HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-MAR-12 4E1E TITLE CRYSTAL STRUCTURE OF TRYPANOSOME CRUZI FARNESYL DIPHOSPHATE SYNTHASE TITLE 2 IN COMPLEX WITH [2-(N-HEXYLAMINO)ETHANE-1,1-DIYL]BISPHOSPHONIC ACID TITLE 3 AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPPS, FARNESYL DIPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: FPPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GERANYL TRANSFERASE, FARNESYL PYROPHOSPHATE SYNTHASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ARIPIRALA,L.M.AMZEL,S.B.GABELLI REVDAT 3 13-SEP-23 4E1E 1 REMARK LINK REVDAT 2 17-APR-13 4E1E 1 FORMUL HETATM HETNAM HETSYN REVDAT 1 16-JAN-13 4E1E 0 JRNL AUTH S.ARIPIRALA,S.H.SZAJNMAN,J.JAKONCIC,J.B.RODRIGUEZ,R.DOCAMPO, JRNL AUTH 2 S.B.GABELLI,L.M.AMZEL JRNL TITL DESIGN, SYNTHESIS, CALORIMETRY, AND CRYSTALLOGRAPHIC JRNL TITL 2 ANALYSIS OF 2-ALKYLAMINOETHYL-1,1-BISPHOSPHONATES AS JRNL TITL 3 INHIBITORS OF TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE JRNL TITL 4 SYNTHASE. JRNL REF J.MED.CHEM. V. 55 6445 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22715997 JRNL DOI 10.1021/JM300425Y REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 12120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.315 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.838 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2999 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4068 ; 1.133 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 4.665 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;38.526 ;24.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;15.737 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2254 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 0.383 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2926 ; 0.728 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 0.962 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1142 ; 1.622 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4E1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 65.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.31100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 262.62200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 196.96650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 328.27750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.65550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.31100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 262.62200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 328.27750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 196.96650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.65550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -29.28750 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -50.72744 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -65.65550 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 120 155.53 67.36 REMARK 500 ASP A 181 115.00 -172.19 REMARK 500 THR A 208 -54.62 -127.88 REMARK 500 TYR A 213 -56.25 -130.26 REMARK 500 CYS A 274 71.37 -69.98 REMARK 500 LYS A 284 -22.19 -147.62 REMARK 500 ASN A 296 -10.33 -140.62 REMARK 500 VAL A 341 -73.38 -63.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 102 OD2 73.9 REMARK 620 3 0MW A 404 O1 87.1 160.4 REMARK 620 4 0MW A 404 O4 93.6 81.6 95.0 REMARK 620 5 HOH A 507 O 66.9 90.0 86.9 160.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 102 OD2 81.2 REMARK 620 3 0MW A 404 O4 114.7 85.4 REMARK 620 4 HOH A 508 O 91.4 171.5 101.5 REMARK 620 5 HOH A 509 O 166.0 105.7 78.4 80.7 REMARK 620 6 HOH A 510 O 82.4 98.5 162.9 76.4 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 0MW A 404 O5 82.0 REMARK 620 3 0MW A 404 O2 86.8 63.3 REMARK 620 4 HOH A 511 O 83.0 139.6 78.6 REMARK 620 5 HOH A 512 O 166.8 98.4 81.7 88.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0MW A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YHK RELATED DB: PDB REMARK 900 RELATED ID: 1YHL RELATED DB: PDB REMARK 900 RELATED ID: 1YHM RELATED DB: PDB REMARK 900 RELATED ID: 3IBA RELATED DB: PDB REMARK 900 RELATED ID: 3ICK RELATED DB: PDB REMARK 900 RELATED ID: 3ICM RELATED DB: PDB REMARK 900 RELATED ID: 3ICN RELATED DB: PDB REMARK 900 RELATED ID: 3ICZ RELATED DB: PDB REMARK 900 RELATED ID: 4DWB RELATED DB: PDB REMARK 900 RELATED ID: 4DWG RELATED DB: PDB REMARK 900 RELATED ID: 4DXJ RELATED DB: PDB REMARK 900 RELATED ID: 4DZW RELATED DB: PDB DBREF 4E1E A 2 362 UNP Q95WL3 Q95WL3_TRYCR 2 362 SEQRES 1 A 361 ALA SER MET GLU ARG PHE LEU SER VAL TYR ASP GLU VAL SEQRES 2 A 361 GLN ALA PHE LEU LEU ASP GLN LEU GLN SER LYS TYR GLU SEQRES 3 A 361 ILE ASP PRO ASN ARG ALA ARG TYR LEU ARG ILE MET MET SEQRES 4 A 361 ASP THR THR CYS LEU GLY GLY LYS TYR PHE ARG GLY MET SEQRES 5 A 361 THR VAL VAL ASN VAL ALA GLU GLY PHE LEU ALA VAL THR SEQRES 6 A 361 GLN HIS ASP GLU ALA THR LYS GLU ARG ILE LEU HIS ASP SEQRES 7 A 361 ALA CYS VAL GLY GLY TRP MET ILE GLU PHE LEU GLN ALA SEQRES 8 A 361 HIS TYR LEU VAL GLU ASP ASP ILE MET ASP GLY SER VAL SEQRES 9 A 361 MET ARG ARG GLY LYS PRO CYS TRP TYR ARG PHE PRO GLY SEQRES 10 A 361 VAL THR THR GLN CYS ALA ILE ASN ASP GLY ILE ILE LEU SEQRES 11 A 361 LYS SER TRP THR GLN ILE MET ALA TRP HIS TYR PHE ALA SEQRES 12 A 361 ASP ARG PRO PHE LEU LYS ASP LEU LEU CYS LEU PHE GLN SEQRES 13 A 361 LYS VAL ASP TYR ALA THR ALA VAL GLY GLN MET TYR ASP SEQRES 14 A 361 VAL THR SER MET CYS ASP SER ASN LYS LEU ASP PRO GLU SEQRES 15 A 361 VAL ALA GLN PRO MET THR THR ASP PHE ALA GLU PHE THR SEQRES 16 A 361 PRO ALA ILE TYR LYS ARG ILE VAL LYS TYR LYS THR THR SEQRES 17 A 361 PHE TYR THR TYR LEU LEU PRO LEU VAL MET GLY LEU PHE SEQRES 18 A 361 VAL SER GLU ALA ALA ALA SER VAL GLU MET ASN LEU VAL SEQRES 19 A 361 GLU ARG VAL ALA HIS LEU ILE GLY GLU TYR PHE GLN VAL SEQRES 20 A 361 GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU GLN SEQRES 21 A 361 LEU GLY LYS VAL GLY THR ASP ILE GLU ASP ALA LYS CYS SEQRES 22 A 361 SER TRP LEU ALA VAL THR PHE LEU GLY LYS ALA ASN ALA SEQRES 23 A 361 ALA GLN VAL ALA GLU PHE LYS ALA ASN TYR GLY ASP LYS SEQRES 24 A 361 ASP PRO ALA LYS VAL ALA VAL VAL LYS ARG LEU TYR SER SEQRES 25 A 361 GLU ALA ASN LEU GLN ALA ASP PHE ALA ALA TYR GLU ALA SEQRES 26 A 361 GLU VAL VAL ARG GLU VAL GLU SER LEU ILE GLU GLN LEU SEQRES 27 A 361 LYS VAL LYS SER PRO THR PHE ALA GLU SER VAL ALA VAL SEQRES 28 A 361 VAL TRP GLU LYS THR HIS LYS ARG LYS LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET 0MW A 404 17 HET IPE A 405 14 HET NA A 406 1 HETNAM MG MAGNESIUM ION HETNAM 0MW [2-(HEXYLAMINO)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID) HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM NA SODIUM ION HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 0MW C8 H21 N O6 P2 FORMUL 6 IPE C5 H12 O7 P2 FORMUL 7 NA NA 1+ FORMUL 8 HOH *23(H2 O) HELIX 1 1 SER A 3 TYR A 26 1 24 HELIX 2 2 ASP A 29 LEU A 45 1 17 HELIX 3 3 TYR A 49 ALA A 64 1 16 HELIX 4 4 ASP A 69 GLY A 103 1 35 HELIX 5 5 TRP A 113 PHE A 116 5 4 HELIX 6 6 VAL A 119 ALA A 144 1 26 HELIX 7 7 PHE A 148 THR A 172 1 25 HELIX 8 8 ASP A 176 LEU A 180 5 5 HELIX 9 9 THR A 196 THR A 208 1 13 HELIX 10 10 THR A 208 TYR A 213 1 6 HELIX 11 11 TYR A 213 VAL A 223 1 11 HELIX 12 12 GLU A 231 THR A 257 1 27 HELIX 13 13 PRO A 258 GLY A 263 1 6 HELIX 14 14 SER A 275 GLY A 283 1 9 HELIX 15 15 ASN A 286 ALA A 295 1 10 HELIX 16 16 ASP A 301 ALA A 315 1 15 HELIX 17 17 ASN A 316 VAL A 341 1 26 HELIX 18 18 SER A 343 LYS A 359 1 17 SHEET 1 A 2 MET A 106 ARG A 107 0 SHEET 2 A 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 LINK OD2 ASP A 98 MG MG A 402 1555 1555 2.41 LINK OD1 ASP A 98 MG MG A 403 1555 1555 2.27 LINK OD2 ASP A 102 MG MG A 402 1555 1555 2.20 LINK OD2 ASP A 102 MG MG A 403 1555 1555 2.21 LINK OD2 ASP A 250 MG MG A 401 1555 1555 2.22 LINK MG MG A 401 O5 0MW A 404 1555 1555 2.19 LINK MG MG A 401 O2 0MW A 404 1555 1555 2.34 LINK MG MG A 401 O HOH A 511 1555 1555 2.29 LINK MG MG A 401 O HOH A 512 1555 1555 2.05 LINK MG MG A 402 O1 0MW A 404 1555 1555 1.91 LINK MG MG A 402 O4 0MW A 404 1555 1555 2.38 LINK MG MG A 402 O HOH A 507 1555 1555 2.24 LINK MG MG A 403 O4 0MW A 404 1555 1555 2.21 LINK MG MG A 403 O HOH A 508 1555 1555 2.17 LINK MG MG A 403 O HOH A 509 1555 1555 2.31 LINK MG MG A 403 O HOH A 510 1555 1555 2.20 LINK NA NA A 406 O HOH A 514 1555 1555 2.48 CISPEP 1 LEU A 262 GLY A 263 0 -6.36 SITE 1 AC1 4 ASP A 250 0MW A 404 HOH A 511 HOH A 512 SITE 1 AC2 5 ASP A 98 ASP A 102 MG A 403 0MW A 404 SITE 2 AC2 5 HOH A 507 SITE 1 AC3 8 ASP A 98 ASP A 102 ASP A 170 MG A 402 SITE 2 AC3 8 0MW A 404 HOH A 508 HOH A 509 HOH A 510 SITE 1 AC4 18 TYR A 94 ASP A 98 ASP A 102 ARG A 107 SITE 2 AC4 18 GLN A 167 LYS A 207 GLN A 247 ASP A 250 SITE 3 AC4 18 LYS A 264 MG A 401 MG A 402 MG A 403 SITE 4 AC4 18 IPE A 405 HOH A 507 HOH A 508 HOH A 509 SITE 5 AC4 18 HOH A 511 HOH A 512 SITE 1 AC5 11 GLY A 47 LYS A 48 ARG A 51 GLN A 91 SITE 2 AC5 11 ARG A 108 TYR A 211 PHE A 246 GLN A 247 SITE 3 AC5 11 ASP A 250 LYS A 264 0MW A 404 SITE 1 AC6 2 HIS A 141 HOH A 514 CRYST1 58.575 58.575 393.933 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017072 0.009857 0.000000 0.00000 SCALE2 0.000000 0.019713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002539 0.00000