data_4E95
# 
_entry.id   4E95 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4E95         pdb_00004e95 10.2210/pdb4e95/pdb 
NDB   NA1696       ?            ?                   
RCSB  RCSB071325   ?            ?                   
WWPDB D_1000071325 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2013-03-20 
2 'Structure model' 1 1 2017-03-08 
3 'Structure model' 1 2 2017-11-15 
4 'Structure model' 1 3 2024-02-28 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Refinement description' 
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 4 'Structure model' 'Derived calculations'   
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' software               
2 4 'Structure model' chem_comp_atom         
3 4 'Structure model' chem_comp_bond         
4 4 'Structure model' database_2             
5 4 'Structure model' pdbx_struct_conn_angle 
6 4 'Structure model' struct_conn            
7 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_software.classification'                    
2  3 'Structure model' '_software.name'                              
3  3 'Structure model' '_software.version'                           
4  4 'Structure model' '_database_2.pdbx_DOI'                        
5  4 'Structure model' '_database_2.pdbx_database_accession'         
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
18 4 'Structure model' '_pdbx_struct_conn_angle.value'               
19 4 'Structure model' '_struct_conn.pdbx_dist_value'                
20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
31 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
32 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
33 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
34 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4E95 
_pdbx_database_status.recvd_initial_deposition_date   2012-03-20 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 4DX4 . unspecified 
PDB 4E7Y . unspecified 
PDB 4E87 . unspecified 
PDB 4E8S . unspecified 
PDB 4E8X . unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Hall, J.P.'   1 
'Cardin, C.J.' 2 
# 
_citation.id                        primary 
_citation.title                     'The effects of disubstitution on the binding of ruthenium complexes to DNA' 
_citation.journal_abbrev            'Thesis, University of Reading' 
_citation.journal_volume            ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.year                      2014 
_citation.journal_id_ASTM           ? 
_citation.country                   ? 
_citation.journal_id_ISSN           ? 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      ? 
# 
_citation_author.citation_id        primary 
_citation_author.name               'Hall, J.P.' 
_citation_author.ordinal            1 
_citation_author.identifier_ORCID   ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3'" 3045.992 1  ? ? ? ? 
2 non-polymer syn 'BARIUM ION' 137.327  1  ? ? ? ? 
3 non-polymer syn 
"(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
775.785  1  ? ? ? ? 
4 water       nat water 18.015   38 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCGGATCCGG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'BARIUM ION' BA  
3 
"(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
RML 
4 water HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DG n 
1 4  DG n 
1 5  DA n 
1 6  DT n 
1 7  DC n 
1 8  DC n 
1 9  DG n 
1 10 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                'DNA Purchased from ATDBio' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BA  non-polymer   . 'BARIUM ION' ?                                                                                'Ba 2' 137.327 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'  331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'   307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'  347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?                                                                                
'C10 H15 N2 O8 P'  322.208 
HOH non-polymer   . WATER ?                                                                                'H2 O'             
18.015  
RML non-polymer   . 
"(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 
'Lambda-[Ru(1,4,5,8-tetraazaphenanthrene)2(11,12-dimethyl-dipyridophenazine)]2+' 'C40 H26 N12 Ru 2' 775.785 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DC 2  2  2  DC DC A . n 
A 1 3  DG 3  3  3  DG DG A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DA 5  5  5  DA DA A . n 
A 1 6  DT 6  6  6  DT DT A . n 
A 1 7  DC 7  7  7  DC DC A . n 
A 1 8  DC 8  8  8  DC DC A . n 
A 1 9  DG 9  9  9  DG DG A . n 
A 1 10 DG 10 10 10 DG DG A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 BA  1  101 1  BA  BA  A . 
C 3 RML 1  102 1  RML RML A . 
D 4 HOH 1  201 1  HOH HOH A . 
D 4 HOH 2  202 2  HOH HOH A . 
D 4 HOH 3  203 3  HOH HOH A . 
D 4 HOH 4  204 4  HOH HOH A . 
D 4 HOH 5  205 5  HOH HOH A . 
D 4 HOH 6  206 6  HOH HOH A . 
D 4 HOH 7  207 7  HOH HOH A . 
D 4 HOH 8  208 8  HOH HOH A . 
D 4 HOH 9  209 9  HOH HOH A . 
D 4 HOH 10 210 10 HOH HOH A . 
D 4 HOH 11 211 11 HOH HOH A . 
D 4 HOH 12 212 12 HOH HOH A . 
D 4 HOH 13 213 13 HOH HOH A . 
D 4 HOH 14 214 14 HOH HOH A . 
D 4 HOH 15 215 15 HOH HOH A . 
D 4 HOH 16 216 16 HOH HOH A . 
D 4 HOH 17 217 17 HOH HOH A . 
D 4 HOH 18 218 18 HOH HOH A . 
D 4 HOH 19 219 19 HOH HOH A . 
D 4 HOH 20 220 20 HOH HOH A . 
D 4 HOH 21 221 21 HOH HOH A . 
D 4 HOH 22 222 22 HOH HOH A . 
D 4 HOH 23 223 23 HOH HOH A . 
D 4 HOH 24 224 24 HOH HOH A . 
D 4 HOH 25 225 25 HOH HOH A . 
D 4 HOH 26 226 26 HOH HOH A . 
D 4 HOH 27 227 27 HOH HOH A . 
D 4 HOH 28 228 28 HOH HOH A . 
D 4 HOH 29 229 29 HOH HOH A . 
D 4 HOH 30 230 30 HOH HOH A . 
D 4 HOH 31 231 31 HOH HOH A . 
D 4 HOH 32 232 32 HOH HOH A . 
D 4 HOH 33 233 33 HOH HOH A . 
D 4 HOH 34 234 34 HOH HOH A . 
D 4 HOH 35 235 35 HOH HOH A . 
D 4 HOH 36 236 36 HOH HOH A . 
D 4 HOH 37 237 37 HOH HOH A . 
D 4 HOH 38 238 38 HOH HOH A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
GDA     'data collection' .        ? 1 
SHELXCD phasing           .        ? 2 
SHELXE  'model building'  .        ? 3 
REFMAC  refinement        5.6.0117 ? 4 
XDS     'data reduction'  .        ? 5 
SCALA   'data scaling'    .        ? 6 
# 
_cell.entry_id           4E95 
_cell.length_a           47.440 
_cell.length_b           47.440 
_cell.length_c           34.530 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4E95 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          4E95 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.19 
_exptl_crystal.density_percent_sol   61.43 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            298 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6 
_exptl_crystal_grow.pdbx_details    
;1ul 2mM DNA, 1ul 4mM lambda-[Ru(TAP)2(dppz-(Me)2]Cl2, 6ul 10% 2-methyl-2,4-pentanediol, 40mM sodium cacodylate, 12mM spermine tetra-HCl, 80mM potassium chloride, 20mM barium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 315r' 
_diffrn_detector.pdbx_collection_date   2012-03-12 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'Dual crystal Si(111)' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.9795 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I02' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I02 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.9795 
# 
_reflns.entry_id                     4E95 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             34.53 
_reflns.d_resolution_high            1.94 
_reflns.number_obs                   3216 
_reflns.number_all                   3219 
_reflns.percent_possible_obs         99.9 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             1.94 
_reflns_shell.d_res_low              1.99 
_reflns_shell.percent_possible_all   100 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 4E95 
_refine.ls_number_reflns_obs                     3055 
_refine.ls_number_reflns_all                     3055 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          . 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             33.55 
_refine.ls_d_res_high                            1.94 
_refine.ls_percent_reflns_obs                    100.00 
_refine.ls_R_factor_obs                          0.18603 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.18331 
_refine.ls_R_factor_R_free                       0.24635 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 4.4 
_refine.ls_number_reflns_R_free                  139 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.959 
_refine.correlation_coeff_Fo_to_Fc_free          0.908 
_refine.B_iso_mean                               33.236 
_refine.aniso_B[1][1]                            0.33 
_refine.aniso_B[2][2]                            0.33 
_refine.aniso_B[3][3]                            -0.66 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          SAD 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD WITH PHASES' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.143 
_refine.pdbx_overall_ESU_R_Free                  0.150 
_refine.overall_SU_ML                            0.083 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             2.865 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   202 
_refine_hist.pdbx_number_atoms_ligand         54 
_refine_hist.number_atoms_solvent             38 
_refine_hist.number_atoms_total               294 
_refine_hist.d_res_high                       1.94 
_refine_hist.d_res_low                        33.55 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
r_bond_refined_d             0.022 0.013 ? 292 ? 'X-RAY DIFFRACTION' 
r_bond_other_d               0.002 0.020 ? 129 ? 'X-RAY DIFFRACTION' 
r_angle_refined_deg          3.707 1.751 ? 460 ? 'X-RAY DIFFRACTION' 
r_angle_other_deg            1.712 3.000 ? 298 ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_1_deg       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_2_deg       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_3_deg       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_4_deg       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_chiral_restr               0.088 0.200 ? 30  ? 'X-RAY DIFFRACTION' 
r_gen_planes_refined         0.029 0.020 ? 176 ? 'X-RAY DIFFRACTION' 
r_gen_planes_other           0.003 0.020 ? 74  ? 'X-RAY DIFFRACTION' 
r_nbd_refined                ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_nbd_other                  ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_refined              ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_other                ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_refined        ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_other          ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_refined          ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_other            ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_refined       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_other         ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_refined     ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_other       ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_refined ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_other   ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_it                  ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_other               ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_mcangle_it                 ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_scbond_it                  ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_scangle_it                 ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_rigid_bond_restr           ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_sphericity_free            ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
r_sphericity_bonded          ?     ?     ? ?   ? 'X-RAY DIFFRACTION' 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.940 
_refine_ls_shell.d_res_low                        1.990 
_refine_ls_shell.number_reflns_R_work             190 
_refine_ls_shell.R_factor_R_work                  0.281 
_refine_ls_shell.percent_reflns_obs               100.00 
_refine_ls_shell.R_factor_R_free                  0.271 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             4 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_database_PDB_matrix.entry_id          4E95 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  4E95 
_struct.title                     'Lambda-[Ru(TAP)2(dppz-(Me)2)]2+ bound to CCGGATCCGG' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4E95 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Intercalation, Photoreactive, Lambda-[Ru(TAP)2(dppz-(Me)2]2+, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4E95 
_struct_ref.pdbx_db_accession          4E95 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CCGGATCCGG 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              4E95 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             4E95 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2120 ? 
1 MORE         -24  ? 
1 'SSA (A^2)'  4410 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z    1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000   
2 'crystal symmetry operation' 7_553 y,x,-z-2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -69.0600000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 3 N7 ? ? ? 1_555 B BA  . BA ? ? A DG 3   A BA  101 1_555 ? ? ? ? ? ? ?            3.091 ? ? 
metalc2  metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA  . BA ? ? A DG 4   A BA  101 1_555 ? ? ? ? ? ? ?            2.881 ? ? 
metalc3  metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 101 A HOH 201 1_555 ? ? ? ? ? ? ?            2.962 ? ? 
metalc4  metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 101 A HOH 202 1_555 ? ? ? ? ? ? ?            3.004 ? ? 
metalc5  metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 101 A HOH 204 1_555 ? ? ? ? ? ? ?            2.898 ? ? 
metalc6  metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 101 A HOH 208 1_555 ? ? ? ? ? ? ?            3.069 ? ? 
metalc7  metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O  ? ? A BA 101 A HOH 215 1_555 ? ? ? ? ? ? ?            3.137 ? ? 
hydrog1  hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG  9 N1 ? ? A DC 2   A DG  9   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG  9 O6 ? ? A DC 2   A DG  9   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG  9 N2 ? ? A DC 2   A DG  9   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC  8 N3 ? ? A DG 3   A DC  8   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC  8 O2 ? ? A DG 3   A DC  8   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC  8 N4 ? ? A DG 3   A DC  8   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC  7 N3 ? ? A DG 4   A DC  7   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC  7 O2 ? ? A DG 4   A DC  7   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC  7 N4 ? ? A DG 4   A DC  7   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT  6 N3 ? ? A DA 5   A DT  6   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT  6 O4 ? ? A DA 5   A DT  6   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA  5 N1 ? ? A DT 6   A DA  5   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA  5 N6 ? ? A DT 6   A DA  5   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG  4 N1 ? ? A DC 7   A DG  4   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG  4 O6 ? ? A DC 7   A DG  4   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG  4 N2 ? ? A DC 7   A DG  4   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG  3 N1 ? ? A DC 8   A DG  3   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG  3 O6 ? ? A DC 8   A DG  3   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG  3 N2 ? ? A DC 8   A DG  3   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC  2 N3 ? ? A DG 9   A DC  2   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC  2 O2 ? ? A DG 9   A DC  2   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC  2 N4 ? ? A DG 9   A DC  2   7_553 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O6 ? A DG  4 ? A DG  4   ? 1_555 74.7  ? 
2  N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 201 ? 1_555 74.0  ? 
3  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 201 ? 1_555 69.7  ? 
4  N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 202 ? 1_555 73.4  ? 
5  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 202 ? 1_555 139.0 ? 
6  O  ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 202 ? 1_555 77.2  ? 
7  N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 204 ? 1_555 141.8 ? 
8  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 204 ? 1_555 141.2 ? 
9  O  ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 204 ? 1_555 103.0 ? 
10 O  ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 204 ? 1_555 68.9  ? 
11 N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 208 ? 1_555 78.6  ? 
12 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 208 ? 1_555 130.3 ? 
13 O  ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 208 ? 1_555 139.3 ? 
14 O  ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 208 ? 1_555 66.5  ? 
15 O  ? D HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 208 ? 1_555 80.8  ? 
16 N7 ? A DG  3 ? A DG  3   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 139.8 ? 
17 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 73.3  ? 
18 O  ? D HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 72.6  ? 
19 O  ? D HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 119.1 ? 
20 O  ? D HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 68.3  ? 
21 O  ? D HOH . ? A HOH 208 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O  ? D HOH . ? A HOH 215 ? 1_555 141.4 ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A BA  101 ? 7  'BINDING SITE FOR RESIDUE BA A 101'  
AC2 Software A RML 102 ? 10 'BINDING SITE FOR RESIDUE RML A 102' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 7  DG  A 3  ? DG  A 3   . ? 1_555 ? 
2  AC1 7  DG  A 4  ? DG  A 4   . ? 1_555 ? 
3  AC1 7  HOH D .  ? HOH A 201 . ? 1_555 ? 
4  AC1 7  HOH D .  ? HOH A 202 . ? 1_555 ? 
5  AC1 7  HOH D .  ? HOH A 204 . ? 1_555 ? 
6  AC1 7  HOH D .  ? HOH A 208 . ? 1_555 ? 
7  AC1 7  HOH D .  ? HOH A 217 . ? 7_553 ? 
8  AC2 10 DC  A 1  ? DC  A 1   . ? 1_555 ? 
9  AC2 10 DC  A 2  ? DC  A 2   . ? 1_555 ? 
10 AC2 10 DG  A 3  ? DG  A 3   . ? 1_555 ? 
11 AC2 10 DG  A 3  ? DG  A 3   . ? 4_545 ? 
12 AC2 10 DG  A 4  ? DG  A 4   . ? 4_545 ? 
13 AC2 10 DC  A 7  ? DC  A 7   . ? 6_543 ? 
14 AC2 10 DC  A 8  ? DC  A 8   . ? 6_543 ? 
15 AC2 10 DG  A 9  ? DG  A 9   . ? 7_553 ? 
16 AC2 10 DG  A 10 ? DG  A 10  . ? 7_553 ? 
17 AC2 10 HOH D .  ? HOH A 238 . ? 1_555 ? 
# 
loop_
_pdbx_validate_symm_contact.id 
_pdbx_validate_symm_contact.PDB_model_num 
_pdbx_validate_symm_contact.auth_atom_id_1 
_pdbx_validate_symm_contact.auth_asym_id_1 
_pdbx_validate_symm_contact.auth_comp_id_1 
_pdbx_validate_symm_contact.auth_seq_id_1 
_pdbx_validate_symm_contact.PDB_ins_code_1 
_pdbx_validate_symm_contact.label_alt_id_1 
_pdbx_validate_symm_contact.site_symmetry_1 
_pdbx_validate_symm_contact.auth_atom_id_2 
_pdbx_validate_symm_contact.auth_asym_id_2 
_pdbx_validate_symm_contact.auth_comp_id_2 
_pdbx_validate_symm_contact.auth_seq_id_2 
_pdbx_validate_symm_contact.PDB_ins_code_2 
_pdbx_validate_symm_contact.label_alt_id_2 
_pdbx_validate_symm_contact.site_symmetry_2 
_pdbx_validate_symm_contact.dist 
1 1 N3 A DC 1 ? ? 1_555 O6 A DG 10 ? ? 7_553 1.98 
2 1 N4 A DC 1 ? ? 1_555 O6 A DG 10 ? ? 7_553 2.15 
# 
_pdbx_validate_rmsd_bond.id                        1 
_pdbx_validate_rmsd_bond.PDB_model_num             1 
_pdbx_validate_rmsd_bond.auth_atom_id_1            "O3'" 
_pdbx_validate_rmsd_bond.auth_asym_id_1            A 
_pdbx_validate_rmsd_bond.auth_comp_id_1            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_1             1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1            ? 
_pdbx_validate_rmsd_bond.label_alt_id_1            ? 
_pdbx_validate_rmsd_bond.auth_atom_id_2            P 
_pdbx_validate_rmsd_bond.auth_asym_id_2            A 
_pdbx_validate_rmsd_bond.auth_comp_id_2            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_2             2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2            ? 
_pdbx_validate_rmsd_bond.label_alt_id_2            ? 
_pdbx_validate_rmsd_bond.bond_value                1.532 
_pdbx_validate_rmsd_bond.bond_target_value         1.607 
_pdbx_validate_rmsd_bond.bond_deviation            -0.075 
_pdbx_validate_rmsd_bond.bond_standard_deviation   0.012 
_pdbx_validate_rmsd_bond.linker_flag               Y 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O3'" A DC 1 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 118.71 110.50 8.21  1.10 Y 
2 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 120.87 110.70 10.17 1.20 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BA  BA     BA N N 1   
DA  OP3    O  N N 2   
DA  P      P  N N 3   
DA  OP1    O  N N 4   
DA  OP2    O  N N 5   
DA  "O5'"  O  N N 6   
DA  "C5'"  C  N N 7   
DA  "C4'"  C  N R 8   
DA  "O4'"  O  N N 9   
DA  "C3'"  C  N S 10  
DA  "O3'"  O  N N 11  
DA  "C2'"  C  N N 12  
DA  "C1'"  C  N R 13  
DA  N9     N  Y N 14  
DA  C8     C  Y N 15  
DA  N7     N  Y N 16  
DA  C5     C  Y N 17  
DA  C6     C  Y N 18  
DA  N6     N  N N 19  
DA  N1     N  Y N 20  
DA  C2     C  Y N 21  
DA  N3     N  Y N 22  
DA  C4     C  Y N 23  
DA  HOP3   H  N N 24  
DA  HOP2   H  N N 25  
DA  "H5'"  H  N N 26  
DA  "H5''" H  N N 27  
DA  "H4'"  H  N N 28  
DA  "H3'"  H  N N 29  
DA  "HO3'" H  N N 30  
DA  "H2'"  H  N N 31  
DA  "H2''" H  N N 32  
DA  "H1'"  H  N N 33  
DA  H8     H  N N 34  
DA  H61    H  N N 35  
DA  H62    H  N N 36  
DA  H2     H  N N 37  
DC  OP3    O  N N 38  
DC  P      P  N N 39  
DC  OP1    O  N N 40  
DC  OP2    O  N N 41  
DC  "O5'"  O  N N 42  
DC  "C5'"  C  N N 43  
DC  "C4'"  C  N R 44  
DC  "O4'"  O  N N 45  
DC  "C3'"  C  N S 46  
DC  "O3'"  O  N N 47  
DC  "C2'"  C  N N 48  
DC  "C1'"  C  N R 49  
DC  N1     N  N N 50  
DC  C2     C  N N 51  
DC  O2     O  N N 52  
DC  N3     N  N N 53  
DC  C4     C  N N 54  
DC  N4     N  N N 55  
DC  C5     C  N N 56  
DC  C6     C  N N 57  
DC  HOP3   H  N N 58  
DC  HOP2   H  N N 59  
DC  "H5'"  H  N N 60  
DC  "H5''" H  N N 61  
DC  "H4'"  H  N N 62  
DC  "H3'"  H  N N 63  
DC  "HO3'" H  N N 64  
DC  "H2'"  H  N N 65  
DC  "H2''" H  N N 66  
DC  "H1'"  H  N N 67  
DC  H41    H  N N 68  
DC  H42    H  N N 69  
DC  H5     H  N N 70  
DC  H6     H  N N 71  
DG  OP3    O  N N 72  
DG  P      P  N N 73  
DG  OP1    O  N N 74  
DG  OP2    O  N N 75  
DG  "O5'"  O  N N 76  
DG  "C5'"  C  N N 77  
DG  "C4'"  C  N R 78  
DG  "O4'"  O  N N 79  
DG  "C3'"  C  N S 80  
DG  "O3'"  O  N N 81  
DG  "C2'"  C  N N 82  
DG  "C1'"  C  N R 83  
DG  N9     N  Y N 84  
DG  C8     C  Y N 85  
DG  N7     N  Y N 86  
DG  C5     C  Y N 87  
DG  C6     C  N N 88  
DG  O6     O  N N 89  
DG  N1     N  N N 90  
DG  C2     C  N N 91  
DG  N2     N  N N 92  
DG  N3     N  N N 93  
DG  C4     C  Y N 94  
DG  HOP3   H  N N 95  
DG  HOP2   H  N N 96  
DG  "H5'"  H  N N 97  
DG  "H5''" H  N N 98  
DG  "H4'"  H  N N 99  
DG  "H3'"  H  N N 100 
DG  "HO3'" H  N N 101 
DG  "H2'"  H  N N 102 
DG  "H2''" H  N N 103 
DG  "H1'"  H  N N 104 
DG  H8     H  N N 105 
DG  H1     H  N N 106 
DG  H21    H  N N 107 
DG  H22    H  N N 108 
DT  OP3    O  N N 109 
DT  P      P  N N 110 
DT  OP1    O  N N 111 
DT  OP2    O  N N 112 
DT  "O5'"  O  N N 113 
DT  "C5'"  C  N N 114 
DT  "C4'"  C  N R 115 
DT  "O4'"  O  N N 116 
DT  "C3'"  C  N S 117 
DT  "O3'"  O  N N 118 
DT  "C2'"  C  N N 119 
DT  "C1'"  C  N R 120 
DT  N1     N  N N 121 
DT  C2     C  N N 122 
DT  O2     O  N N 123 
DT  N3     N  N N 124 
DT  C4     C  N N 125 
DT  O4     O  N N 126 
DT  C5     C  N N 127 
DT  C7     C  N N 128 
DT  C6     C  N N 129 
DT  HOP3   H  N N 130 
DT  HOP2   H  N N 131 
DT  "H5'"  H  N N 132 
DT  "H5''" H  N N 133 
DT  "H4'"  H  N N 134 
DT  "H3'"  H  N N 135 
DT  "HO3'" H  N N 136 
DT  "H2'"  H  N N 137 
DT  "H2''" H  N N 138 
DT  "H1'"  H  N N 139 
DT  H3     H  N N 140 
DT  H71    H  N N 141 
DT  H72    H  N N 142 
DT  H73    H  N N 143 
DT  H6     H  N N 144 
HOH O      O  N N 145 
HOH H1     H  N N 146 
HOH H2     H  N N 147 
RML C53    C  N N 148 
RML C17    C  Y N 149 
RML C18    C  Y N 150 
RML C52    C  N N 151 
RML C14    C  Y N 152 
RML C16    C  Y N 153 
RML C15    C  Y N 154 
RML N3     N  Y N 155 
RML C13    C  Y N 156 
RML N4     N  Y N 157 
RML C7     C  Y N 158 
RML C6     C  Y N 159 
RML C5     C  Y N 160 
RML C4     C  Y N 161 
RML C3     C  Y N 162 
RML C2     C  Y N 163 
RML C8     C  Y N 164 
RML C10    C  Y N 165 
RML C1     C  Y N 166 
RML N2     N  Y N 167 
RML N1     N  Y N 168 
RML C12    C  Y N 169 
RML C11    C  Y N 170 
RML C9     C  Y N 171 
RML RU     RU N N 172 
RML N8     N  Y N 173 
RML C28    C  Y N 174 
RML C27    C  Y N 175 
RML N7     N  Y N 176 
RML C26    C  Y N 177 
RML C25    C  Y N 178 
RML C24    C  Y N 179 
RML C23    C  Y N 180 
RML C22    C  Y N 181 
RML N6     N  Y N 182 
RML C19    C  Y N 183 
RML N5     N  Y N 184 
RML C20    C  Y N 185 
RML C21    C  Y N 186 
RML N12    N  Y N 187 
RML C38    C  Y N 188 
RML C37    C  Y N 189 
RML N11    N  Y N 190 
RML C36    C  Y N 191 
RML C29    C  Y N 192 
RML N9     N  Y N 193 
RML C30    C  Y N 194 
RML C31    C  Y N 195 
RML C35    C  Y N 196 
RML C34    C  Y N 197 
RML C33    C  Y N 198 
RML C32    C  Y N 199 
RML N10    N  Y N 200 
RML H1     H  N N 201 
RML H2     H  N N 202 
RML H3     H  N N 203 
RML H4     H  N N 204 
RML H5     H  N N 205 
RML H6     H  N N 206 
RML H7     H  N N 207 
RML H8     H  N N 208 
RML H9     H  N N 209 
RML H10    H  N N 210 
RML H11    H  N N 211 
RML H12    H  N N 212 
RML H13    H  N N 213 
RML H14    H  N N 214 
RML H15    H  N N 215 
RML H16    H  N N 216 
RML H17    H  N N 217 
RML H18    H  N N 218 
RML H19    H  N N 219 
RML H20    H  N N 220 
RML H21    H  N N 221 
RML H22    H  N N 222 
RML H23    H  N N 223 
RML H24    H  N N 224 
RML H25    H  N N 225 
RML H26    H  N N 226 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
RML C23   C24    doub Y N 152 
RML C23   C22    sing Y N 153 
RML C24   C25    sing Y N 154 
RML N6    C22    doub Y N 155 
RML N6    C21    sing Y N 156 
RML C22   C19    sing Y N 157 
RML C25   N7     doub Y N 158 
RML C25   C26    sing Y N 159 
RML N7    C27    sing Y N 160 
RML C21   C20    doub Y N 161 
RML C19   C26    sing Y N 162 
RML C19   N5     doub Y N 163 
RML C26   N8     doub Y N 164 
RML C27   C28    doub Y N 165 
RML C20   N5     sing Y N 166 
RML N5    RU     sing N N 167 
RML N8    C28    sing Y N 168 
RML N8    RU     sing N N 169 
RML C38   C37    doub Y N 170 
RML C38   N12    sing Y N 171 
RML C37   N11    sing Y N 172 
RML C12   N1     doub Y N 173 
RML C12   C11    sing Y N 174 
RML N12   RU     sing N N 175 
RML N12   C36    doub Y N 176 
RML RU    N1     sing N N 177 
RML RU    N2     sing N N 178 
RML RU    N9     sing N N 179 
RML N1    C10    sing Y N 180 
RML C11   C9     doub Y N 181 
RML N11   C35    doub Y N 182 
RML C36   C35    sing Y N 183 
RML C36   C29    sing Y N 184 
RML C9    C8     sing Y N 185 
RML C10   C8     doub Y N 186 
RML C10   C1     sing Y N 187 
RML C35   C34    sing Y N 188 
RML N2    C2     doub Y N 189 
RML N2    C1     sing Y N 190 
RML C2    C3     sing Y N 191 
RML C8    C7     sing Y N 192 
RML C1    C5     doub Y N 193 
RML N9    C29    doub Y N 194 
RML N9    C30    sing Y N 195 
RML C29   C32    sing Y N 196 
RML C34   C33    doub Y N 197 
RML C3    C4     doub Y N 198 
RML C7    N4     doub Y N 199 
RML C7    C6     sing Y N 200 
RML C30   C31    doub Y N 201 
RML C5    C4     sing Y N 202 
RML C5    C6     sing Y N 203 
RML N4    C13    sing Y N 204 
RML C6    N3     doub Y N 205 
RML C32   C33    sing Y N 206 
RML C32   N10    doub Y N 207 
RML C31   N10    sing Y N 208 
RML C13   C14    doub Y N 209 
RML C13   C15    sing Y N 210 
RML N3    C15    sing Y N 211 
RML C14   C18    sing Y N 212 
RML C15   C16    doub Y N 213 
RML C18   C52    sing N N 214 
RML C18   C17    doub Y N 215 
RML C16   C17    sing Y N 216 
RML C17   C53    sing N N 217 
RML C53   H1     sing N N 218 
RML C53   H2     sing N N 219 
RML C53   H3     sing N N 220 
RML C52   H4     sing N N 221 
RML C52   H5     sing N N 222 
RML C52   H6     sing N N 223 
RML C14   H7     sing N N 224 
RML C16   H8     sing N N 225 
RML C4    H9     sing N N 226 
RML C3    H10    sing N N 227 
RML C2    H11    sing N N 228 
RML C12   H12    sing N N 229 
RML C11   H13    sing N N 230 
RML C9    H14    sing N N 231 
RML C28   H15    sing N N 232 
RML C27   H16    sing N N 233 
RML C24   H17    sing N N 234 
RML C23   H18    sing N N 235 
RML C20   H19    sing N N 236 
RML C21   H20    sing N N 237 
RML C38   H21    sing N N 238 
RML C37   H22    sing N N 239 
RML C30   H23    sing N N 240 
RML C31   H24    sing N N 241 
RML C34   H25    sing N N 242 
RML C33   H26    sing N N 243 
# 
_ndb_struct_conf_na.entry_id   4E95 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 2 1_555 A DG 9 7_553 0.214  -0.045 0.056  -6.242  4.163  3.031  1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 
1 A DG 3 1_555 A DC 8 7_553 -0.398 -0.149 0.164  23.337  -5.180 1.536  2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 
1 A DG 4 1_555 A DC 7 7_553 -0.376 -0.064 -0.072 -10.683 -0.195 1.660  3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 
1 A DA 5 1_555 A DT 6 7_553 0.010  -0.149 0.309  -4.101  -8.512 -0.424 4 A_DA5:DT6_A A 5 ? A 6 ? 20 1 
1 A DT 6 1_555 A DA 5 7_553 -0.010 -0.149 0.309  4.101   -8.512 -0.424 5 A_DT6:DA5_A A 6 ? A 5 ? 20 1 
1 A DC 7 1_555 A DG 4 7_553 0.376  -0.064 -0.072 10.683  -0.195 1.660  6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 
1 A DC 8 1_555 A DG 3 7_553 0.398  -0.149 0.164  -23.337 -5.180 1.536  7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 
1 A DG 9 1_555 A DC 2 7_553 -0.214 -0.045 0.056  6.242   4.163  3.031  8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 2 1_555 A DG 9 7_553 A DG 3 1_555 A DC 8 7_553 -0.212 1.726  2.764 0.719  5.204  20.222 2.737  0.865  3.096 14.508 -2.005  
20.886 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DG 3 1_555 A DC 8 7_553 A DG 4 1_555 A DC 7 7_553 0.066  0.885  5.205 -2.837 50.314 13.478 -5.431 -0.438 2.239 75.875 4.278   
52.051 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DG 4 1_555 A DC 7 7_553 A DA 5 1_555 A DT 6 7_553 -1.136 0.333  3.243 -9.654 10.405 35.298 -0.888 0.447  3.391 16.366 15.185  
37.961 3 AA_DG4DA5:DT6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DA 5 1_555 A DT 6 7_553 A DT 6 1_555 A DA 5 7_553 0.000  -0.752 3.124 0.000  5.275  27.077 -2.779 0.000  2.927 11.131 0.000   
27.577 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DT 6 1_555 A DA 5 7_553 A DC 7 1_555 A DG 4 7_553 1.136  0.333  3.243 9.654  10.405 35.298 -0.888 -0.447 3.391 16.366 -15.185 
37.961 5 AA_DT6DC7:DG4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DC 7 1_555 A DG 4 7_553 A DC 8 1_555 A DG 3 7_553 -0.066 0.885  5.205 2.837  50.314 13.478 -5.431 0.438  2.239 75.875 -4.278  
52.051 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DC 8 1_555 A DG 3 7_553 A DG 9 1_555 A DC 2 7_553 0.212  1.726  2.764 -0.719 5.204  20.222 2.737  -0.865 3.096 14.508 2.005   
20.886 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
_atom_sites.entry_id                    4E95 
_atom_sites.fract_transf_matrix[1][1]   0.021079 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   -0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.021079 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   -0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.028960 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
N  
O  
P  
RU 
# 
loop_