HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAR-12 4EA0 TITLE CRYSTAL STRUCTURE OF DEHYDROSQUALENE SYNTHASE (CRTM) FROM S. AUREUS TITLE 2 COMPLEXED WITH DIPHOSPHATE AND QUINUCLIDINE BPH-651 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROSQUALENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4,4'-DIAPOPHYTOENE SYNTHASE, DAP SYNTHASE, DIAPOPHYTOENE COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.96; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CRTM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS QUINUCLIDINE INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.-Y.LIN,Y.-L.LIU,E.OLDFIELD REVDAT 4 28-FEB-24 4EA0 1 REMARK LINK REVDAT 3 30-MAY-12 4EA0 1 JRNL REVDAT 2 16-MAY-12 4EA0 1 JRNL REVDAT 1 25-APR-12 4EA0 0 JRNL AUTH F.Y.LIN,Y.L.LIU,K.LI,R.CAO,W.ZHU,J.AXELSON,R.PANG,E.OLDFIELD JRNL TITL HEAD-TO-HEAD PRENYL TRANFERASES: ANTI-INFECTIVE DRUG JRNL TITL 2 TARGETS. JRNL REF J.MED.CHEM. V. 55 4367 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22486710 JRNL DOI 10.1021/JM300208P REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 35058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4969 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6710 ; 0.692 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;35.846 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;20.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.645 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3802 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2834 ; 1.468 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4594 ; 2.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2135 ; 4.083 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2116 ; 6.081 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75M POTASSIUM SODIUM TARTRATE, 1MM REMARK 280 BPH-651 (LIGAND), 1MM DIPHOSPHATE, 2MM MGCL2, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.27400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.54800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.54800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.27400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 285 REMARK 465 ARG A 286 REMARK 465 ILE A 287 REMARK 465 HIS B 285 REMARK 465 ARG B 286 REMARK 465 ILE B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 205 N HIS B 207 1.78 REMARK 500 O SER B 234 NE2 GLN B 238 1.97 REMARK 500 O GLU A 213 O HOH A 463 2.07 REMARK 500 O HOH A 455 O HOH A 478 2.17 REMARK 500 OD1 ASP A 66 CB SER A 82 2.17 REMARK 500 O3 POP A 304 O HOH A 503 2.18 REMARK 500 O HOH A 487 O HOH A 489 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 459 O HOH B 448 4545 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -108.19 -85.41 REMARK 500 HIS A 116 76.18 -108.52 REMARK 500 ALA A 134 -36.97 -131.10 REMARK 500 PRO B 30 151.10 -44.62 REMARK 500 SER B 82 -96.72 -99.00 REMARK 500 ALA B 134 -41.63 -133.34 REMARK 500 GLU B 149 92.51 26.94 REMARK 500 GLU B 180 27.24 80.35 REMARK 500 GLU B 264 130.54 -176.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 131 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD1 REMARK 620 2 ASP A 52 OD1 91.9 REMARK 620 3 POP A 304 O2 97.9 162.8 REMARK 620 4 POP A 304 O5 84.6 77.4 89.5 REMARK 620 5 HOH A 422 O 169.5 83.7 88.7 103.6 REMARK 620 6 HOH A 427 O 82.0 107.8 87.5 165.8 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD2 REMARK 620 2 ASP A 52 OD1 90.5 REMARK 620 3 POP A 304 O5 92.4 81.1 REMARK 620 4 HOH A 401 O 87.3 84.2 165.4 REMARK 620 5 HOH A 402 O 98.2 170.7 101.4 93.1 REMARK 620 6 HOH A 487 O 162.1 77.4 98.5 78.5 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 168 OD1 REMARK 620 2 ASP A 172 OD2 83.3 REMARK 620 3 POP A 304 O6 99.9 172.2 REMARK 620 4 POP A 304 O1 101.6 89.9 82.5 REMARK 620 5 HOH A 403 O 165.2 83.4 94.1 84.8 REMARK 620 6 HOH A 404 O 90.4 100.7 86.5 165.0 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD2 REMARK 620 2 ASP B 52 OD2 91.1 REMARK 620 3 POP B 304 O2 90.0 78.4 REMARK 620 4 HOH B 401 O 91.3 164.9 86.7 REMARK 620 5 HOH B 402 O 94.9 94.4 171.4 100.2 REMARK 620 6 HOH B 424 O 174.4 92.8 94.8 85.9 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD1 REMARK 620 2 ASP B 52 OD2 97.2 REMARK 620 3 POP B 304 O6 100.9 159.4 REMARK 620 4 POP B 304 O2 92.0 75.8 93.7 REMARK 620 5 HOH B 429 O 173.6 82.3 80.8 94.1 REMARK 620 6 HOH B 482 O 89.3 91.0 98.9 166.8 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 168 OD1 REMARK 620 2 ASP B 172 OD2 96.6 REMARK 620 3 POP B 304 O3 100.7 160.2 REMARK 620 4 POP B 304 O5 116.9 81.3 82.2 REMARK 620 5 HOH B 406 O 98.4 102.5 84.6 143.9 REMARK 620 6 HOH B 444 O 160.2 70.3 95.2 76.7 71.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 651 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 651 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E9Z RELATED DB: PDB REMARK 900 RELATED ID: 4EA1 RELATED DB: PDB REMARK 900 RELATED ID: 4EA2 RELATED DB: PDB REMARK 900 RELATED ID: 4E9U RELATED DB: PDB DBREF 4EA0 A 1 287 UNP A9JQL9 CRTM_STAAU 1 287 DBREF 4EA0 B 1 287 UNP A9JQL9 CRTM_STAAU 1 287 SEQRES 1 A 287 MET THR MET MET ASP MET ASN PHE LYS TYR CYS HIS LYS SEQRES 2 A 287 ILE MET LYS LYS HIS SER LYS SER PHE SER TYR ALA PHE SEQRES 3 A 287 ASP LEU LEU PRO GLU ASP GLN ARG LYS ALA VAL TRP ALA SEQRES 4 A 287 ILE TYR ALA VAL CYS ARG LYS ILE ASP ASP SER ILE ASP SEQRES 5 A 287 VAL TYR GLY ASP ILE GLN PHE LEU ASN GLN ILE LYS GLU SEQRES 6 A 287 ASP ILE GLN SER ILE GLU LYS TYR PRO TYR GLU TYR HIS SEQRES 7 A 287 HIS PHE GLN SER ASP ARG ARG ILE MET MET ALA LEU GLN SEQRES 8 A 287 HIS VAL ALA GLN HIS LYS ASN ILE ALA PHE GLN SER PHE SEQRES 9 A 287 TYR ASN LEU ILE ASP THR VAL TYR LYS ASP GLN HIS PHE SEQRES 10 A 287 THR MET PHE GLU THR ASP ALA GLU LEU PHE GLY TYR CYS SEQRES 11 A 287 TYR GLY VAL ALA GLY THR VAL GLY GLU VAL LEU THR PRO SEQRES 12 A 287 ILE LEU SER ASP HIS GLU THR HIS GLN THR TYR ASP VAL SEQRES 13 A 287 ALA ARG ARG LEU GLY GLU SER LEU GLN LEU ILE ASN ILE SEQRES 14 A 287 LEU ARG ASP VAL GLY GLU ASP PHE GLU ASN GLU ARG ILE SEQRES 15 A 287 TYR PHE SER LYS GLN ARG LEU LYS GLN TYR GLU VAL ASP SEQRES 16 A 287 ILE ALA GLU VAL TYR GLN ASN GLY VAL ASN ASN HIS TYR SEQRES 17 A 287 ILE ASP LEU TRP GLU TYR TYR ALA ALA ILE ALA GLU LYS SEQRES 18 A 287 ASP PHE ARG ASP VAL MET ASP GLN ILE LYS VAL PHE SER SEQRES 19 A 287 ILE GLU ALA GLN PRO ILE ILE GLU LEU ALA ALA ARG ILE SEQRES 20 A 287 TYR ILE GLU ILE LEU ASP GLU VAL ARG GLN ALA ASN TYR SEQRES 21 A 287 THR LEU HIS GLU ARG VAL PHE VAL GLU LYS ARG LYS LYS SEQRES 22 A 287 ALA LYS LEU PHE HIS GLU ILE ASN SER LYS TYR HIS ARG SEQRES 23 A 287 ILE SEQRES 1 B 287 MET THR MET MET ASP MET ASN PHE LYS TYR CYS HIS LYS SEQRES 2 B 287 ILE MET LYS LYS HIS SER LYS SER PHE SER TYR ALA PHE SEQRES 3 B 287 ASP LEU LEU PRO GLU ASP GLN ARG LYS ALA VAL TRP ALA SEQRES 4 B 287 ILE TYR ALA VAL CYS ARG LYS ILE ASP ASP SER ILE ASP SEQRES 5 B 287 VAL TYR GLY ASP ILE GLN PHE LEU ASN GLN ILE LYS GLU SEQRES 6 B 287 ASP ILE GLN SER ILE GLU LYS TYR PRO TYR GLU TYR HIS SEQRES 7 B 287 HIS PHE GLN SER ASP ARG ARG ILE MET MET ALA LEU GLN SEQRES 8 B 287 HIS VAL ALA GLN HIS LYS ASN ILE ALA PHE GLN SER PHE SEQRES 9 B 287 TYR ASN LEU ILE ASP THR VAL TYR LYS ASP GLN HIS PHE SEQRES 10 B 287 THR MET PHE GLU THR ASP ALA GLU LEU PHE GLY TYR CYS SEQRES 11 B 287 TYR GLY VAL ALA GLY THR VAL GLY GLU VAL LEU THR PRO SEQRES 12 B 287 ILE LEU SER ASP HIS GLU THR HIS GLN THR TYR ASP VAL SEQRES 13 B 287 ALA ARG ARG LEU GLY GLU SER LEU GLN LEU ILE ASN ILE SEQRES 14 B 287 LEU ARG ASP VAL GLY GLU ASP PHE GLU ASN GLU ARG ILE SEQRES 15 B 287 TYR PHE SER LYS GLN ARG LEU LYS GLN TYR GLU VAL ASP SEQRES 16 B 287 ILE ALA GLU VAL TYR GLN ASN GLY VAL ASN ASN HIS TYR SEQRES 17 B 287 ILE ASP LEU TRP GLU TYR TYR ALA ALA ILE ALA GLU LYS SEQRES 18 B 287 ASP PHE ARG ASP VAL MET ASP GLN ILE LYS VAL PHE SER SEQRES 19 B 287 ILE GLU ALA GLN PRO ILE ILE GLU LEU ALA ALA ARG ILE SEQRES 20 B 287 TYR ILE GLU ILE LEU ASP GLU VAL ARG GLN ALA ASN TYR SEQRES 21 B 287 THR LEU HIS GLU ARG VAL PHE VAL GLU LYS ARG LYS LYS SEQRES 22 B 287 ALA LYS LEU PHE HIS GLU ILE ASN SER LYS TYR HIS ARG SEQRES 23 B 287 ILE HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET POP A 304 9 HET TLA A 305 10 HET 651 A 306 21 HET MG B 301 1 HET MG B 302 1 HET MG B 303 1 HET POP B 304 9 HET 651 B 305 21 HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- HETNAM TLA L(+)-TARTARIC ACID HETNAM 651 (3R)-3-BIPHENYL-4-YL-1-AZABICYCLO[2.2.2]OCTAN-3-OL FORMUL 3 MG 6(MG 2+) FORMUL 6 POP 2(H2 O7 P2 2-) FORMUL 7 TLA C4 H6 O6 FORMUL 8 651 2(C19 H21 N O) FORMUL 14 HOH *186(H2 O) HELIX 1 1 THR A 2 SER A 19 1 18 HELIX 2 2 SER A 19 ASP A 27 1 9 HELIX 3 3 PRO A 30 VAL A 53 1 24 HELIX 4 4 ASP A 56 TYR A 73 1 18 HELIX 5 5 ASP A 83 LYS A 97 1 15 HELIX 6 6 ALA A 100 ASP A 114 1 15 HELIX 7 7 GLN A 115 PHE A 117 5 3 HELIX 8 8 THR A 122 LEU A 141 1 20 HELIX 9 9 LEU A 141 SER A 146 1 6 HELIX 10 10 THR A 150 ASP A 172 1 23 HELIX 11 11 ASP A 172 GLU A 178 1 7 HELIX 12 12 SER A 185 TYR A 192 1 8 HELIX 13 13 ASP A 195 GLY A 203 1 9 HELIX 14 14 ASN A 205 GLN A 229 1 25 HELIX 15 15 ILE A 230 PHE A 233 5 4 HELIX 16 16 GLU A 236 ALA A 258 1 23 HELIX 17 17 GLU A 269 SER A 282 1 14 HELIX 18 18 THR B 2 SER B 19 1 18 HELIX 19 19 SER B 19 ASP B 27 1 9 HELIX 20 20 PRO B 30 VAL B 53 1 24 HELIX 21 21 ASP B 56 TYR B 73 1 18 HELIX 22 22 ASP B 83 LYS B 97 1 15 HELIX 23 23 ALA B 100 ASP B 114 1 15 HELIX 24 24 GLN B 115 PHE B 117 5 3 HELIX 25 25 THR B 122 ALA B 134 1 13 HELIX 26 26 ALA B 134 THR B 142 1 9 HELIX 27 27 THR B 150 ASP B 172 1 23 HELIX 28 28 ASP B 172 ASN B 179 1 8 HELIX 29 29 SER B 185 GLU B 193 1 9 HELIX 30 30 ASP B 195 GLY B 203 1 9 HELIX 31 31 ASN B 205 GLN B 229 1 25 HELIX 32 32 ILE B 230 PHE B 233 5 4 HELIX 33 33 GLU B 236 ALA B 258 1 23 HELIX 34 34 GLU B 269 TYR B 284 1 16 LINK OD1 ASP A 48 MG MG A 301 1555 1555 1.95 LINK OD2 ASP A 48 MG MG A 303 1555 1555 2.00 LINK OD1 ASP A 52 MG MG A 301 1555 1555 2.16 LINK OD1 ASP A 52 MG MG A 303 1555 1555 2.29 LINK OD1 ASN A 168 MG MG A 302 1555 1555 2.12 LINK OD2 ASP A 172 MG MG A 302 1555 1555 1.93 LINK MG MG A 301 O2 POP A 304 1555 1555 2.02 LINK MG MG A 301 O5 POP A 304 1555 1555 2.20 LINK MG MG A 301 O HOH A 422 1555 1555 1.95 LINK MG MG A 301 O HOH A 427 1555 1555 2.21 LINK MG MG A 302 O6 POP A 304 1555 1555 2.16 LINK MG MG A 302 O1 POP A 304 1555 1555 2.25 LINK MG MG A 302 O HOH A 403 1555 1555 2.06 LINK MG MG A 302 O HOH A 404 1555 1555 2.33 LINK MG MG A 303 O5 POP A 304 1555 1555 1.87 LINK MG MG A 303 O HOH A 401 1555 1555 1.91 LINK MG MG A 303 O HOH A 402 1555 1555 2.17 LINK MG MG A 303 O HOH A 487 1555 1555 2.07 LINK OD2 ASP B 48 MG MG B 302 1555 1555 2.05 LINK OD1 ASP B 48 MG MG B 303 1555 1555 1.99 LINK OD2 ASP B 52 MG MG B 302 1555 1555 2.13 LINK OD2 ASP B 52 MG MG B 303 1555 1555 2.04 LINK OD1 ASN B 168 MG MG B 301 1555 1555 1.92 LINK OD2 ASP B 172 MG MG B 301 1555 1555 2.34 LINK MG MG B 301 O3 POP B 304 1555 1555 2.19 LINK MG MG B 301 O5 POP B 304 1555 1555 2.41 LINK MG MG B 301 O HOH B 406 1555 1555 2.42 LINK MG MG B 301 O HOH B 444 1555 1555 1.62 LINK MG MG B 302 O2 POP B 304 1555 1555 1.98 LINK MG MG B 302 O HOH B 401 1555 1555 2.06 LINK MG MG B 302 O HOH B 402 1555 1555 1.87 LINK MG MG B 302 O HOH B 424 1555 1555 2.05 LINK MG MG B 303 O6 POP B 304 1555 1555 1.89 LINK MG MG B 303 O2 POP B 304 1555 1555 2.19 LINK MG MG B 303 O HOH B 429 1555 1555 1.99 LINK MG MG B 303 O HOH B 482 1555 1555 2.08 SITE 1 AC1 7 ARG A 45 ASP A 48 ASP A 52 MG A 303 SITE 2 AC1 7 POP A 304 HOH A 422 HOH A 427 SITE 1 AC2 5 ASN A 168 ASP A 172 POP A 304 HOH A 403 SITE 2 AC2 5 HOH A 404 SITE 1 AC3 7 ASP A 48 ASP A 52 MG A 301 POP A 304 SITE 2 AC3 7 HOH A 401 HOH A 402 HOH A 487 SITE 1 AC4 18 ARG A 45 ASP A 48 ASP A 52 GLN A 165 SITE 2 AC4 18 ASN A 168 ASP A 172 MG A 301 MG A 302 SITE 3 AC4 18 MG A 303 651 A 306 HOH A 402 HOH A 403 SITE 4 AC4 18 HOH A 404 HOH A 405 HOH A 422 HOH A 427 SITE 5 AC4 18 HOH A 487 HOH A 503 SITE 1 AC5 8 HIS A 18 SER A 19 LYS A 20 SER A 21 SITE 2 AC5 8 ARG A 171 TYR A 248 ARG A 265 HOH A 503 SITE 1 AC6 11 PHE A 22 ARG A 45 ASP A 48 VAL A 133 SITE 2 AC6 11 ALA A 134 GLY A 138 GLY A 161 LEU A 164 SITE 3 AC6 11 GLN A 165 POP A 304 HOH A 501 SITE 1 AC7 5 ASN B 168 ASP B 172 POP B 304 HOH B 406 SITE 2 AC7 5 HOH B 444 SITE 1 AC8 7 ASP B 48 ASP B 52 MG B 303 POP B 304 SITE 2 AC8 7 HOH B 401 HOH B 402 HOH B 424 SITE 1 AC9 7 ARG B 45 ASP B 48 ASP B 52 MG B 302 SITE 2 AC9 7 POP B 304 HOH B 429 HOH B 482 SITE 1 BC1 18 ARG B 45 ASP B 48 ASP B 52 GLN B 165 SITE 2 BC1 18 ASN B 168 ASP B 172 ARG B 265 MG B 301 SITE 3 BC1 18 MG B 302 MG B 303 651 B 305 HOH B 401 SITE 4 BC1 18 HOH B 415 HOH B 424 HOH B 427 HOH B 429 SITE 5 BC1 18 HOH B 444 HOH B 482 SITE 1 BC2 10 PHE B 22 ARG B 45 ASP B 48 VAL B 133 SITE 2 BC2 10 ALA B 134 VAL B 137 GLY B 138 LEU B 164 SITE 3 BC2 10 GLN B 165 POP B 304 CRYST1 80.324 80.324 180.822 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012450 0.007188 0.000000 0.00000 SCALE2 0.000000 0.014376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005530 0.00000