HEADER TRANSFERASE 14-MAR-12 4E5O TITLE CRYSTAL STRUCTURE OF MOUSE THYMIDYLATE SYNTHASE IN COMPLEX WITH DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TYMS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TX61-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIGDM4 KEYWDS PROTEIN-LIGAND COMPLEX, METHYLTRANSFERASE, NUCLEOTIDE BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DOWIERCIAL,A.JARMULA,W.RYPNIEWSKI,M.SOKOLOWSKA,T.FRACZYK,J.CIESLA, AUTHOR 2 W.RODE REVDAT 4 13-SEP-23 4E5O 1 REMARK REVDAT 3 07-MAR-18 4E5O 1 REMARK REVDAT 2 02-NOV-16 4E5O 1 JRNL REVDAT 1 18-APR-12 4E5O 0 SPRSDE 18-APR-12 4E5O 3IHH JRNL AUTH A.DOWIERCIAL,A.JARMULA,P.WILK,W.RYPNIEWSKI,M.KOWALSKA, JRNL AUTH 2 T.FRACZYK,J.CIESLA,W.RODE JRNL TITL MOUSE THYMIDYLATE SYNTHASE DOES NOT SHOW THE INACTIVE JRNL TITL 2 CONFORMATION, OBSERVED FOR THE HUMAN ENZYME JRNL REF STRUCT CHEM 2016 JRNL REFN ESSN 1572-9001 JRNL DOI 10.1007/S11224-016-0840-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.DOWIERCIAL,A.JARMULA,W.RYPNIEWSKI,M.SOKOLOWSKA,T.FRACZYK, REMARK 1 AUTH 2 J.CIESLA,W.RODE REMARK 1 TITL CRYSTAL STRUCTURES OF SUBSTRATE- AND SULFATE-BOUND MOUSE REMARK 1 TITL 2 THYMIDYLATE SYNTHASE REMARK 1 REF PTERIDINES V. 20 163 2009 REMARK 1 REFN ISSN 0933-4807 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 205349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.5140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 1472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.855 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 14419 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 19531 ; 1.956 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1726 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 706 ;36.482 ;23.612 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2475 ;15.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 105 ;19.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2040 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11088 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8533 ; 1.174 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13782 ; 1.861 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5886 ; 2.938 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5748 ; 4.221 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : SI(111) BENT CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 1RTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: K/NA TARTRATE, PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.17500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.17500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 GLU B 18 REMARK 465 ALA B 19 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 VAL C 3 REMARK 465 VAL C 4 REMARK 465 GLY C 5 REMARK 465 SER C 6 REMARK 465 GLU C 7 REMARK 465 LEU C 8 REMARK 465 GLN C 9 REMARK 465 SER C 10 REMARK 465 ASP C 11 REMARK 465 ALA C 12 REMARK 465 GLN C 13 REMARK 465 GLN C 14 REMARK 465 LEU C 15 REMARK 465 SER C 16 REMARK 465 ALA C 17 REMARK 465 GLU C 18 REMARK 465 ALA C 19 REMARK 465 PRO C 20 REMARK 465 ILE C 301 REMARK 465 LYS C 302 REMARK 465 MET C 303 REMARK 465 GLU C 304 REMARK 465 MET C 305 REMARK 465 ALA C 306 REMARK 465 VAL C 307 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 VAL D 3 REMARK 465 VAL D 4 REMARK 465 GLY D 5 REMARK 465 SER D 6 REMARK 465 GLU D 7 REMARK 465 LEU D 8 REMARK 465 GLN D 9 REMARK 465 SER D 10 REMARK 465 ASP D 11 REMARK 465 ALA D 12 REMARK 465 GLN D 13 REMARK 465 GLN D 14 REMARK 465 LEU D 15 REMARK 465 SER D 16 REMARK 465 ALA D 17 REMARK 465 GLU D 18 REMARK 465 ALA D 19 REMARK 465 PRO D 20 REMARK 465 GLU D 304 REMARK 465 MET D 305 REMARK 465 ALA D 306 REMARK 465 VAL D 307 REMARK 465 MET E 1 REMARK 465 LEU E 2 REMARK 465 VAL E 3 REMARK 465 VAL E 4 REMARK 465 GLY E 5 REMARK 465 SER E 6 REMARK 465 GLU E 7 REMARK 465 LEU E 8 REMARK 465 GLN E 9 REMARK 465 SER E 10 REMARK 465 ASP E 11 REMARK 465 ALA E 12 REMARK 465 GLN E 13 REMARK 465 GLN E 14 REMARK 465 LEU E 15 REMARK 465 SER E 16 REMARK 465 ALA E 17 REMARK 465 GLU E 18 REMARK 465 ALA E 19 REMARK 465 ILE E 301 REMARK 465 LYS E 302 REMARK 465 MET E 303 REMARK 465 GLU E 304 REMARK 465 MET E 305 REMARK 465 ALA E 306 REMARK 465 VAL E 307 REMARK 465 MET F 1 REMARK 465 LEU F 2 REMARK 465 VAL F 3 REMARK 465 VAL F 4 REMARK 465 GLY F 5 REMARK 465 SER F 6 REMARK 465 GLU F 7 REMARK 465 LEU F 8 REMARK 465 GLN F 9 REMARK 465 SER F 10 REMARK 465 ASP F 11 REMARK 465 ALA F 12 REMARK 465 GLN F 13 REMARK 465 GLN F 14 REMARK 465 LEU F 15 REMARK 465 SER F 16 REMARK 465 ALA F 17 REMARK 465 GLU F 18 REMARK 465 ALA F 19 REMARK 465 PRO F 20 REMARK 465 THR F 300 REMARK 465 ILE F 301 REMARK 465 LYS F 302 REMARK 465 MET F 303 REMARK 465 GLU F 304 REMARK 465 MET F 305 REMARK 465 ALA F 306 REMARK 465 VAL F 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 659 O HOH A 778 1.60 REMARK 500 O HOH A 643 O HOH A 725 1.72 REMARK 500 O HOH B 702 O HOH B 915 1.73 REMARK 500 O HOH C 601 O HOH C 682 1.75 REMARK 500 OE1 GLU B 42 O HOH B 729 1.79 REMARK 500 O HOH C 602 O HOH C 874 1.85 REMARK 500 O HOH D 838 O HOH D 839 1.90 REMARK 500 CE2 PHE D 65 O HOH D 654 1.93 REMARK 500 CZ PHE D 65 O HOH D 654 1.98 REMARK 500 O HOH B 662 O HOH B 869 2.00 REMARK 500 O HOH B 906 O HOH B 911 2.03 REMARK 500 O HOH E 644 O HOH E 645 2.07 REMARK 500 OD1 ASN A 106 O HOH A 869 2.07 REMARK 500 O HOH C 813 O HOH C 875 2.09 REMARK 500 O HOH D 796 O HOH D 797 2.09 REMARK 500 O HOH B 897 O HOH B 898 2.09 REMARK 500 O HOH A 738 O HOH A 926 2.10 REMARK 500 OD1 ASN C 199 CD2 PHE D 39 2.11 REMARK 500 O HOH D 688 O HOH D 833 2.12 REMARK 500 OE2 GLU A 42 O HOH A 858 2.17 REMARK 500 CE2 PHE F 136 O HOH F 620 2.17 REMARK 500 O HOH B 760 O HOH B 841 2.17 REMARK 500 O HOH B 866 O HOH B 899 2.18 REMARK 500 O HOH F 746 O HOH F 747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 36 O HOH A 858 4545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 27 CE1 TYR A 27 CZ 0.078 REMARK 500 TYR A 207 CE1 TYR A 207 CZ 0.080 REMARK 500 GLU B 64 CB GLU B 64 CG -0.130 REMARK 500 TYR B 129 CZ TYR B 129 CE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 LEU A 181 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 283 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU B 215 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG D 134 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 117 53.28 -104.49 REMARK 500 VAL A 128 -159.92 -87.67 REMARK 500 HIS A 135 34.17 -145.78 REMARK 500 LYS A 141 -84.04 -110.36 REMARK 500 LYS A 141 -77.63 -117.22 REMARK 500 SER A 148 104.80 -34.58 REMARK 500 PHE B 117 52.48 -107.70 REMARK 500 HIS B 135 35.11 -145.80 REMARK 500 LYS B 141 -76.49 -109.52 REMARK 500 ASN B 165 68.81 -152.19 REMARK 500 PHE C 117 52.21 -102.44 REMARK 500 HIS C 135 29.10 -144.32 REMARK 500 LYS C 141 -79.62 -112.18 REMARK 500 ASP D 63 28.41 49.79 REMARK 500 PHE D 117 50.50 -106.00 REMARK 500 HIS D 135 31.35 -148.11 REMARK 500 LYS D 141 -81.60 -124.11 REMARK 500 HIS E 22 66.13 63.21 REMARK 500 TRP E 103 52.46 -114.49 REMARK 500 SER E 118 -88.76 -98.40 REMARK 500 ALA E 119 50.27 -90.10 REMARK 500 VAL E 128 -159.40 -73.65 REMARK 500 HIS E 135 50.88 -141.67 REMARK 500 LYS E 141 -84.43 -107.76 REMARK 500 VAL F 128 -156.39 -79.17 REMARK 500 HIS F 135 27.44 -143.54 REMARK 500 LYS F 141 -77.17 -120.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR D 300 ILE D 301 148.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP F 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IHI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THYMIDYLATE SYNTHASE DBREF 4E5O A 1 307 UNP P07607 TYSY_MOUSE 1 307 DBREF 4E5O B 1 307 UNP P07607 TYSY_MOUSE 1 307 DBREF 4E5O C 1 307 UNP P07607 TYSY_MOUSE 1 307 DBREF 4E5O D 1 307 UNP P07607 TYSY_MOUSE 1 307 DBREF 4E5O E 1 307 UNP P07607 TYSY_MOUSE 1 307 DBREF 4E5O F 1 307 UNP P07607 TYSY_MOUSE 1 307 SEQRES 1 A 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 A 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 A 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 A 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 A 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 A 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 A 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 A 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 A 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 A 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 A 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 A 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 A 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 A 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 A 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 A 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 A 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 A 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 A 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 A 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 A 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 A 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 A 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 A 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 B 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 B 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 B 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 B 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 B 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 B 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 B 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 B 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 B 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 B 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 B 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 B 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 B 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 B 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 B 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 B 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 B 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 B 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 B 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 B 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 B 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 B 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 B 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 B 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 C 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 C 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 C 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 C 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 C 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 C 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 C 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 C 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 C 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 C 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 C 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 C 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 C 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 C 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 C 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 C 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 C 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 C 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 C 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 C 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 C 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 C 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 C 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 C 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 D 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 D 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 D 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 D 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 D 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 D 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 D 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 D 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 D 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 D 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 D 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 D 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 D 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 D 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 D 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 D 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 D 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 D 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 D 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 D 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 D 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 D 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 D 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 D 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 E 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 E 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 E 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 E 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 E 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 E 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 E 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 E 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 E 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 E 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 E 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 E 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 E 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 E 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 E 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 E 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 E 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 E 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 E 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 E 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 E 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 E 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 E 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 E 307 THR ILE LYS MET GLU MET ALA VAL SEQRES 1 F 307 MET LEU VAL VAL GLY SER GLU LEU GLN SER ASP ALA GLN SEQRES 2 F 307 GLN LEU SER ALA GLU ALA PRO ARG HIS GLY GLU LEU GLN SEQRES 3 F 307 TYR LEU ARG GLN VAL GLU HIS ILE LEU ARG CYS GLY PHE SEQRES 4 F 307 LYS LYS GLU ASP ARG THR GLY THR GLY THR LEU SER VAL SEQRES 5 F 307 PHE GLY MET GLN ALA ARG TYR SER LEU ARG ASP GLU PHE SEQRES 6 F 307 PRO LEU LEU THR THR LYS ARG VAL PHE TRP LYS GLY VAL SEQRES 7 F 307 LEU GLU GLU LEU LEU TRP PHE ILE LYS GLY SER THR ASN SEQRES 8 F 307 ALA LYS GLU LEU SER SER LYS GLY VAL ARG ILE TRP ASP SEQRES 9 F 307 ALA ASN GLY SER ARG ASP PHE LEU ASP SER LEU GLY PHE SEQRES 10 F 307 SER ALA ARG GLN GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 11 F 307 PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR LYS ASP MET SEQRES 12 F 307 ASP SER ASP TYR SER GLY GLN GLY VAL ASP GLN LEU GLN SEQRES 13 F 307 LYS VAL ILE ASP THR ILE LYS THR ASN PRO ASP ASP ARG SEQRES 14 F 307 ARG ILE ILE MET CYS ALA TRP ASN PRO LYS ASP LEU PRO SEQRES 15 F 307 LEU MET ALA LEU PRO PRO CYS HIS ALA LEU CYS GLN PHE SEQRES 16 F 307 TYR VAL VAL ASN GLY GLU LEU SER CYS GLN LEU TYR GLN SEQRES 17 F 307 ARG SER GLY ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 18 F 307 ALA SER TYR ALA LEU LEU THR TYR MET ILE ALA HIS ILE SEQRES 19 F 307 THR GLY LEU GLN PRO GLY ASP PHE VAL HIS THR LEU GLY SEQRES 20 F 307 ASP ALA HIS ILE TYR LEU ASN HIS ILE GLU PRO LEU LYS SEQRES 21 F 307 ILE GLN LEU GLN ARG GLU PRO ARG PRO PHE PRO LYS LEU SEQRES 22 F 307 LYS ILE LEU ARG LYS VAL GLU THR ILE ASP ASP PHE LYS SEQRES 23 F 307 VAL GLU ASP PHE GLN ILE GLU GLY TYR ASN PRO HIS PRO SEQRES 24 F 307 THR ILE LYS MET GLU MET ALA VAL HET UMP A 501 20 HET UMP B 501 20 HET UMP C 501 20 HET BU1 C 502 6 HET BU1 C 503 6 HET BU1 C 504 6 HET UMP D 501 20 HET UMP E 501 20 HET UMP F 501 20 HET UMP F 502 20 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM BU1 1,4-BUTANEDIOL HETSYN UMP DUMP FORMUL 7 UMP 7(C9 H13 N2 O8 P) FORMUL 10 BU1 3(C4 H10 O2) FORMUL 17 HOH *1472(H2 O) HELIX 1 1 GLY A 23 GLY A 38 1 16 HELIX 2 2 PHE A 74 LYS A 87 1 14 HELIX 3 3 ASN A 91 SER A 97 1 7 HELIX 4 4 ASP A 104 GLY A 107 5 4 HELIX 5 5 SER A 108 LEU A 115 1 8 HELIX 6 6 VAL A 128 PHE A 136 1 9 HELIX 7 7 ASP A 153 ASN A 165 1 13 HELIX 8 8 ASP A 180 MET A 184 5 5 HELIX 9 9 GLY A 216 GLY A 236 1 21 HELIX 10 10 HIS A 255 LEU A 263 1 9 HELIX 11 11 THR A 281 PHE A 285 5 5 HELIX 12 12 LYS A 286 GLU A 288 5 3 HELIX 13 13 GLY B 23 GLY B 38 1 16 HELIX 14 14 PHE B 74 LYS B 87 1 14 HELIX 15 15 ASN B 91 SER B 97 1 7 HELIX 16 16 ASP B 104 GLY B 107 5 4 HELIX 17 17 SER B 108 LEU B 115 1 8 HELIX 18 18 VAL B 128 PHE B 136 1 9 HELIX 19 19 ASP B 153 ASN B 165 1 13 HELIX 20 20 ASP B 180 MET B 184 5 5 HELIX 21 21 GLY B 216 GLY B 236 1 21 HELIX 22 22 HIS B 255 GLN B 264 1 10 HELIX 23 23 THR B 281 PHE B 285 5 5 HELIX 24 24 LYS B 286 GLU B 288 5 3 HELIX 25 25 GLY C 23 GLY C 38 1 16 HELIX 26 26 PHE C 74 LYS C 87 1 14 HELIX 27 27 ASN C 91 SER C 97 1 7 HELIX 28 28 ASP C 104 GLY C 107 5 4 HELIX 29 29 SER C 108 LEU C 115 1 8 HELIX 30 30 VAL C 128 PHE C 136 1 9 HELIX 31 31 ASP C 153 ASN C 165 1 13 HELIX 32 32 ASP C 180 MET C 184 5 5 HELIX 33 33 GLY C 216 GLY C 236 1 21 HELIX 34 34 HIS C 255 LEU C 263 1 9 HELIX 35 35 THR C 281 PHE C 285 5 5 HELIX 36 36 LYS C 286 GLU C 288 5 3 HELIX 37 37 GLY D 23 GLY D 38 1 16 HELIX 38 38 PHE D 74 LYS D 87 1 14 HELIX 39 39 ASN D 91 SER D 97 1 7 HELIX 40 40 TRP D 103 SER D 108 1 6 HELIX 41 41 SER D 108 LEU D 115 1 8 HELIX 42 42 VAL D 128 PHE D 136 1 9 HELIX 43 43 ASP D 153 ASN D 165 1 13 HELIX 44 44 ASP D 180 MET D 184 5 5 HELIX 45 45 GLY D 216 GLY D 236 1 21 HELIX 46 46 HIS D 255 LEU D 263 1 9 HELIX 47 47 THR D 281 PHE D 285 5 5 HELIX 48 48 LYS D 286 GLU D 288 5 3 HELIX 49 49 GLY E 23 GLY E 38 1 16 HELIX 50 50 PHE E 74 LYS E 87 1 14 HELIX 51 51 ASN E 91 SER E 97 1 7 HELIX 52 52 TRP E 103 SER E 108 1 6 HELIX 53 53 SER E 108 GLY E 116 1 9 HELIX 54 54 VAL E 128 PHE E 136 1 9 HELIX 55 55 ASP E 153 ASN E 165 1 13 HELIX 56 56 ASP E 180 MET E 184 5 5 HELIX 57 57 GLY E 216 THR E 235 1 20 HELIX 58 58 HIS E 255 GLN E 264 1 10 HELIX 59 59 THR E 281 PHE E 285 5 5 HELIX 60 60 LYS E 286 GLU E 288 5 3 HELIX 61 61 GLY F 23 GLY F 38 1 16 HELIX 62 62 PHE F 74 LYS F 87 1 14 HELIX 63 63 ASN F 91 SER F 97 1 7 HELIX 64 64 TRP F 103 SER F 108 1 6 HELIX 65 65 SER F 108 GLY F 116 1 9 HELIX 66 66 VAL F 128 PHE F 136 1 9 HELIX 67 67 ASP F 153 ASN F 165 1 13 HELIX 68 68 ASP F 180 MET F 184 5 5 HELIX 69 69 GLY F 216 GLY F 236 1 21 HELIX 70 70 HIS F 255 LEU F 263 1 9 HELIX 71 71 THR F 281 PHE F 285 5 5 HELIX 72 72 LYS F 286 GLU F 288 5 3 SHEET 1 A 6 PHE A 39 LYS A 41 0 SHEET 2 A 6 THR A 49 SER A 60 -1 O THR A 49 N LYS A 41 SHEET 3 A 6 GLN A 238 TYR A 252 -1 O PHE A 242 N TYR A 59 SHEET 4 A 6 GLU A 201 ASP A 212 1 N CYS A 204 O VAL A 243 SHEET 5 A 6 HIS A 190 VAL A 198 -1 N TYR A 196 O SER A 203 SHEET 6 A 6 ILE A 172 CYS A 174 -1 N MET A 173 O CYS A 193 SHEET 1 B 2 LYS A 272 ILE A 275 0 SHEET 2 B 2 PHE A 290 GLU A 293 -1 O GLU A 293 N LYS A 272 SHEET 1 C 6 PHE B 39 LYS B 41 0 SHEET 2 C 6 THR B 49 SER B 60 -1 O THR B 49 N LYS B 41 SHEET 3 C 6 GLN B 238 TYR B 252 -1 O ALA B 249 N VAL B 52 SHEET 4 C 6 GLU B 201 ASP B 212 1 N LEU B 202 O GLY B 240 SHEET 5 C 6 HIS B 190 VAL B 198 -1 N TYR B 196 O SER B 203 SHEET 6 C 6 ILE B 172 CYS B 174 -1 N MET B 173 O CYS B 193 SHEET 1 D 2 LYS B 272 ILE B 275 0 SHEET 2 D 2 PHE B 290 GLU B 293 -1 O GLU B 293 N LYS B 272 SHEET 1 E 6 PHE C 39 LYS C 41 0 SHEET 2 E 6 THR C 49 SER C 60 -1 O THR C 49 N LYS C 41 SHEET 3 E 6 GLN C 238 TYR C 252 -1 O PHE C 242 N TYR C 59 SHEET 4 E 6 GLU C 201 ASP C 212 1 N LEU C 202 O GLY C 240 SHEET 5 E 6 HIS C 190 VAL C 198 -1 N LEU C 192 O TYR C 207 SHEET 6 E 6 ILE C 172 CYS C 174 -1 N MET C 173 O CYS C 193 SHEET 1 F 2 LYS C 272 ILE C 275 0 SHEET 2 F 2 PHE C 290 GLU C 293 -1 O GLN C 291 N LYS C 274 SHEET 1 G 6 PHE D 39 LYS D 41 0 SHEET 2 G 6 THR D 49 SER D 60 -1 O THR D 49 N LYS D 41 SHEET 3 G 6 GLN D 238 TYR D 252 -1 O PHE D 242 N TYR D 59 SHEET 4 G 6 GLU D 201 ASP D 212 1 N LEU D 202 O GLY D 240 SHEET 5 G 6 HIS D 190 VAL D 198 -1 N LEU D 192 O TYR D 207 SHEET 6 G 6 ILE D 172 CYS D 174 -1 N MET D 173 O CYS D 193 SHEET 1 H 2 LYS D 272 ILE D 275 0 SHEET 2 H 2 PHE D 290 GLU D 293 -1 O GLN D 291 N LYS D 274 SHEET 1 I 6 PHE E 39 LYS E 41 0 SHEET 2 I 6 THR E 49 SER E 60 -1 O SER E 51 N PHE E 39 SHEET 3 I 6 GLN E 238 TYR E 252 -1 O PHE E 242 N TYR E 59 SHEET 4 I 6 GLU E 201 ASP E 212 1 N CYS E 204 O VAL E 243 SHEET 5 I 6 HIS E 190 VAL E 198 -1 N TYR E 196 O SER E 203 SHEET 6 I 6 ILE E 172 CYS E 174 -1 N MET E 173 O CYS E 193 SHEET 1 J 2 LYS E 272 ILE E 275 0 SHEET 2 J 2 PHE E 290 GLU E 293 -1 O GLN E 291 N LYS E 274 SHEET 1 K 6 PHE F 39 LYS F 41 0 SHEET 2 K 6 THR F 49 SER F 60 -1 O SER F 51 N PHE F 39 SHEET 3 K 6 GLN F 238 TYR F 252 -1 O PHE F 242 N TYR F 59 SHEET 4 K 6 GLU F 201 ASP F 212 1 N LEU F 202 O GLY F 240 SHEET 5 K 6 HIS F 190 VAL F 198 -1 N TYR F 196 O SER F 203 SHEET 6 K 6 ILE F 172 CYS F 174 -1 N MET F 173 O CYS F 193 SHEET 1 L 2 LYS F 272 ILE F 275 0 SHEET 2 L 2 PHE F 290 GLU F 293 -1 O GLU F 293 N LYS F 272 SITE 1 AC1 17 ARG A 44 CYS A 189 HIS A 190 GLN A 208 SITE 2 AC1 17 ARG A 209 SER A 210 GLY A 211 ASP A 212 SITE 3 AC1 17 GLY A 216 ASN A 220 HIS A 250 TYR A 252 SITE 4 AC1 17 HOH A 603 HOH A 682 HOH A 815 ARG B 169 SITE 5 AC1 17 ARG B 170 SITE 1 AC2 17 ARG A 169 ARG A 170 ARG B 44 CYS B 189 SITE 2 AC2 17 HIS B 190 GLN B 208 ARG B 209 SER B 210 SITE 3 AC2 17 GLY B 211 ASP B 212 GLY B 216 ASN B 220 SITE 4 AC2 17 HIS B 250 TYR B 252 HOH B 604 HOH B 656 SITE 5 AC2 17 HOH B 738 SITE 1 AC3 17 ARG C 44 CYS C 189 HIS C 190 GLN C 208 SITE 2 AC3 17 ARG C 209 SER C 210 GLY C 211 ASP C 212 SITE 3 AC3 17 GLY C 216 ASN C 220 HIS C 250 TYR C 252 SITE 4 AC3 17 HOH C 602 HOH C 613 HOH C 678 ARG D 169 SITE 5 AC3 17 ARG D 170 SITE 1 AC4 2 SER C 148 HOH C 735 SITE 1 AC5 5 LYS C 87 GLY C 88 HIS C 135 HOH C 698 SITE 2 AC5 5 HOH C 736 SITE 1 AC6 5 GLY C 149 GLY C 151 HOH C 675 HOH C 780 SITE 2 AC6 5 HOH C 781 SITE 1 AC7 16 ARG C 169 ARG C 170 ARG D 44 CYS D 189 SITE 2 AC7 16 HIS D 190 GLN D 208 ARG D 209 SER D 210 SITE 3 AC7 16 GLY D 211 ASP D 212 GLY D 216 ASN D 220 SITE 4 AC7 16 HIS D 250 TYR D 252 HOH D 615 HOH D 688 SITE 1 AC8 17 ARG E 44 CYS E 189 HIS E 190 GLN E 208 SITE 2 AC8 17 ARG E 209 SER E 210 GLY E 211 ASP E 212 SITE 3 AC8 17 GLY E 216 ASN E 220 HIS E 250 TYR E 252 SITE 4 AC8 17 HOH E 637 HOH E 716 ARG F 169 ARG F 170 SITE 5 AC8 17 HOH F 603 SITE 1 AC9 18 ARG E 169 ARG E 170 ARG F 44 CYS F 189 SITE 2 AC9 18 HIS F 190 GLN F 208 ARG F 209 SER F 210 SITE 3 AC9 18 GLY F 211 ASP F 212 GLY F 216 ASN F 220 SITE 4 AC9 18 HIS F 250 TYR F 252 UMP F 502 HOH F 609 SITE 5 AC9 18 HOH F 696 HOH F 775 SITE 1 BC1 13 GLU F 81 PHE F 85 ILE F 102 TRP F 103 SITE 2 BC1 13 HIS F 190 UMP F 501 HOH F 631 HOH F 692 SITE 3 BC1 13 HOH F 704 HOH F 750 HOH F 774 HOH F 775 SITE 4 BC1 13 HOH F 776 CRYST1 160.350 88.540 136.760 90.00 95.99 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006236 0.000000 0.000654 0.00000 SCALE2 0.000000 0.011294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007352 0.00000