HEADER OXIDOREDUCTASE 08-MAR-12 4E2B TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE OLD YELLOW ENZYME FROM TITLE 2 TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLD YELLOW ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM-BARREL FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MURAKAMI,N.C.RODRIGUES,L.M.GAVA,F.CANDURI,G.OLIVA,L.R.S.BARBOSA, AUTHOR 2 J.C.BORGERS REVDAT 2 13-SEP-23 4E2B 1 REMARK SEQADV REVDAT 1 27-MAR-13 4E2B 0 JRNL AUTH M.T.MURAKAMI,N.C.RODRIGUES,L.M.GAVA,F.CANDURI,G.OLIVA, JRNL AUTH 2 L.R.S.BARBOSA,J.C.BORGERS JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE AND IN SOLUTION STUDIES OF JRNL TITL 2 THE OLD YELLOW ENZYME FROM TRYPANOSOMA CRUZI: INSIGHTS INTO JRNL TITL 3 OLIGOMERIZATION, ENZYME DYNAMICS AND SPECIFICITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 83454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 352 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.010 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.010 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3179 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4321 ; 1.161 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 5.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;36.749 ;23.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;11.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2433 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3179 ; 1.784 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 95 ;11.695 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3371 ; 6.726 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.46 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.269 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ATY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% (W/V) POLYETHYLENE GLYCOL 1500 AND REMARK 280 0.3 M AMMONIUM FLUORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.67350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.32800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.67350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.32800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 303 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 407 O HOH A 626 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 303 CD ARG A 303 NE -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 303 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 45.83 -98.03 REMARK 500 LEU A 72 -51.31 72.61 REMARK 500 ASP A 123 -118.40 71.58 REMARK 500 LEU A 314 109.37 120.93 REMARK 500 ASP A 344 37.93 -97.98 REMARK 500 TYR A 371 -63.49 -128.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ATY RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN A DIFFERENT CRYSTALLINE FORM REMARK 900 RELATED ID: 3ATZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH PHBA REMARK 900 RELATED ID: 4E2D RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN OTHER CRYSTALLINE FORM DBREF 4E2B A 1 379 UNP Q2TJB8 Q2TJB8_TRYCR 1 379 SEQADV 4E2B GLY A -2 UNP Q2TJB8 EXPRESSION TAG SEQADV 4E2B SER A -1 UNP Q2TJB8 EXPRESSION TAG SEQADV 4E2B HIS A 0 UNP Q2TJB8 EXPRESSION TAG SEQRES 1 A 382 GLY SER HIS MET ALA THR PHE PRO GLU LEU LEU ARG PRO SEQRES 2 A 382 LEU LYS LEU GLY ARG TYR THR LEU ARG ASN ARG ILE ILE SEQRES 3 A 382 MET ALA PRO LEU THR ARG CYS GLN ALA THR GLU ASP GLY SEQRES 4 A 382 HIS VAL PRO ARG THR GLU SER MET LEU LYS TYR TYR GLU SEQRES 5 A 382 ASP ARG ALA SER ALA GLY LEU ILE ILE ALA GLU ALA THR SEQRES 6 A 382 MET VAL GLN PRO ASN TYR THR GLY PHE LEU THR GLU PRO SEQRES 7 A 382 GLY ILE TYR SER ASP ALA GLN ILE GLU GLU TRP ARG LYS SEQRES 8 A 382 ILE VAL ASP ALA VAL HIS LYS LYS GLY GLY LEU ILE PHE SEQRES 9 A 382 LEU GLN LEU ILE HIS ALA GLY ARG ALA GLY ILE PRO GLU SEQRES 10 A 382 LYS ILE LEU GLN GLN PRO LYS SER ASP GLN ASP PRO LEU SEQRES 11 A 382 ALA GLY ARG LEU LEU ALA ALA SER ALA ILE PRO ILE LYS SEQRES 12 A 382 ASP HIS ARG ILE PRO ALA TYR PHE ALA ALA SER GLY GLU SEQRES 13 A 382 LYS GLU THR TYR GLY VAL PRO GLU GLU LEU THR ASP ASP SEQRES 14 A 382 GLU VAL ARG ASN GLY ILE ILE PRO LEU PHE VAL GLU GLY SEQRES 15 A 382 ALA LYS ASN ALA ILE PHE LYS ALA GLY PHE ASP GLY VAL SEQRES 16 A 382 GLU ILE HIS GLY ALA ASN GLY TYR LEU LEU ASP ALA PHE SEQRES 17 A 382 PHE ARG GLU SER SER ASN LYS ARG GLN SER GLY PRO TYR SEQRES 18 A 382 ALA GLY THR THR ILE ASP THR ARG CYS GLN LEU ILE TYR SEQRES 19 A 382 ASP VAL THR LYS SER VAL CYS ASP ALA VAL GLY SER ASP SEQRES 20 A 382 ARG VAL GLY LEU ARG ILE SER PRO LEU ASN GLY VAL HIS SEQRES 21 A 382 GLY MET ILE ASP SER ASN PRO GLU ALA LEU THR LYS HIS SEQRES 22 A 382 LEU CYS LYS LYS ILE GLU PRO LEU SER LEU ALA TYR LEU SEQRES 23 A 382 HIS TYR LEU ARG GLY ASP MET VAL ASN GLN GLN ILE GLY SEQRES 24 A 382 ASP VAL VAL ALA TRP VAL ARG GLY SER TYR SER GLY VAL SEQRES 25 A 382 LYS ILE SER ASN LEU ARG TYR ASP PHE GLU GLU ALA ASP SEQRES 26 A 382 GLN GLN ILE ARG GLU GLY LYS VAL ASP ALA VAL ALA PHE SEQRES 27 A 382 GLY ALA LYS PHE ILE ALA ASN PRO ASP LEU VAL GLU ARG SEQRES 28 A 382 ALA GLN HIS ASP TRP PRO LEU ASN GLU PRO ARG PRO GLU SEQRES 29 A 382 THR TYR TYR THR ARG THR ALA VAL GLY TYR ASN ASP TYR SEQRES 30 A 382 PRO THR TYR ASN LYS HET FMN A 401 31 HET GOL A 402 6 HET GOL A 403 6 HET PEG A 404 7 HET PEG A 405 7 HET PEG A 406 7 HET GOL A 407 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 9 HOH *363(H2 O) HELIX 1 1 ARG A 40 ASP A 50 1 11 HELIX 2 2 SER A 79 LYS A 96 1 18 HELIX 3 3 ALA A 107 GLY A 111 5 5 HELIX 4 4 ILE A 112 LEU A 117 1 6 HELIX 5 5 THR A 164 GLY A 171 1 8 HELIX 6 6 GLY A 171 LYS A 186 1 16 HELIX 7 7 TYR A 200 ARG A 207 1 8 HELIX 8 8 THR A 222 GLY A 242 1 21 HELIX 9 9 GLY A 255 MET A 259 5 5 HELIX 10 10 ASN A 263 GLU A 276 1 14 HELIX 11 11 PRO A 277 SER A 279 5 3 HELIX 12 12 ASP A 297 TYR A 306 1 10 HELIX 13 13 ASP A 317 GLU A 327 1 11 HELIX 14 14 GLY A 336 ASN A 342 1 7 HELIX 15 15 ASP A 344 ASP A 352 1 9 HELIX 16 16 ARG A 359 TYR A 363 5 5 SHEET 1 A 2 LEU A 11 LEU A 13 0 SHEET 2 A 2 TYR A 16 LEU A 18 -1 O LEU A 18 N LEU A 11 SHEET 1 B 9 ILE A 22 MET A 24 0 SHEET 2 B 9 LEU A 56 MET A 63 1 O LEU A 56 N MET A 24 SHEET 3 B 9 ILE A 100 ILE A 105 1 O PHE A 101 N ALA A 59 SHEET 4 B 9 GLY A 191 GLY A 196 1 O GLU A 193 N LEU A 104 SHEET 5 B 9 VAL A 246 ILE A 250 1 O GLY A 247 N ILE A 194 SHEET 6 B 9 TYR A 282 LEU A 286 1 O HIS A 284 N LEU A 248 SHEET 7 B 9 LYS A 310 ASN A 313 1 O ILE A 311 N LEU A 283 SHEET 8 B 9 ALA A 332 PHE A 335 1 O ALA A 334 N SER A 312 SHEET 9 B 9 ILE A 22 MET A 24 1 N ILE A 23 O PHE A 335 SHEET 1 C 2 LEU A 132 ALA A 133 0 SHEET 2 C 2 GLU A 161 GLU A 162 1 O GLU A 161 N ALA A 133 SITE 1 AC1 24 ALA A 25 PRO A 26 LEU A 27 THR A 28 SITE 2 AC1 24 ALA A 61 GLN A 103 HIS A 195 ASN A 198 SITE 3 AC1 24 ARG A 249 ASN A 313 LEU A 314 ARG A 315 SITE 4 AC1 24 PHE A 335 GLY A 336 ALA A 337 TYR A 363 SITE 5 AC1 24 TYR A 364 GOL A 407 HOH A 504 HOH A 514 SITE 6 AC1 24 HOH A 665 HOH A 667 HOH A 746 HOH A 838 SITE 1 AC2 10 GLU A 162 LEU A 163 THR A 164 ARG A 213 SITE 2 AC2 10 GLN A 214 SER A 215 HOH A 573 HOH A 633 SITE 3 AC2 10 HOH A 691 HOH A 825 SITE 1 AC3 5 ARG A 19 ASN A 20 SER A 53 HOH A 596 SITE 2 AC3 5 HOH A 643 SITE 1 AC4 7 SER A 209 ILE A 260 ASP A 261 SER A 262 SITE 2 AC4 7 ARG A 359 GLU A 361 HOH A 773 SITE 1 AC5 5 LYS A 46 ASP A 50 ASN A 372 TYR A 374 SITE 2 AC5 5 THR A 376 SITE 1 AC6 3 PRO A 10 THR A 17 HOH A 596 SITE 1 AC7 7 HIS A 195 ASN A 198 TYR A 200 FMN A 401 SITE 2 AC7 7 HOH A 626 HOH A 628 HOH A 838 CRYST1 57.347 68.656 85.190 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011738 0.00000