HEADER OXIDOREDUCTASE 09-MAR-12 4E3E TITLE CRYSTAL STRUCTURE OF PUTATIVE MAOC DOMAIN PROTEIN DEHYDRATASE FROM TITLE 2 CHLOROFLEXUS AURANTIACUS J-10-FL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAOC DOMAIN PROTEIN DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 324602; SOURCE 4 STRAIN: J-10-FL; SOURCE 5 GENE: CAUR_0173; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PROTEIN KEYWDS 2 DEHYDRATASE, NYSGRC, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 3 RESEARCH CONSORTIUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI,S.GARFORTH, AUTHOR 2 A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA,S.LIM, AUTHOR 3 A.CELIKGIL,G.VILLEGAS,B.EVANS,W.ZENCHEK,J.LOVE,A.FISER,K.KHAFIZOV, AUTHOR 4 R.SEIDEL,J.B.BONANNO,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 5 CONSORTIUM (NYSGRC) REVDAT 3 20-NOV-24 4E3E 1 REMARK LINK REVDAT 2 02-MAY-12 4E3E 1 AUTHOR REVDAT 1 21-MAR-12 4E3E 0 JRNL AUTH V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, JRNL AUTH 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN, JRNL AUTH 3 S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,W.ZENCHEK, JRNL AUTH 4 J.LOVE,A.FISER,K.KHAFIZOV,R.SEIDEL,J.B.BONANNO,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MAOC DOMAIN PROTEIN JRNL TITL 2 DEHYDRATASE FROM CHLOROFLEXUS AURANTIACUS J-10-FL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 89193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 332 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.284 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5629 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7685 ; 1.263 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 6.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;35.342 ;22.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;13.742 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;19.233 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4375 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5629 ; 3.886 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 197 ;35.183 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5776 ;19.353 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8277 6.4176 147.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.1102 REMARK 3 T33: 0.0522 T12: 0.0002 REMARK 3 T13: -0.0152 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.4946 L22: 0.5274 REMARK 3 L33: 0.1259 L12: -0.2096 REMARK 3 L13: -0.0626 L23: 0.0460 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0228 S13: 0.0263 REMARK 3 S21: -0.0453 S22: -0.0073 S23: 0.1373 REMARK 3 S31: 0.0153 S32: -0.0058 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4633 -13.9669 100.8929 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0999 REMARK 3 T33: 0.0391 T12: 0.0003 REMARK 3 T13: -0.0091 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.7309 L22: 0.4270 REMARK 3 L33: 0.1331 L12: -0.0800 REMARK 3 L13: -0.0981 L23: -0.0447 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.0428 S13: -0.1094 REMARK 3 S21: 0.0217 S22: -0.0182 S23: -0.0791 REMARK 3 S31: 0.0031 S32: 0.0007 S33: 0.0137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4E3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE:CITRIC ACID, PH REMARK 280 5.5, 40% PEG600, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.71900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.52023 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.93267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 66.71900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 38.52023 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.93267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 66.71900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 38.52023 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.93267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.04047 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 113.86533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 77.04047 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 113.86533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 77.04047 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 113.86533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 683 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 692 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 2 REMARK 465 MSE B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 344 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 344 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 4 131.38 -39.17 REMARK 500 THR A 25 63.42 62.68 REMARK 500 ARG A 61 -179.18 -170.85 REMARK 500 ASN A 185 14.02 -140.15 REMARK 500 VAL A 209 -61.05 72.78 REMARK 500 ARG A 321 121.35 -19.55 REMARK 500 ARG A 321 121.64 -20.00 REMARK 500 TYR A 328 -97.59 -147.12 REMARK 500 ALA A 331 74.92 -67.93 REMARK 500 GLU A 332 53.48 32.57 REMARK 500 THR B 25 65.53 63.72 REMARK 500 ARG B 61 -179.24 -170.41 REMARK 500 ASN B 185 13.89 -143.34 REMARK 500 VAL B 209 -61.20 76.11 REMARK 500 ARG B 321 98.62 16.57 REMARK 500 ARG B 321 98.85 16.39 REMARK 500 TYR B 328 -102.22 -152.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 331 GLU B 332 -147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-013012 RELATED DB: TARGETTRACK DBREF 4E3E A 2 353 UNP A9WC34 A9WC34_CHLAA 1 352 DBREF 4E3E B 2 353 UNP A9WC34 A9WC34_CHLAA 1 352 SEQRES 1 A 352 MSE SER ALA LYS THR ASN PRO GLY ASN PHE PHE GLU ASP SEQRES 2 A 352 PHE ARG LEU GLY GLN THR ILE VAL HIS ALA THR PRO ARG SEQRES 3 A 352 THR ILE THR GLU GLY ASP VAL ALA LEU TYR THR SER LEU SEQRES 4 A 352 TYR GLY SER ARG PHE ALA LEU THR SER SER THR PRO PHE SEQRES 5 A 352 ALA GLN SER LEU GLY LEU GLU ARG ALA PRO ILE ASP SER SEQRES 6 A 352 LEU LEU VAL PHE HIS ILE VAL PHE GLY LYS THR VAL PRO SEQRES 7 A 352 ASP ILE SER LEU ASN ALA ILE ALA ASN LEU GLY TYR ALA SEQRES 8 A 352 GLY GLY ARG PHE GLY ALA VAL VAL TYR PRO GLY ASP THR SEQRES 9 A 352 LEU SER THR THR SER LYS VAL ILE GLY LEU ARG GLN ASN SEQRES 10 A 352 LYS ASP GLY LYS THR GLY VAL VAL TYR VAL HIS SER VAL SEQRES 11 A 352 GLY VAL ASN GLN TRP ASP GLU VAL VAL LEU GLU TYR ILE SEQRES 12 A 352 ARG TRP VAL MSE VAL ARG LYS ARG ASP PRO ASN ALA PRO SEQRES 13 A 352 ALA PRO GLU THR VAL VAL PRO ASP LEU PRO ASP SER VAL SEQRES 14 A 352 PRO VAL THR ASP LEU THR VAL PRO TYR THR VAL SER ALA SEQRES 15 A 352 ALA ASN TYR ASN LEU ALA HIS ALA GLY SER ASN TYR LEU SEQRES 16 A 352 TRP ASP ASP TYR GLU VAL GLY GLU LYS ILE ASP HIS VAL SEQRES 17 A 352 ASP GLY VAL THR ILE GLU GLU ALA GLU HIS MSE GLN ALA SEQRES 18 A 352 THR ARG LEU TYR GLN ASN THR ALA ARG VAL HIS PHE ASN SEQRES 19 A 352 LEU HIS VAL GLU ARG GLU GLY ARG PHE GLY ARG ARG ILE SEQRES 20 A 352 VAL TYR GLY GLY HIS ILE ILE SER LEU ALA ARG SER LEU SEQRES 21 A 352 SER PHE ASN GLY LEU ALA ASN ALA LEU SER ILE ALA ALA SEQRES 22 A 352 ILE ASN SER GLY ARG HIS THR ASN PRO SER PHE ALA GLY SEQRES 23 A 352 ASP THR ILE TYR ALA TRP SER GLU ILE LEU ALA LYS MSE SEQRES 24 A 352 ALA ILE PRO GLY ARG THR ASP ILE GLY ALA LEU ARG VAL SEQRES 25 A 352 ARG THR VAL ALA THR LYS ASP ARG PRO CYS HIS ASP PHE SEQRES 26 A 352 PRO TYR ARG ASP ALA GLU GLY ASN TYR ASP PRO ALA VAL SEQRES 27 A 352 VAL LEU ASP PHE ASP TYR THR VAL LEU MSE PRO ARG ARG SEQRES 28 A 352 GLY SEQRES 1 B 352 MSE SER ALA LYS THR ASN PRO GLY ASN PHE PHE GLU ASP SEQRES 2 B 352 PHE ARG LEU GLY GLN THR ILE VAL HIS ALA THR PRO ARG SEQRES 3 B 352 THR ILE THR GLU GLY ASP VAL ALA LEU TYR THR SER LEU SEQRES 4 B 352 TYR GLY SER ARG PHE ALA LEU THR SER SER THR PRO PHE SEQRES 5 B 352 ALA GLN SER LEU GLY LEU GLU ARG ALA PRO ILE ASP SER SEQRES 6 B 352 LEU LEU VAL PHE HIS ILE VAL PHE GLY LYS THR VAL PRO SEQRES 7 B 352 ASP ILE SER LEU ASN ALA ILE ALA ASN LEU GLY TYR ALA SEQRES 8 B 352 GLY GLY ARG PHE GLY ALA VAL VAL TYR PRO GLY ASP THR SEQRES 9 B 352 LEU SER THR THR SER LYS VAL ILE GLY LEU ARG GLN ASN SEQRES 10 B 352 LYS ASP GLY LYS THR GLY VAL VAL TYR VAL HIS SER VAL SEQRES 11 B 352 GLY VAL ASN GLN TRP ASP GLU VAL VAL LEU GLU TYR ILE SEQRES 12 B 352 ARG TRP VAL MSE VAL ARG LYS ARG ASP PRO ASN ALA PRO SEQRES 13 B 352 ALA PRO GLU THR VAL VAL PRO ASP LEU PRO ASP SER VAL SEQRES 14 B 352 PRO VAL THR ASP LEU THR VAL PRO TYR THR VAL SER ALA SEQRES 15 B 352 ALA ASN TYR ASN LEU ALA HIS ALA GLY SER ASN TYR LEU SEQRES 16 B 352 TRP ASP ASP TYR GLU VAL GLY GLU LYS ILE ASP HIS VAL SEQRES 17 B 352 ASP GLY VAL THR ILE GLU GLU ALA GLU HIS MSE GLN ALA SEQRES 18 B 352 THR ARG LEU TYR GLN ASN THR ALA ARG VAL HIS PHE ASN SEQRES 19 B 352 LEU HIS VAL GLU ARG GLU GLY ARG PHE GLY ARG ARG ILE SEQRES 20 B 352 VAL TYR GLY GLY HIS ILE ILE SER LEU ALA ARG SER LEU SEQRES 21 B 352 SER PHE ASN GLY LEU ALA ASN ALA LEU SER ILE ALA ALA SEQRES 22 B 352 ILE ASN SER GLY ARG HIS THR ASN PRO SER PHE ALA GLY SEQRES 23 B 352 ASP THR ILE TYR ALA TRP SER GLU ILE LEU ALA LYS MSE SEQRES 24 B 352 ALA ILE PRO GLY ARG THR ASP ILE GLY ALA LEU ARG VAL SEQRES 25 B 352 ARG THR VAL ALA THR LYS ASP ARG PRO CYS HIS ASP PHE SEQRES 26 B 352 PRO TYR ARG ASP ALA GLU GLY ASN TYR ASP PRO ALA VAL SEQRES 27 B 352 VAL LEU ASP PHE ASP TYR THR VAL LEU MSE PRO ARG ARG SEQRES 28 B 352 GLY MODRES 4E3E MSE A 148 MET SELENOMETHIONINE MODRES 4E3E MSE A 220 MET SELENOMETHIONINE MODRES 4E3E MSE A 300 MET SELENOMETHIONINE MODRES 4E3E MSE A 349 MET SELENOMETHIONINE MODRES 4E3E MSE B 148 MET SELENOMETHIONINE MODRES 4E3E MSE B 220 MET SELENOMETHIONINE MODRES 4E3E MSE B 300 MET SELENOMETHIONINE MODRES 4E3E MSE B 349 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE A 220 8 HET MSE A 300 8 HET MSE A 349 8 HET MSE B 148 8 HET MSE B 220 8 HET MSE B 300 8 HET MSE B 349 8 HET SO4 A 500 5 HET SO4 B 500 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *480(H2 O) HELIX 1 1 PHE A 11 PHE A 15 5 5 HELIX 2 2 THR A 30 GLY A 42 1 13 HELIX 3 3 PHE A 45 SER A 50 1 6 HELIX 4 4 SER A 50 LEU A 57 1 8 HELIX 5 5 ASP A 65 SER A 82 1 18 HELIX 6 6 PRO A 171 LEU A 175 5 5 HELIX 7 7 SER A 182 TYR A 186 5 5 HELIX 8 8 ASN A 187 GLY A 192 1 6 HELIX 9 9 LEU A 196 TYR A 200 5 5 HELIX 10 10 GLU A 215 TYR A 226 1 12 HELIX 11 11 ALA A 230 PHE A 234 5 5 HELIX 12 12 ASN A 235 ARG A 240 1 6 HELIX 13 13 TYR A 250 ALA A 267 1 18 HELIX 14 14 PHE B 11 PHE B 15 5 5 HELIX 15 15 THR B 30 GLY B 42 1 13 HELIX 16 16 PHE B 45 SER B 50 1 6 HELIX 17 17 SER B 50 LEU B 57 1 8 HELIX 18 18 ASP B 65 SER B 82 1 18 HELIX 19 19 PRO B 171 LEU B 175 5 5 HELIX 20 20 SER B 182 TYR B 186 5 5 HELIX 21 21 ASN B 187 GLY B 192 1 6 HELIX 22 22 LEU B 196 TYR B 200 5 5 HELIX 23 23 GLU B 215 TYR B 226 1 12 HELIX 24 24 ALA B 230 PHE B 234 5 5 HELIX 25 25 ASN B 235 ARG B 240 1 6 HELIX 26 26 TYR B 250 ALA B 267 1 18 SHEET 1 A10 THR A 20 VAL A 22 0 SHEET 2 A10 THR A 105 GLN A 117 -1 O SER A 110 N ILE A 21 SHEET 3 A10 THR A 123 VAL A 133 -1 O VAL A 125 N ARG A 116 SHEET 4 A10 VAL A 139 ARG A 150 -1 O VAL A 149 N GLY A 124 SHEET 5 A10 ALA A 85 PHE A 96 -1 N ILE A 86 O MSE A 148 SHEET 6 A10 SER A 271 ARG A 279 -1 O ILE A 275 N GLY A 94 SHEET 7 A10 VAL A 339 PRO A 350 -1 O THR A 346 N ALA A 273 SHEET 8 A10 ILE A 308 LYS A 319 -1 N VAL A 313 O TYR A 345 SHEET 9 A10 THR A 289 ALA A 301 -1 N TRP A 293 O VAL A 316 SHEET 10 A10 LYS A 205 ASP A 207 -1 N ILE A 206 O SER A 294 SHEET 1 B10 ARG A 27 THR A 28 0 SHEET 2 B10 THR A 105 GLN A 117 -1 O LEU A 106 N ARG A 27 SHEET 3 B10 THR A 123 VAL A 133 -1 O VAL A 125 N ARG A 116 SHEET 4 B10 VAL A 139 ARG A 150 -1 O VAL A 149 N GLY A 124 SHEET 5 B10 ALA A 85 PHE A 96 -1 N ILE A 86 O MSE A 148 SHEET 6 B10 SER A 271 ARG A 279 -1 O ILE A 275 N GLY A 94 SHEET 7 B10 VAL A 339 PRO A 350 -1 O THR A 346 N ALA A 273 SHEET 8 B10 ILE A 308 LYS A 319 -1 N VAL A 313 O TYR A 345 SHEET 9 B10 THR A 289 ALA A 301 -1 N TRP A 293 O VAL A 316 SHEET 10 B10 VAL A 212 THR A 213 -1 N VAL A 212 O ILE A 290 SHEET 1 C10 THR B 20 VAL B 22 0 SHEET 2 C10 THR B 105 GLN B 117 -1 O SER B 110 N ILE B 21 SHEET 3 C10 THR B 123 VAL B 133 -1 O VAL B 125 N ARG B 116 SHEET 4 C10 VAL B 139 ARG B 150 -1 O VAL B 149 N GLY B 124 SHEET 5 C10 ALA B 85 PHE B 96 -1 N ILE B 86 O MSE B 148 SHEET 6 C10 SER B 271 ARG B 279 -1 O ILE B 275 N GLY B 94 SHEET 7 C10 VAL B 339 PRO B 350 -1 O ASP B 344 N SER B 277 SHEET 8 C10 ILE B 308 LYS B 319 -1 N VAL B 313 O TYR B 345 SHEET 9 C10 THR B 289 ALA B 301 -1 N TRP B 293 O VAL B 316 SHEET 10 C10 LYS B 205 ASP B 207 -1 N ILE B 206 O SER B 294 SHEET 1 D10 ARG B 27 THR B 28 0 SHEET 2 D10 THR B 105 GLN B 117 -1 O LEU B 106 N ARG B 27 SHEET 3 D10 THR B 123 VAL B 133 -1 O VAL B 125 N ARG B 116 SHEET 4 D10 VAL B 139 ARG B 150 -1 O VAL B 149 N GLY B 124 SHEET 5 D10 ALA B 85 PHE B 96 -1 N ILE B 86 O MSE B 148 SHEET 6 D10 SER B 271 ARG B 279 -1 O ILE B 275 N GLY B 94 SHEET 7 D10 VAL B 339 PRO B 350 -1 O ASP B 344 N SER B 277 SHEET 8 D10 ILE B 308 LYS B 319 -1 N VAL B 313 O TYR B 345 SHEET 9 D10 THR B 289 ALA B 301 -1 N TRP B 293 O VAL B 316 SHEET 10 D10 VAL B 212 THR B 213 -1 N VAL B 212 O ILE B 290 SSBOND 1 CYS A 323 CYS B 323 1555 2555 2.37 LINK C VAL A 147 N MSE A 148 1555 1555 1.32 LINK C MSE A 148 N VAL A 149 1555 1555 1.33 LINK C HIS A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N GLN A 221 1555 1555 1.33 LINK C LYS A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N ALA A 301 1555 1555 1.34 LINK C LEU A 348 N MSE A 349 1555 1555 1.34 LINK C MSE A 349 N PRO A 350 1555 1555 1.35 LINK C VAL B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N VAL B 149 1555 1555 1.33 LINK C HIS B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N GLN B 221 1555 1555 1.33 LINK C LYS B 299 N MSE B 300 1555 1555 1.33 LINK C MSE B 300 N ALA B 301 1555 1555 1.33 LINK C LEU B 348 N MSE B 349 1555 1555 1.33 LINK C MSE B 349 N PRO B 350 1555 1555 1.35 SITE 1 AC1 3 ARG A 116 ASN A 118 LYS A 119 SITE 1 AC2 3 ARG B 116 ASN B 118 LYS B 119 CRYST1 133.438 133.438 170.798 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007494 0.004327 0.000000 0.00000 SCALE2 0.000000 0.008653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005855 0.00000