14 ORN SER VAL GLN ILE VAL TYR LYS ORN GLU PHE HAO 4BF SEQRES 2 D 14 LYS MODRES 4E0O ORN A 0 ALA L-ORNITHINE MODRES 4E0O ORN A 8 ALA L-ORNITHINE MODRES 4E0O 4BF A 12 TYR 4-BROMO-L-PHENYLALANINE MODRES 4E0O ORN B 0 ALA L-ORNITHINE MODRES 4E0O ORN B 8 ALA L-ORNITHINE MODRES 4E0O 4BF B 12 TYR 4-BROMO-L-PHENYLALANINE MODRES 4E0O ORN C 0 ALA L-ORNITHINE MODRES 4E0O ORN C 8 ALA L-ORNITHINE MODRES 4E0O 4BF C 12 TYR 4-BROMO-L-PHENYLALANINE MODRES 4E0O ORN D 0 ALA L-ORNITHINE MODRES 4E0O ORN D 8 ALA L-ORNITHINE MODRES 4E0O 4BF D 12 TYR 4-BROMO-L-PHENYLALANINE HET ORN A 0 8 HET ORN A 8 8 HET HAO A 11 17 HET 4BF A 12 21 HET ORN B 0 8 HET ORN B 8 8 HET HAO B 11 17 HET 4BF B 12 21 HET ORN C 0 8 HET ORN C 8 8 HET HAO C 11 17 HET 4BF C 12 21 HET ORN D 0 8 HET ORN D 8 8 HET HAO D 11 17 HET 4BF D 12 21 HET MPD A 101 8 HET MPD A 102 8 HET PO4 B 101 5 HET MPD B 102 8 HET MPD B 103 8 HET MPD C 101 8 HET PO4 D 101 5 HET PO4 D 102 5 HET MPD D 103 8 HET MPD D 104 8 HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM 4BF 4-BROMO-L-PHENYLALANINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN 4BF P-BROMO-L-PHENYLALANINE FORMUL 1 ORN 8(C5 H12 N2 O2) FORMUL 1 HAO 4(C10 H11 N3 O5) FORMUL 1 4BF 4(C9 H10 BR N O2) FORMUL 5 MPD 7(C6 H14 O2) FORMUL 7 PO4 3(O4 P 3-) FORMUL 15 HOH *50(H2 O) SHEET 1 A 2 ILE A 4 TYR A 6 0 SHEET 2 A 2 ILE B 4 TYR B 6 -1 O TYR B 6 N ILE A 4 SHEET 1 B 2 ILE C 4 TYR C 6 0 SHEET 2 B 2 ILE D 4 TYR D 6 -1 O ILE D 4 N TYR C 6 LINK C ORN A 0 N SER A 1 1555 1555 1.48 LINK NE ORN A 0 C LYS A 13 1555 1555 1.37 LINK C LYS A 7 NE ORN A 8 1555 1555 1.39 LINK C ORN A 8 N GLU A 9 1555 1555 1.36 LINK C PHE A 10 N HAO A 11 1555 1555 1.38 LINK C HAO A 11 N 4BF A 12 1555 1555 1.36 LINK C 4BF A 12 N LYS A 13 1555 1555 1.34 LINK C ORN B 0 N SER B 1 1555 1555 1.45 LINK NE ORN B 0 C LYS B 13 1555 1555 1.41 LINK C LYS B 7 NE ORN B 8 1555 1555 1.37 LINK C ORN B 8 N GLU B 9 1555 1555 1.34 LINK C PHE B 10 N HAO B 11 1555 1555 1.33 LINK C HAO B 11 N 4BF B 12 1555 1555 1.30 LINK C 4BF B 12 N LYS B 13 1555 1555 1.35 LINK C ORN C 0 N SER C 1 1555 1555 1.45 LINK NE ORN C 0 C LYS C 13 1555 1555 1.32 LINK C LYS C 7 NE ORN C 8 1555 1555 1.45 LINK C ORN C 8 N GLU C 9 1555 1555 1.35 LINK C PHE C 10 N HAO C 11 1555 1555 1.35 LINK C HAO C 11 N 4BF C 12 1555 1555 1.24 LINK C 4BF C 12 N LYS C 13 1555 1555 1.36 LINK C ORN D 0 N SER D 1 1555 1555 1.52 LINK NE ORN D 0 C LYS D 13 1555 1555 1.35 LINK C LYS D 7 NE ORN D 8 1555 1555 1.34 LINK C ORN D 8 N GLU D 9 1555 1555 1.40 LINK C PHE D 10 N HAO D 11 1555 1555 1.33 LINK C HAO D 11 N 4BF D 12 1555 1555 1.29 LINK C 4BF D 12 N LYS D 13 1555 1555 1.35 SITE 1 AC1 4 VAL A 5 GLU A 9 PHE A 10 HAO A 11 SITE 1 AC2 5 VAL A 2 HAO A 11 4BF A 12 HAO B 11 SITE 2 AC2 5 4BF B 12 SITE 1 AC3 6 TYR B 6 ORN B 8 HOH B 203 HOH B 209 SITE 2 AC3 6 HOH B 212 HOH B 213 SITE 1 AC4 5 VAL B 5 GLU B 9 PHE B 10 HAO B 11 SITE 2 AC4 5 HOH B 216 SITE 1 AC5 3 GLN B 3 VAL B 5 HAO B 11 SITE 1 AC6 5 GLN C 3 VAL C 5 HAO C 11 4BF C 12 SITE 2 AC6 5 4BF D 12 SITE 1 AC7 6 TYR D 6 ORN D 8 PO4 D 102 HOH D 207 SITE 2 AC7 6 HOH D 209 HOH D 210 SITE 1 AC8 6 ORN D 8 PO4 D 101 HOH D 201 HOH D 208 SITE 2 AC8 6 HOH D 211 HOH D 212 SITE 1 AC9 5 VAL C 2 HAO C 11 4BF C 12 HAO D 11 SITE 2 AC9 5 4BF D 12 SITE 1 BC1 4 VAL D 5 GLU D 9 PHE D 10 HAO D 11 CRYST1 30.410 25.430 52.530 90.00 91.19 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032884 0.000000 0.000683 0.00000 SCALE2 0.000000 0.039324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019041 0.00000 HETATM 1 N ORN A 0 14.456 -7.900 10.958 1.00 39.06 N ANISOU 1 N ORN A 0 6284 4215 4342 -194 215 -284 N HETATM 2 CA ORN A 0 13.865 -7.780 12.290 1.00155.79 C ANISOU 2 CA ORN A 0 20858 19045 19291 -163 133 -257 C HETATM 3 CB ORN A 0 13.127 -9.065 12.682 1.00 39.44 C ANISOU 3 CB ORN A 0 6048 4301 4637 -245 153 -372 C HETATM 4 CG ORN A 0 11.850 -9.331 11.885 1.00 45.64 C ANISOU 4 CG ORN A 0 6852 5170 5319 -318 -4 -512 C HETATM 5 CD ORN A 0 10.598 -9.602 12.728 1.00 71.06 C ANISOU 5 CD ORN A 0 9883 8440 8677 -357 -95 -596 C HETATM 6 NE ORN A 0 10.374 -8.604 13.772 1.00 59.36 N ANISOU 6 NE ORN A 0 8263 6991 7298 -276 -164 -495 N HETATM 7 C ORN A 0 14.906 -7.434 13.354 1.00 32.71 C ANISOU 7 C ORN A 0 5174 3403 3853 -97 243 -151 C HETATM 8 O ORN A 0 16.079 -7.801 13.237 1.00 60.56 O ANISOU 8 O ORN A 0 8743 6842 7425 -89 408 -130 O