HEADER HYDROLASE/HYDROLASE INHIBITOR 09-MAR-12 4E3J TITLE CRYSTAL STRUCTURE OF AMPC BETA-LACTAMASE IN COMPLEX WITH A DESIGNED 4- TITLE 2 TETRAZOLYL BENZENE SULFONAMIDE BORONIC ACID INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, CEPHALOSPORINASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.EIDAM,B.K.SHOICHET REVDAT 4 16-OCT-24 4E3J 1 REMARK REVDAT 3 13-SEP-23 4E3J 1 REMARK LINK REVDAT 2 07-NOV-12 4E3J 1 JRNL REVDAT 1 26-SEP-12 4E3J 0 JRNL AUTH O.EIDAM,C.ROMAGNOLI,G.DALMASSO,S.BARELIER,E.CASELLI, JRNL AUTH 2 R.BONNET,B.K.SHOICHET,F.PRATI JRNL TITL FRAGMENT-GUIDED DESIGN OF SUBNANOMOLAR BETA-LACTAMASE JRNL TITL 2 INHIBITORS ACTIVE IN VIVO. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 17448 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23043117 JRNL DOI 10.1073/PNAS.1208337109 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 68932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4936 - 4.7111 0.98 3910 142 0.1600 0.1939 REMARK 3 2 4.7111 - 3.7418 0.97 3764 168 0.1323 0.1562 REMARK 3 3 3.7418 - 3.2695 0.95 3707 132 0.1616 0.2126 REMARK 3 4 3.2695 - 2.9709 0.98 3753 164 0.1843 0.2275 REMARK 3 5 2.9709 - 2.7581 0.98 3795 162 0.1868 0.2357 REMARK 3 6 2.7581 - 2.5956 0.98 3768 152 0.1937 0.1997 REMARK 3 7 2.5956 - 2.4657 0.99 3817 142 0.1819 0.2584 REMARK 3 8 2.4657 - 2.3584 0.99 3820 145 0.1800 0.2237 REMARK 3 9 2.3584 - 2.2676 0.98 3758 144 0.1874 0.2528 REMARK 3 10 2.2676 - 2.1894 0.92 3557 114 0.1935 0.2589 REMARK 3 11 2.1894 - 2.1210 0.98 3761 173 0.1791 0.2147 REMARK 3 12 2.1210 - 2.0603 0.94 3628 160 0.2008 0.2577 REMARK 3 13 2.0603 - 2.0061 0.96 3686 120 0.1935 0.2609 REMARK 3 14 2.0061 - 1.9572 0.96 3643 154 0.1971 0.2216 REMARK 3 15 1.9572 - 1.9127 0.91 3510 123 0.2466 0.2894 REMARK 3 16 1.9127 - 1.8720 0.90 3507 94 0.2675 0.3119 REMARK 3 17 1.8720 - 1.8346 0.92 3550 123 0.2585 0.3063 REMARK 3 18 1.8346 - 1.7999 0.90 3439 147 0.2475 0.2992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 38.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59110 REMARK 3 B22 (A**2) : -5.94870 REMARK 3 B33 (A**2) : 2.35750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.65190 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5686 REMARK 3 ANGLE : 1.306 7799 REMARK 3 CHIRALITY : 0.090 852 REMARK 3 PLANARITY : 0.007 1001 REMARK 3 DIHEDRAL : 15.425 2027 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:90) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0758 -7.7918 22.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.0923 REMARK 3 T33: 0.0600 T12: -0.0206 REMARK 3 T13: 0.0026 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.2954 L22: 1.3827 REMARK 3 L33: 0.8604 L12: 0.6095 REMARK 3 L13: -0.2848 L23: -0.1798 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.1866 S13: -0.0046 REMARK 3 S21: 0.1523 S22: -0.0727 S23: 0.0509 REMARK 3 S31: 0.1571 S32: -0.0250 S33: 0.0305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 91:182) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7961 8.7383 7.2995 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1084 REMARK 3 T33: 0.1155 T12: 0.0175 REMARK 3 T13: 0.0058 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.2408 L22: 2.1132 REMARK 3 L33: 1.4564 L12: 0.0207 REMARK 3 L13: -0.6474 L23: -0.2790 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.1119 S13: 0.0492 REMARK 3 S21: -0.2217 S22: -0.0210 S23: -0.1013 REMARK 3 S31: 0.0565 S32: 0.0090 S33: -0.0115 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7537 -2.1446 22.4135 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0674 REMARK 3 T33: 0.0388 T12: 0.0128 REMARK 3 T13: -0.0083 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.4359 L22: 1.6668 REMARK 3 L33: 1.1497 L12: 0.7387 REMARK 3 L13: -0.1866 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.2123 S13: -0.0190 REMARK 3 S21: 0.1947 S22: -0.1070 S23: -0.0602 REMARK 3 S31: 0.1400 S32: 0.0853 S33: 0.0326 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 4:66) REMARK 3 ORIGIN FOR THE GROUP (A): 83.7341 -13.4659 21.6183 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1821 REMARK 3 T33: 0.1271 T12: 0.0602 REMARK 3 T13: -0.0222 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.0524 L22: 1.9050 REMARK 3 L33: 1.3401 L12: -0.4799 REMARK 3 L13: 0.0894 L23: -0.2206 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0026 S13: -0.2644 REMARK 3 S21: -0.0263 S22: 0.0779 S23: -0.1434 REMARK 3 S31: 0.3358 S32: 0.2529 S33: -0.0598 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 67:182) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1363 9.0600 35.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.1641 REMARK 3 T33: 0.1141 T12: -0.0025 REMARK 3 T13: 0.0588 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.9096 L22: 1.4508 REMARK 3 L33: 1.3822 L12: -0.1902 REMARK 3 L13: -0.1462 L23: -0.1460 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.2361 S13: 0.0316 REMARK 3 S21: 0.4294 S22: 0.1524 S23: 0.2468 REMARK 3 S31: -0.1253 S32: 0.0357 S33: -0.1191 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 72.1275 -2.9977 23.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.1051 REMARK 3 T33: 0.0882 T12: -0.0173 REMARK 3 T13: -0.0056 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9031 L22: 1.6500 REMARK 3 L33: 1.3877 L12: -0.6647 REMARK 3 L13: -0.1475 L23: -0.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.0540 S13: -0.0265 REMARK 3 S21: 0.0214 S22: 0.0398 S23: 0.0551 REMARK 3 S31: 0.1027 S32: 0.1056 S33: -0.0413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68951 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.22000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 284 REMARK 465 ASN A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 ASP A 288 REMARK 465 ASN A 289 REMARK 465 LYS A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ASN A 279 CG OD1 ND2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 SER A 282 OG REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLN B 52 CD OE1 NE2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 239 CE NZ REMARK 470 ASP B 242 CG OD1 OD2 REMARK 470 ASN B 244 CG OD1 ND2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -60.71 -90.76 REMARK 500 VAL A 178 -60.69 -120.30 REMARK 500 TYR A 221 21.97 -158.48 REMARK 500 ALA A 307 122.03 -32.89 REMARK 500 ASN A 341 42.70 -100.18 REMARK 500 GLN B 35 45.84 37.27 REMARK 500 LYS B 126 -59.57 -133.19 REMARK 500 VAL B 178 -59.60 -126.99 REMARK 500 LEU B 216 18.52 56.88 REMARK 500 TYR B 221 17.93 -154.43 REMARK 500 ALA B 307 116.04 -36.93 REMARK 500 ASN B 341 43.34 -97.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0N4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0N4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E3I RELATED DB: PDB REMARK 900 RELATED ID: 4E3K RELATED DB: PDB REMARK 900 RELATED ID: 4E3L RELATED DB: PDB REMARK 900 RELATED ID: 4E3M RELATED DB: PDB REMARK 900 RELATED ID: 4E3N RELATED DB: PDB REMARK 900 RELATED ID: 4E3O RELATED DB: PDB DBREF 4E3J A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4E3J B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN HET 0N4 A 401 19 HET PO4 A 402 5 HET 0N4 B 401 19 HET PO4 B 402 5 HETNAM 0N4 [({[4-(1H-TETRAZOL-5-YL)PHENYL]SULFONYL}AMINO) HETNAM 2 0N4 METHYL]BORONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 0N4 2(C8 H10 B N5 O4 S) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *446(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TYR A 92 5 5 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 GLY A 222 1 7 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 PRO A 330 GLU A 333 5 4 HELIX 15 15 PRO A 345 GLN A 361 1 17 HELIX 16 16 PRO B 5 LYS B 24 1 20 HELIX 17 17 VAL B 65 ARG B 80 1 16 HELIX 18 18 PRO B 88 TRP B 93 1 6 HELIX 19 19 ALA B 98 ASN B 102 5 5 HELIX 20 20 THR B 105 THR B 111 1 7 HELIX 21 21 SER B 127 TRP B 138 1 12 HELIX 22 22 ALA B 151 VAL B 163 1 13 HELIX 23 23 SER B 169 VAL B 178 1 10 HELIX 24 24 PRO B 192 TYR B 199 5 8 HELIX 25 25 LEU B 216 GLY B 222 1 7 HELIX 26 26 THR B 226 LYS B 239 1 14 HELIX 27 27 PRO B 240 ILE B 243 5 4 HELIX 28 28 GLU B 245 GLN B 256 1 12 HELIX 29 29 ASN B 279 SER B 287 1 9 HELIX 30 30 ASP B 288 LEU B 293 1 6 HELIX 31 31 PRO B 330 GLU B 333 5 4 HELIX 32 32 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N TYR A 34 O LYS A 37 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 GLY A 323 ILE A 329 -1 N TYR A 325 O MET A 338 SHEET 6 A10 SER A 311 ALA A 318 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N TRP A 260 O GLN A 267 SHEET 10 A10 LYS A 299 THR A 305 -1 O THR A 305 N ARG A 258 SHEET 1 B 2 PHE A 60 GLU A 61 0 SHEET 2 B 2 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ALA B 46 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N TYR B 34 O LYS B 37 SHEET 4 E10 LEU B 334 ALA B 340 -1 O GLY B 335 N ILE B 33 SHEET 5 E10 GLY B 323 ILE B 329 -1 N ILE B 329 O LEU B 334 SHEET 6 E10 SER B 311 ALA B 318 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N LEU B 274 O TRP B 312 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O LYS B 207 N ARG B 204 LINK OG SER A 64 B03 0N4 A 401 1555 1555 1.45 LINK OG SER B 64 B03 0N4 B 401 1555 1555 1.44 CISPEP 1 TRP A 276 PRO A 277 0 1.18 CISPEP 2 THR A 302 PRO A 303 0 -1.86 CISPEP 3 TRP B 276 PRO B 277 0 1.67 CISPEP 4 THR B 302 PRO B 303 0 -0.88 SITE 1 AC1 11 SER A 64 LEU A 119 TYR A 150 ASN A 152 SITE 2 AC1 11 VAL A 211 SER A 212 ALA A 318 GLY A 320 SITE 3 AC1 11 HOH A 721 HOH A 723 HOH A 729 SITE 1 AC2 6 PHE A 41 THR A 42 HOH A 576 HOH A 603 SITE 2 AC2 6 GLY B 116 HOH B 556 SITE 1 AC3 12 SER B 64 GLN B 120 TYR B 150 ASN B 152 SITE 2 AC3 12 VAL B 211 SER B 212 ALA B 318 GLY B 320 SITE 3 AC3 12 HOH B 697 HOH B 698 HOH B 701 HOH B 705 SITE 1 AC4 5 SER A 129 ARG A 133 HIS A 186 HOH A 737 SITE 2 AC4 5 LYS B 290 CRYST1 118.440 76.540 97.740 90.00 116.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008443 0.000000 0.004279 0.00000 SCALE2 0.000000 0.013065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011470 0.00000