data_4E72 # _entry.id 4E72 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E72 pdb_00004e72 10.2210/pdb4e72/pdb RCSB RCSB071250 ? ? WWPDB D_1000071250 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417344 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4E72 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (PA4972) from Pseudomonas aeruginosa PAO1 at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4E72 _cell.length_a 102.840 _cell.length_b 51.890 _cell.length_c 40.860 _cell.angle_alpha 90.000 _cell.angle_beta 98.250 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E72 _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 25618.541 1 ? ? ? ? 2 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GKPGLDDPLPTERLASEHLKPGCQGEQCPLVNIDTLKFPDEPQLDPIVERALLE(MSE)TRENNETPLPASLAAYERQFL DSAEPGWSSYLQAKVREQHDGLVIIELSSYLFTGGAHG(MSE)PGRGFINYDRRQHKVLSLQD(MSE)LVPGQEEAFWKQ AELAHKAWLLANKLDQDADFQKTWPFQRTPHVALTFGAVTLKYDAYSIAPYSYAHPELKIPYPRLNGIVKPNLFPGRG ; _entity_poly.pdbx_seq_one_letter_code_can ;GKPGLDDPLPTERLASEHLKPGCQGEQCPLVNIDTLKFPDEPQLDPIVERALLEMTRENNETPLPASLAAYERQFLDSAE PGWSSYLQAKVREQHDGLVIIELSSYLFTGGAHGMPGRGFINYDRRQHKVLSLQDMLVPGQEEAFWKQAELAHKAWLLAN KLDQDADFQKTWPFQRTPHVALTFGAVTLKYDAYSIAPYSYAHPELKIPYPRLNGIVKPNLFPGRG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417344 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 PRO n 1 4 GLY n 1 5 LEU n 1 6 ASP n 1 7 ASP n 1 8 PRO n 1 9 LEU n 1 10 PRO n 1 11 THR n 1 12 GLU n 1 13 ARG n 1 14 LEU n 1 15 ALA n 1 16 SER n 1 17 GLU n 1 18 HIS n 1 19 LEU n 1 20 LYS n 1 21 PRO n 1 22 GLY n 1 23 CYS n 1 24 GLN n 1 25 GLY n 1 26 GLU n 1 27 GLN n 1 28 CYS n 1 29 PRO n 1 30 LEU n 1 31 VAL n 1 32 ASN n 1 33 ILE n 1 34 ASP n 1 35 THR n 1 36 LEU n 1 37 LYS n 1 38 PHE n 1 39 PRO n 1 40 ASP n 1 41 GLU n 1 42 PRO n 1 43 GLN n 1 44 LEU n 1 45 ASP n 1 46 PRO n 1 47 ILE n 1 48 VAL n 1 49 GLU n 1 50 ARG n 1 51 ALA n 1 52 LEU n 1 53 LEU n 1 54 GLU n 1 55 MSE n 1 56 THR n 1 57 ARG n 1 58 GLU n 1 59 ASN n 1 60 ASN n 1 61 GLU n 1 62 THR n 1 63 PRO n 1 64 LEU n 1 65 PRO n 1 66 ALA n 1 67 SER n 1 68 LEU n 1 69 ALA n 1 70 ALA n 1 71 TYR n 1 72 GLU n 1 73 ARG n 1 74 GLN n 1 75 PHE n 1 76 LEU n 1 77 ASP n 1 78 SER n 1 79 ALA n 1 80 GLU n 1 81 PRO n 1 82 GLY n 1 83 TRP n 1 84 SER n 1 85 SER n 1 86 TYR n 1 87 LEU n 1 88 GLN n 1 89 ALA n 1 90 LYS n 1 91 VAL n 1 92 ARG n 1 93 GLU n 1 94 GLN n 1 95 HIS n 1 96 ASP n 1 97 GLY n 1 98 LEU n 1 99 VAL n 1 100 ILE n 1 101 ILE n 1 102 GLU n 1 103 LEU n 1 104 SER n 1 105 SER n 1 106 TYR n 1 107 LEU n 1 108 PHE n 1 109 THR n 1 110 GLY n 1 111 GLY n 1 112 ALA n 1 113 HIS n 1 114 GLY n 1 115 MSE n 1 116 PRO n 1 117 GLY n 1 118 ARG n 1 119 GLY n 1 120 PHE n 1 121 ILE n 1 122 ASN n 1 123 TYR n 1 124 ASP n 1 125 ARG n 1 126 ARG n 1 127 GLN n 1 128 HIS n 1 129 LYS n 1 130 VAL n 1 131 LEU n 1 132 SER n 1 133 LEU n 1 134 GLN n 1 135 ASP n 1 136 MSE n 1 137 LEU n 1 138 VAL n 1 139 PRO n 1 140 GLY n 1 141 GLN n 1 142 GLU n 1 143 GLU n 1 144 ALA n 1 145 PHE n 1 146 TRP n 1 147 LYS n 1 148 GLN n 1 149 ALA n 1 150 GLU n 1 151 LEU n 1 152 ALA n 1 153 HIS n 1 154 LYS n 1 155 ALA n 1 156 TRP n 1 157 LEU n 1 158 LEU n 1 159 ALA n 1 160 ASN n 1 161 LYS n 1 162 LEU n 1 163 ASP n 1 164 GLN n 1 165 ASP n 1 166 ALA n 1 167 ASP n 1 168 PHE n 1 169 GLN n 1 170 LYS n 1 171 THR n 1 172 TRP n 1 173 PRO n 1 174 PHE n 1 175 GLN n 1 176 ARG n 1 177 THR n 1 178 PRO n 1 179 HIS n 1 180 VAL n 1 181 ALA n 1 182 LEU n 1 183 THR n 1 184 PHE n 1 185 GLY n 1 186 ALA n 1 187 VAL n 1 188 THR n 1 189 LEU n 1 190 LYS n 1 191 TYR n 1 192 ASP n 1 193 ALA n 1 194 TYR n 1 195 SER n 1 196 ILE n 1 197 ALA n 1 198 PRO n 1 199 TYR n 1 200 SER n 1 201 TYR n 1 202 ALA n 1 203 HIS n 1 204 PRO n 1 205 GLU n 1 206 LEU n 1 207 LYS n 1 208 ILE n 1 209 PRO n 1 210 TYR n 1 211 PRO n 1 212 ARG n 1 213 LEU n 1 214 ASN n 1 215 GLY n 1 216 ILE n 1 217 VAL n 1 218 LYS n 1 219 PRO n 1 220 ASN n 1 221 LEU n 1 222 PHE n 1 223 PRO n 1 224 GLY n 1 225 ARG n 1 226 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PA4972 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PAO1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208964 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HUJ3_PSEAE _struct_ref.pdbx_db_accession Q9HUJ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KPGLDDPLPTERLASEHLKPGCQGEQCPLVNIDTLKFPDEPQLDPIVERALLEMTRENNETPLPASLAAYERQFLDSAEP GWSSYLQAKVREQHDGLVIIELSSYLFTGGAHGMPGRGFINYDRRQHKVLSLQDMLVPGQEEAFWKQAELAHKAWLLANK LDQDADFQKTWPFQRTPHVALTFGAVTLKYDAYSIAPYSYAHPELKIPYPRLNGIVKPNLFPGRG ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E72 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 226 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HUJ3 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 248 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4E72 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9HUJ3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4E72 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '10.0% Glycerol, 1.26M tri-Sodium Citrate, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-02-29 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9796 1.0 2 0.9184 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength_list 0.9796,0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4E72 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 46.229 _reflns.number_obs 11243 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_netI_over_sigmaI 8.810 _reflns.percent_possible_obs 96.000 _reflns.B_iso_Wilson_estimate 36.721 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.47 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.15 2.23 3363 ? 1078 0.439 2.43 ? ? 3.12 ? ? 90.90 1 1 2.23 2.32 4018 ? 1120 0.363 3.4 ? ? ? ? ? 97.10 2 1 2.32 2.42 3852 ? 1086 0.292 4.0 ? ? ? ? ? 97.40 3 1 2.42 2.55 4120 ? 1165 0.226 4.7 ? ? ? ? ? 97.60 4 1 2.55 2.71 3869 ? 1112 0.171 6.0 ? ? ? ? ? 96.90 5 1 2.71 2.92 3789 ? 1119 0.124 7.5 ? ? ? ? ? 94.60 6 1 2.92 3.21 4123 ? 1139 0.088 10.8 ? ? ? ? ? 98.70 7 1 3.21 3.67 3989 ? 1136 0.073 14.1 ? ? ? ? ? 97.00 8 1 3.67 4.61 3743 ? 1105 0.062 16.5 ? ? ? ? ? 94.60 9 1 4.61 46.23 4094 ? 1183 0.059 17.9 ? ? ? ? ? 95.90 10 1 # _refine.entry_id 4E72 _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 46.229 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.0200 _refine.ls_number_reflns_obs 11219 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1732 _refine.ls_R_factor_R_work 0.1713 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2100 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7400 _refine.ls_number_reflns_R_free 532 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 43.9958 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5077 _refine.aniso_B[2][2] -10.3510 _refine.aniso_B[3][3] 9.8433 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 1.7381 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9449 _refine.correlation_coeff_Fo_to_Fc_free 0.9160 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 142.330 _refine.B_iso_min 20.750 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4E72 _refine_analyze.Luzzati_coordinate_error_obs 0.264 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1731 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 1781 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 46.229 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 813 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 44 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 262 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1799 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 223 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1936 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1799 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2454 1.020 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.470 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.890 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1500 _refine_ls_shell.d_res_low 2.3500 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 96.0200 _refine_ls_shell.number_reflns_R_work 2503 _refine_ls_shell.R_factor_all 0.1869 _refine_ls_shell.R_factor_R_work 0.1846 _refine_ls_shell.R_factor_R_free 0.2361 _refine_ls_shell.percent_reflns_R_free 4.3200 _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2616 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF3298 family protein (PA4972) from Pseudomonas aeruginosa PAO1 at 2.15 A resolution' _struct.entry_id 4E72 _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF11738 FAMILY, DUF3298, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4E72 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 43 ? MSE A 55 ? GLN A 65 MSE A 77 1 ? 13 HELX_P HELX_P2 2 SER A 67 ? ALA A 79 ? SER A 89 ALA A 101 1 ? 13 HELX_P HELX_P3 3 SER A 132 ? LEU A 137 ? SER A 154 LEU A 159 1 ? 6 HELX_P HELX_P4 4 GLN A 141 ? ASN A 160 ? GLN A 163 ASN A 182 1 ? 20 HELX_P HELX_P5 5 ASP A 165 ? TRP A 172 ? ASP A 187 TRP A 194 1 ? 8 HELX_P HELX_P6 6 PRO A 198 ? ALA A 202 ? PRO A 220 ALA A 224 5 ? 5 HELX_P HELX_P7 7 PRO A 209 ? ASN A 214 ? PRO A 231 ASN A 236 5 ? 6 HELX_P HELX_P8 8 LYS A 218 ? PHE A 222 ? LYS A 240 PHE A 244 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 54 C ? ? ? 1_555 A MSE 55 N ? ? A GLU 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 55 C ? ? ? 1_555 A THR 56 N ? ? A MSE 77 A THR 78 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A GLY 114 C ? ? ? 1_555 A MSE 115 N ? ? A GLY 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 115 C ? ? ? 1_555 A PRO 116 N ? ? A MSE 137 A PRO 138 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale5 covale both ? A ASP 135 C ? ? ? 1_555 A MSE 136 N ? ? A ASP 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A MSE 136 C ? ? ? 1_555 A LEU 137 N ? ? A MSE 158 A LEU 159 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 12 ? LEU A 19 ? GLU A 34 LEU A 41 A 2 LEU A 30 ? LYS A 37 ? LEU A 52 LYS A 59 A 3 SER A 84 ? HIS A 95 ? SER A 106 HIS A 117 A 4 LEU A 98 ? PHE A 108 ? LEU A 120 PHE A 130 A 5 MSE A 115 ? ASP A 124 ? MSE A 137 ASP A 146 A 6 LYS A 129 ? VAL A 130 ? LYS A 151 VAL A 152 B 1 HIS A 179 ? ALA A 181 ? HIS A 201 ALA A 203 B 2 VAL A 187 ? LYS A 190 ? VAL A 209 LYS A 212 B 3 GLU A 205 ? ILE A 208 ? GLU A 227 ILE A 230 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 36 O THR A 35 ? O THR A 57 A 2 3 N ASN A 32 ? N ASN A 54 O SER A 85 ? O SER A 107 A 3 4 N GLU A 93 ? N GLU A 115 O ILE A 100 ? O ILE A 122 A 4 5 N LEU A 107 ? N LEU A 129 O MSE A 115 ? O MSE A 137 A 5 6 N ASP A 124 ? N ASP A 146 O LYS A 129 ? O LYS A 151 B 1 2 N ALA A 181 ? N ALA A 203 O THR A 188 ? O THR A 210 B 2 3 N LEU A 189 ? N LEU A 211 O LEU A 206 ? O LEU A 228 # _atom_sites.entry_id 4E72 _atom_sites.fract_transf_matrix[1][1] 0.009724 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001410 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LYS 2 24 ? ? ? A . n A 1 3 PRO 3 25 ? ? ? A . n A 1 4 GLY 4 26 26 GLY GLY A . n A 1 5 LEU 5 27 27 LEU LEU A . n A 1 6 ASP 6 28 28 ASP ASP A . n A 1 7 ASP 7 29 29 ASP ASP A . n A 1 8 PRO 8 30 30 PRO PRO A . n A 1 9 LEU 9 31 31 LEU LEU A . n A 1 10 PRO 10 32 32 PRO PRO A . n A 1 11 THR 11 33 33 THR THR A . n A 1 12 GLU 12 34 34 GLU GLU A . n A 1 13 ARG 13 35 35 ARG ARG A . n A 1 14 LEU 14 36 36 LEU LEU A . n A 1 15 ALA 15 37 37 ALA ALA A . n A 1 16 SER 16 38 38 SER SER A . n A 1 17 GLU 17 39 39 GLU GLU A . n A 1 18 HIS 18 40 40 HIS HIS A . n A 1 19 LEU 19 41 41 LEU LEU A . n A 1 20 LYS 20 42 42 LYS LYS A . n A 1 21 PRO 21 43 43 PRO PRO A . n A 1 22 GLY 22 44 44 GLY GLY A . n A 1 23 CYS 23 45 45 CYS CYS A . n A 1 24 GLN 24 46 46 GLN GLN A . n A 1 25 GLY 25 47 47 GLY GLY A . n A 1 26 GLU 26 48 48 GLU GLU A . n A 1 27 GLN 27 49 49 GLN GLN A . n A 1 28 CYS 28 50 50 CYS CYS A . n A 1 29 PRO 29 51 51 PRO PRO A . n A 1 30 LEU 30 52 52 LEU LEU A . n A 1 31 VAL 31 53 53 VAL VAL A . n A 1 32 ASN 32 54 54 ASN ASN A . n A 1 33 ILE 33 55 55 ILE ILE A . n A 1 34 ASP 34 56 56 ASP ASP A . n A 1 35 THR 35 57 57 THR THR A . n A 1 36 LEU 36 58 58 LEU LEU A . n A 1 37 LYS 37 59 59 LYS LYS A . n A 1 38 PHE 38 60 60 PHE PHE A . n A 1 39 PRO 39 61 61 PRO PRO A . n A 1 40 ASP 40 62 62 ASP ASP A . n A 1 41 GLU 41 63 63 GLU GLU A . n A 1 42 PRO 42 64 64 PRO PRO A . n A 1 43 GLN 43 65 65 GLN GLN A . n A 1 44 LEU 44 66 66 LEU LEU A . n A 1 45 ASP 45 67 67 ASP ASP A . n A 1 46 PRO 46 68 68 PRO PRO A . n A 1 47 ILE 47 69 69 ILE ILE A . n A 1 48 VAL 48 70 70 VAL VAL A . n A 1 49 GLU 49 71 71 GLU GLU A . n A 1 50 ARG 50 72 72 ARG ARG A . n A 1 51 ALA 51 73 73 ALA ALA A . n A 1 52 LEU 52 74 74 LEU LEU A . n A 1 53 LEU 53 75 75 LEU LEU A . n A 1 54 GLU 54 76 76 GLU GLU A . n A 1 55 MSE 55 77 77 MSE MSE A . n A 1 56 THR 56 78 78 THR THR A . n A 1 57 ARG 57 79 79 ARG ARG A . n A 1 58 GLU 58 80 ? ? ? A . n A 1 59 ASN 59 81 ? ? ? A . n A 1 60 ASN 60 82 ? ? ? A . n A 1 61 GLU 61 83 ? ? ? A . n A 1 62 THR 62 84 84 THR THR A . n A 1 63 PRO 63 85 85 PRO PRO A . n A 1 64 LEU 64 86 86 LEU LEU A . n A 1 65 PRO 65 87 87 PRO PRO A . n A 1 66 ALA 66 88 88 ALA ALA A . n A 1 67 SER 67 89 89 SER SER A . n A 1 68 LEU 68 90 90 LEU LEU A . n A 1 69 ALA 69 91 91 ALA ALA A . n A 1 70 ALA 70 92 92 ALA ALA A . n A 1 71 TYR 71 93 93 TYR TYR A . n A 1 72 GLU 72 94 94 GLU GLU A . n A 1 73 ARG 73 95 95 ARG ARG A . n A 1 74 GLN 74 96 96 GLN GLN A . n A 1 75 PHE 75 97 97 PHE PHE A . n A 1 76 LEU 76 98 98 LEU LEU A . n A 1 77 ASP 77 99 99 ASP ASP A . n A 1 78 SER 78 100 100 SER SER A . n A 1 79 ALA 79 101 101 ALA ALA A . n A 1 80 GLU 80 102 102 GLU GLU A . n A 1 81 PRO 81 103 103 PRO PRO A . n A 1 82 GLY 82 104 104 GLY GLY A . n A 1 83 TRP 83 105 105 TRP TRP A . n A 1 84 SER 84 106 106 SER SER A . n A 1 85 SER 85 107 107 SER SER A . n A 1 86 TYR 86 108 108 TYR TYR A . n A 1 87 LEU 87 109 109 LEU LEU A . n A 1 88 GLN 88 110 110 GLN GLN A . n A 1 89 ALA 89 111 111 ALA ALA A . n A 1 90 LYS 90 112 112 LYS LYS A . n A 1 91 VAL 91 113 113 VAL VAL A . n A 1 92 ARG 92 114 114 ARG ARG A . n A 1 93 GLU 93 115 115 GLU GLU A . n A 1 94 GLN 94 116 116 GLN GLN A . n A 1 95 HIS 95 117 117 HIS HIS A . n A 1 96 ASP 96 118 118 ASP ASP A . n A 1 97 GLY 97 119 119 GLY GLY A . n A 1 98 LEU 98 120 120 LEU LEU A . n A 1 99 VAL 99 121 121 VAL VAL A . n A 1 100 ILE 100 122 122 ILE ILE A . n A 1 101 ILE 101 123 123 ILE ILE A . n A 1 102 GLU 102 124 124 GLU GLU A . n A 1 103 LEU 103 125 125 LEU LEU A . n A 1 104 SER 104 126 126 SER SER A . n A 1 105 SER 105 127 127 SER SER A . n A 1 106 TYR 106 128 128 TYR TYR A . n A 1 107 LEU 107 129 129 LEU LEU A . n A 1 108 PHE 108 130 130 PHE PHE A . n A 1 109 THR 109 131 131 THR THR A . n A 1 110 GLY 110 132 132 GLY GLY A . n A 1 111 GLY 111 133 133 GLY GLY A . n A 1 112 ALA 112 134 134 ALA ALA A . n A 1 113 HIS 113 135 135 HIS HIS A . n A 1 114 GLY 114 136 136 GLY GLY A . n A 1 115 MSE 115 137 137 MSE MSE A . n A 1 116 PRO 116 138 138 PRO PRO A . n A 1 117 GLY 117 139 139 GLY GLY A . n A 1 118 ARG 118 140 140 ARG ARG A . n A 1 119 GLY 119 141 141 GLY GLY A . n A 1 120 PHE 120 142 142 PHE PHE A . n A 1 121 ILE 121 143 143 ILE ILE A . n A 1 122 ASN 122 144 144 ASN ASN A . n A 1 123 TYR 123 145 145 TYR TYR A . n A 1 124 ASP 124 146 146 ASP ASP A . n A 1 125 ARG 125 147 147 ARG ARG A . n A 1 126 ARG 126 148 148 ARG ARG A . n A 1 127 GLN 127 149 149 GLN GLN A . n A 1 128 HIS 128 150 150 HIS HIS A . n A 1 129 LYS 129 151 151 LYS LYS A . n A 1 130 VAL 130 152 152 VAL VAL A . n A 1 131 LEU 131 153 153 LEU LEU A . n A 1 132 SER 132 154 154 SER SER A . n A 1 133 LEU 133 155 155 LEU LEU A . n A 1 134 GLN 134 156 156 GLN GLN A . n A 1 135 ASP 135 157 157 ASP ASP A . n A 1 136 MSE 136 158 158 MSE MSE A . n A 1 137 LEU 137 159 159 LEU LEU A . n A 1 138 VAL 138 160 160 VAL VAL A . n A 1 139 PRO 139 161 161 PRO PRO A . n A 1 140 GLY 140 162 162 GLY GLY A . n A 1 141 GLN 141 163 163 GLN GLN A . n A 1 142 GLU 142 164 164 GLU GLU A . n A 1 143 GLU 143 165 165 GLU GLU A . n A 1 144 ALA 144 166 166 ALA ALA A . n A 1 145 PHE 145 167 167 PHE PHE A . n A 1 146 TRP 146 168 168 TRP TRP A . n A 1 147 LYS 147 169 169 LYS LYS A . n A 1 148 GLN 148 170 170 GLN GLN A . n A 1 149 ALA 149 171 171 ALA ALA A . n A 1 150 GLU 150 172 172 GLU GLU A . n A 1 151 LEU 151 173 173 LEU LEU A . n A 1 152 ALA 152 174 174 ALA ALA A . n A 1 153 HIS 153 175 175 HIS HIS A . n A 1 154 LYS 154 176 176 LYS LYS A . n A 1 155 ALA 155 177 177 ALA ALA A . n A 1 156 TRP 156 178 178 TRP TRP A . n A 1 157 LEU 157 179 179 LEU LEU A . n A 1 158 LEU 158 180 180 LEU LEU A . n A 1 159 ALA 159 181 181 ALA ALA A . n A 1 160 ASN 160 182 182 ASN ASN A . n A 1 161 LYS 161 183 183 LYS LYS A . n A 1 162 LEU 162 184 184 LEU LEU A . n A 1 163 ASP 163 185 185 ASP ASP A . n A 1 164 GLN 164 186 186 GLN GLN A . n A 1 165 ASP 165 187 187 ASP ASP A . n A 1 166 ALA 166 188 188 ALA ALA A . n A 1 167 ASP 167 189 189 ASP ASP A . n A 1 168 PHE 168 190 190 PHE PHE A . n A 1 169 GLN 169 191 191 GLN GLN A . n A 1 170 LYS 170 192 192 LYS LYS A . n A 1 171 THR 171 193 193 THR THR A . n A 1 172 TRP 172 194 194 TRP TRP A . n A 1 173 PRO 173 195 195 PRO PRO A . n A 1 174 PHE 174 196 196 PHE PHE A . n A 1 175 GLN 175 197 197 GLN GLN A . n A 1 176 ARG 176 198 198 ARG ARG A . n A 1 177 THR 177 199 199 THR THR A . n A 1 178 PRO 178 200 200 PRO PRO A . n A 1 179 HIS 179 201 201 HIS HIS A . n A 1 180 VAL 180 202 202 VAL VAL A . n A 1 181 ALA 181 203 203 ALA ALA A . n A 1 182 LEU 182 204 204 LEU LEU A . n A 1 183 THR 183 205 205 THR THR A . n A 1 184 PHE 184 206 206 PHE PHE A . n A 1 185 GLY 185 207 207 GLY GLY A . n A 1 186 ALA 186 208 208 ALA ALA A . n A 1 187 VAL 187 209 209 VAL VAL A . n A 1 188 THR 188 210 210 THR THR A . n A 1 189 LEU 189 211 211 LEU LEU A . n A 1 190 LYS 190 212 212 LYS LYS A . n A 1 191 TYR 191 213 213 TYR TYR A . n A 1 192 ASP 192 214 214 ASP ASP A . n A 1 193 ALA 193 215 215 ALA ALA A . n A 1 194 TYR 194 216 216 TYR TYR A . n A 1 195 SER 195 217 217 SER SER A . n A 1 196 ILE 196 218 218 ILE ILE A . n A 1 197 ALA 197 219 219 ALA ALA A . n A 1 198 PRO 198 220 220 PRO PRO A . n A 1 199 TYR 199 221 221 TYR TYR A . n A 1 200 SER 200 222 222 SER SER A . n A 1 201 TYR 201 223 223 TYR TYR A . n A 1 202 ALA 202 224 224 ALA ALA A . n A 1 203 HIS 203 225 225 HIS HIS A . n A 1 204 PRO 204 226 226 PRO PRO A . n A 1 205 GLU 205 227 227 GLU GLU A . n A 1 206 LEU 206 228 228 LEU LEU A . n A 1 207 LYS 207 229 229 LYS LYS A . n A 1 208 ILE 208 230 230 ILE ILE A . n A 1 209 PRO 209 231 231 PRO PRO A . n A 1 210 TYR 210 232 232 TYR TYR A . n A 1 211 PRO 211 233 233 PRO PRO A . n A 1 212 ARG 212 234 234 ARG ARG A . n A 1 213 LEU 213 235 235 LEU LEU A . n A 1 214 ASN 214 236 236 ASN ASN A . n A 1 215 GLY 215 237 237 GLY GLY A . n A 1 216 ILE 216 238 238 ILE ILE A . n A 1 217 VAL 217 239 239 VAL VAL A . n A 1 218 LYS 218 240 240 LYS LYS A . n A 1 219 PRO 219 241 241 PRO PRO A . n A 1 220 ASN 220 242 242 ASN ASN A . n A 1 221 LEU 221 243 243 LEU LEU A . n A 1 222 PHE 222 244 244 PHE PHE A . n A 1 223 PRO 223 245 245 PRO PRO A . n A 1 224 GLY 224 246 246 GLY GLY A . n A 1 225 ARG 225 247 247 ARG ARG A . n A 1 226 GLY 226 248 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 251 HOH HOH A . B 2 HOH 2 302 252 HOH HOH A . B 2 HOH 3 303 253 HOH HOH A . B 2 HOH 4 304 254 HOH HOH A . B 2 HOH 5 305 255 HOH HOH A . B 2 HOH 6 306 256 HOH HOH A . B 2 HOH 7 307 257 HOH HOH A . B 2 HOH 8 308 258 HOH HOH A . B 2 HOH 9 309 259 HOH HOH A . B 2 HOH 10 310 260 HOH HOH A . B 2 HOH 11 311 261 HOH HOH A . B 2 HOH 12 312 262 HOH HOH A . B 2 HOH 13 313 263 HOH HOH A . B 2 HOH 14 314 264 HOH HOH A . B 2 HOH 15 315 265 HOH HOH A . B 2 HOH 16 316 266 HOH HOH A . B 2 HOH 17 317 267 HOH HOH A . B 2 HOH 18 318 268 HOH HOH A . B 2 HOH 19 319 269 HOH HOH A . B 2 HOH 20 320 270 HOH HOH A . B 2 HOH 21 321 271 HOH HOH A . B 2 HOH 22 322 272 HOH HOH A . B 2 HOH 23 323 273 HOH HOH A . B 2 HOH 24 324 274 HOH HOH A . B 2 HOH 25 325 275 HOH HOH A . B 2 HOH 26 326 276 HOH HOH A . B 2 HOH 27 327 277 HOH HOH A . B 2 HOH 28 328 278 HOH HOH A . B 2 HOH 29 329 279 HOH HOH A . B 2 HOH 30 330 280 HOH HOH A . B 2 HOH 31 331 281 HOH HOH A . B 2 HOH 32 332 282 HOH HOH A . B 2 HOH 33 333 283 HOH HOH A . B 2 HOH 34 334 284 HOH HOH A . B 2 HOH 35 335 285 HOH HOH A . B 2 HOH 36 336 286 HOH HOH A . B 2 HOH 37 337 287 HOH HOH A . B 2 HOH 38 338 288 HOH HOH A . B 2 HOH 39 339 289 HOH HOH A . B 2 HOH 40 340 290 HOH HOH A . B 2 HOH 41 341 291 HOH HOH A . B 2 HOH 42 342 292 HOH HOH A . B 2 HOH 43 343 293 HOH HOH A . B 2 HOH 44 344 294 HOH HOH A . B 2 HOH 45 345 295 HOH HOH A . B 2 HOH 46 346 296 HOH HOH A . B 2 HOH 47 347 297 HOH HOH A . B 2 HOH 48 348 298 HOH HOH A . B 2 HOH 49 349 299 HOH HOH A . B 2 HOH 50 350 300 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 55 A MSE 77 ? MET SELENOMETHIONINE 2 A MSE 115 A MSE 137 ? MET SELENOMETHIONINE 3 A MSE 136 A MSE 158 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2012-05-23 3 'Structure model' 1 2 2014-12-24 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Database references' 6 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation_author 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_citation_author.name' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 35.8035 _pdbx_refine_tls.origin_y 17.9340 _pdbx_refine_tls.origin_z 18.4987 _pdbx_refine_tls.T[1][1] -0.1395 _pdbx_refine_tls.T[2][2] 0.0231 _pdbx_refine_tls.T[3][3] -0.1317 _pdbx_refine_tls.T[1][2] 0.0041 _pdbx_refine_tls.T[1][3] -0.0137 _pdbx_refine_tls.T[2][3] 0.0197 _pdbx_refine_tls.L[1][1] 1.0421 _pdbx_refine_tls.L[2][2] 1.3059 _pdbx_refine_tls.L[3][3] 2.0653 _pdbx_refine_tls.L[1][2] 0.1792 _pdbx_refine_tls.L[1][3] 0.1769 _pdbx_refine_tls.L[2][3] 0.4648 _pdbx_refine_tls.S[1][1] -0.0736 _pdbx_refine_tls.S[2][2] 0.0571 _pdbx_refine_tls.S[3][3] 0.0165 _pdbx_refine_tls.S[1][2] -0.1913 _pdbx_refine_tls.S[1][3] -0.0596 _pdbx_refine_tls.S[2][3] -0.0681 _pdbx_refine_tls.S[2][1] -0.0369 _pdbx_refine_tls.S[3][1] 0.0407 _pdbx_refine_tls.S[3][2] 0.0489 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 26 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 247 _pdbx_refine_tls_group.selection_details '{ A|26 - 247 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 29, 2011' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4E72 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 24-248) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 224 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 55.29 _pdbx_validate_torsion.psi -119.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 46 ? CG ? A GLN 24 CG 2 1 Y 1 A GLN 46 ? CD ? A GLN 24 CD 3 1 Y 1 A GLN 46 ? OE1 ? A GLN 24 OE1 4 1 Y 1 A GLN 46 ? NE2 ? A GLN 24 NE2 5 1 Y 1 A THR 84 ? OG1 ? A THR 62 OG1 6 1 Y 1 A THR 84 ? CG2 ? A THR 62 CG2 7 1 Y 1 A GLU 165 ? CG ? A GLU 143 CG 8 1 Y 1 A GLU 165 ? CD ? A GLU 143 CD 9 1 Y 1 A GLU 165 ? OE1 ? A GLU 143 OE1 10 1 Y 1 A GLU 165 ? OE2 ? A GLU 143 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A LYS 24 ? A LYS 2 3 1 Y 1 A PRO 25 ? A PRO 3 4 1 Y 1 A GLU 80 ? A GLU 58 5 1 Y 1 A ASN 81 ? A ASN 59 6 1 Y 1 A ASN 82 ? A ASN 60 7 1 Y 1 A GLU 83 ? A GLU 61 8 1 Y 1 A GLY 248 ? A GLY 226 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #