HEADER APOPTOSIS INHIBITOR 23-MAR-12 4EB9 TITLE CIAP1-BIR3 IN COMPLEX WITH A DIVALENT SMAC MIMETIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: BIR3 DOMAIN (UNP RESIDUES 251-363); COMPND 5 SYNONYM: C-IAP1, IAP HOMOLOG B, INHIBITOR OF APOPTOSIS PROTEIN 2, COMPND 6 IAP-2, HIAP-2, HIAP2, RING FINGER PROTEIN 48, TNFR2-TRAF-SIGNALING COMPND 7 COMPLEX PROTEIN 2; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIRC2, API1, IAP2, MIHB, RNF48; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER, APOPTOSIS INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.COSSU,E.MASTRANGELO,M.BOLOGNESI,M.MILANI REVDAT 2 13-SEP-23 4EB9 1 REMARK SEQADV LINK REVDAT 1 05-DEC-12 4EB9 0 JRNL AUTH F.COSSU,M.MILANI,P.VACHETTE,F.MALVEZZI,S.GRASSI,D.LECIS, JRNL AUTH 2 D.DELIA,C.DRAGO,P.SENECI,M.BOLOGNESI,E.MASTRANGELO JRNL TITL STRUCTURAL INSIGHT INTO INHIBITOR OF APOPTOSIS PROTEINS JRNL TITL 2 RECOGNITION BY A POTENT DIVALENT SMAC-MIMETIC. JRNL REF PLOS ONE V. 7 49527 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23166698 JRNL DOI 10.1371/JOURNAL.PONE.0049527 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 17648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.753 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3668 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4977 ; 1.187 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 4.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;36.631 ;23.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;17.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.268 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2890 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2059 ; 1.004 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3314 ; 1.699 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 2.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 3.763 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 355 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5254 -3.7468 10.8446 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1428 REMARK 3 T33: 0.0866 T12: 0.0074 REMARK 3 T13: 0.0299 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.4261 L22: 3.8115 REMARK 3 L33: 1.2796 L12: 0.5197 REMARK 3 L13: -0.0506 L23: 1.1801 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: 0.0203 S13: -0.0452 REMARK 3 S21: 0.0326 S22: -0.0020 S23: -0.1251 REMARK 3 S31: -0.0208 S32: -0.1177 S33: -0.1156 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 254 B 354 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0078 4.6487 37.3913 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.1298 REMARK 3 T33: 0.0885 T12: 0.0143 REMARK 3 T13: 0.0573 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.9855 L22: 3.9457 REMARK 3 L33: 2.8548 L12: -0.3307 REMARK 3 L13: 1.2980 L23: -0.2419 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.0428 S13: 0.0178 REMARK 3 S21: -0.0074 S22: -0.0240 S23: -0.0014 REMARK 3 S31: -0.0813 S32: -0.0227 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 255 C 356 REMARK 3 RESIDUE RANGE : C 401 C 401 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1371 -34.5996 14.0871 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.1197 REMARK 3 T33: 0.1043 T12: -0.0534 REMARK 3 T13: 0.0037 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.6449 L22: 5.1814 REMARK 3 L33: 2.9479 L12: -1.1981 REMARK 3 L13: 1.8683 L23: -1.6351 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: 0.0377 S13: -0.1133 REMARK 3 S21: 0.0888 S22: -0.0302 S23: -0.2171 REMARK 3 S31: 0.0670 S32: 0.1208 S33: -0.1116 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 254 D 356 REMARK 3 RESIDUE RANGE : D 401 D 401 REMARK 3 ORIGIN FOR THE GROUP (A): 48.6091 -26.0783 33.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.1272 REMARK 3 T33: 0.1243 T12: 0.0332 REMARK 3 T13: -0.0103 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.7413 L22: 5.2848 REMARK 3 L33: 3.1903 L12: 0.5345 REMARK 3 L13: 1.0478 L23: 1.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.1940 S12: -0.0856 S13: -0.2339 REMARK 3 S21: -0.1180 S22: 0.0052 S23: -0.0263 REMARK 3 S31: 0.1923 S32: -0.1558 S33: -0.1992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4EB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.203 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3MUP, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG3350, 0.1 M BIS-TRIS, PH 5.2, REMARK 280 0.2 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.55500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.55500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 SER A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 THR A 250 REMARK 465 LEU A 251 REMARK 465 ARG A 252 REMARK 465 PHE A 253 REMARK 465 THR A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 GLU A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 MET B 244 REMARK 465 GLU B 245 REMARK 465 ASN B 246 REMARK 465 SER B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 THR B 250 REMARK 465 LEU B 251 REMARK 465 ARG B 252 REMARK 465 PHE B 253 REMARK 465 SER B 355 REMARK 465 THR B 356 REMARK 465 SER B 357 REMARK 465 LEU B 358 REMARK 465 GLU B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 MET C 244 REMARK 465 GLU C 245 REMARK 465 ASN C 246 REMARK 465 SER C 247 REMARK 465 LEU C 248 REMARK 465 GLU C 249 REMARK 465 THR C 250 REMARK 465 LEU C 251 REMARK 465 ARG C 252 REMARK 465 PHE C 253 REMARK 465 SER C 254 REMARK 465 SER C 357 REMARK 465 LEU C 358 REMARK 465 GLU C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 465 HIS C 365 REMARK 465 MET D 244 REMARK 465 GLU D 245 REMARK 465 ASN D 246 REMARK 465 SER D 247 REMARK 465 LEU D 248 REMARK 465 GLU D 249 REMARK 465 THR D 250 REMARK 465 LEU D 251 REMARK 465 ARG D 252 REMARK 465 PHE D 253 REMARK 465 SER D 357 REMARK 465 LEU D 358 REMARK 465 GLU D 359 REMARK 465 HIS D 360 REMARK 465 HIS D 361 REMARK 465 HIS D 362 REMARK 465 HIS D 363 REMARK 465 HIS D 364 REMARK 465 HIS D 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 295 -129.39 43.84 REMARK 500 CYS A 302 -60.44 -97.36 REMARK 500 ASN B 295 -132.23 65.63 REMARK 500 HIS B 348 71.62 -115.18 REMARK 500 PRO C 278 35.00 -81.54 REMARK 500 ASN C 295 -123.29 44.88 REMARK 500 CYS C 302 -70.76 -109.99 REMARK 500 HIS C 348 69.50 -118.90 REMARK 500 ASN D 295 -125.51 64.35 REMARK 500 CYS D 309 64.71 63.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 CYS A 303 SG 106.5 REMARK 620 3 HIS A 320 NE2 104.7 110.4 REMARK 620 4 CYS A 327 SG 117.5 104.7 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 303 SG REMARK 620 2 HIS B 320 NE2 115.0 REMARK 620 3 CYS B 327 SG 116.2 104.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 300 SG REMARK 620 2 CYS C 303 SG 114.6 REMARK 620 3 HIS C 320 NE2 102.0 106.0 REMARK 620 4 CYS C 327 SG 120.3 104.4 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 300 SG REMARK 620 2 CYS D 303 SG 108.4 REMARK 620 3 HIS D 320 NE2 112.2 113.8 REMARK 620 4 CYS D 327 SG 109.0 104.6 108.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0O6 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0O6 D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MUP RELATED DB: PDB REMARK 900 CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC037 REMARK 900 RELATED ID: 3OZ1 RELATED DB: PDB REMARK 900 CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC066 REMARK 900 RELATED ID: 4EC4 RELATED DB: PDB DBREF 4EB9 A 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 4EB9 B 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 4EB9 C 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 4EB9 D 245 357 UNP Q13490 BIRC2_HUMAN 251 363 SEQADV 4EB9 MET A 244 UNP Q13490 INITIATING METHIONINE SEQADV 4EB9 LEU A 358 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 GLU A 359 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 360 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 361 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 362 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 363 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 364 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS A 365 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 MET B 244 UNP Q13490 INITIATING METHIONINE SEQADV 4EB9 LEU B 358 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 GLU B 359 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 360 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 361 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 362 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 363 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 364 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS B 365 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 MET C 244 UNP Q13490 INITIATING METHIONINE SEQADV 4EB9 LEU C 358 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 GLU C 359 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 360 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 361 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 362 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 363 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 364 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS C 365 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 MET D 244 UNP Q13490 INITIATING METHIONINE SEQADV 4EB9 LEU D 358 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 GLU D 359 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 360 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 361 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 362 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 363 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 364 UNP Q13490 EXPRESSION TAG SEQADV 4EB9 HIS D 365 UNP Q13490 EXPRESSION TAG SEQRES 1 A 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 A 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 A 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 A 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 A 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 A 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 A 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 A 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 A 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 B 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 B 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 B 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 B 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 B 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 B 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 B 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 B 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 C 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 C 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 C 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 C 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 C 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 C 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 C 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 C 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 D 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 D 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 D 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 D 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 D 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 D 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 D 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 D 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN B 401 1 HET ZN C 401 1 HET 0O6 C 402 86 HET ZN D 401 1 HET 0O6 D 402 86 HETNAM ZN ZINC ION HETNAM 0O6 (3S,6S,7S,9AS,3'S,6'S,7'S,9A'S)-N,N'-(BENZENE-1,4- HETNAM 2 0O6 DIYLBIS{BUTANE-4,1-DIYL-1H-1,2,3-TRIAZOLE-1,4- HETNAM 3 0O6 DIYL[(S)-PHENYLMETHANEDIYL]})BIS[7-(HYDROXYMETHYL)-6- HETNAM 4 0O6 {[(2S)-2-(METHYLAMINO)BUTANOYL]AMINO}-5-OXOOCTAHYDRO- HETNAM 5 0O6 1H-PYRROLO[1,2-A]AZEPINE-3-CARBOXAMIDE] FORMUL 5 ZN 4(ZN 2+) FORMUL 8 0O6 2(C64 H88 N14 O8) FORMUL 11 HOH *111(H2 O) HELIX 1 1 ASN A 257 GLN A 261 5 5 HELIX 2 2 THR A 262 THR A 269 1 8 HELIX 3 3 PHE A 270 TRP A 273 5 4 HELIX 4 4 GLN A 280 ALA A 287 1 8 HELIX 5 5 ASP A 315 PHE A 324 1 10 HELIX 6 6 CYS A 327 GLY A 335 1 9 HELIX 7 7 GLY A 335 TYR A 346 1 12 HELIX 8 8 HIS A 348 LEU A 354 1 7 HELIX 9 9 THR B 262 THR B 269 1 8 HELIX 10 10 PHE B 270 TRP B 273 5 4 HELIX 11 11 GLN B 280 ALA B 287 1 8 HELIX 12 12 ASP B 315 PHE B 324 1 10 HELIX 13 13 CYS B 327 GLY B 335 1 9 HELIX 14 14 GLY B 335 TYR B 346 1 12 HELIX 15 15 LEU B 349 LEU B 354 1 6 HELIX 16 16 ASN C 257 GLN C 261 5 5 HELIX 17 17 THR C 262 THR C 269 1 8 HELIX 18 18 GLN C 280 ALA C 287 1 8 HELIX 19 19 ASP C 315 PHE C 324 1 10 HELIX 20 20 CYS C 327 TYR C 346 1 20 HELIX 21 21 HIS C 348 LEU C 354 1 7 HELIX 22 22 THR D 262 THR D 269 1 8 HELIX 23 23 GLN D 280 ALA D 287 1 8 HELIX 24 24 ASP D 315 PHE D 324 1 10 HELIX 25 25 CYS D 327 GLY D 335 1 9 HELIX 26 26 GLY D 335 TYR D 346 1 12 HELIX 27 27 HIS D 348 LEU D 354 1 7 SHEET 1 A 3 PHE A 289 TYR A 291 0 SHEET 2 A 3 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290 SHEET 3 A 3 GLY A 306 LEU A 307 -1 O LEU A 307 N VAL A 298 SHEET 1 B 3 PHE B 289 TYR B 291 0 SHEET 2 B 3 VAL B 298 CYS B 300 -1 O LYS B 299 N TYR B 290 SHEET 3 B 3 GLY B 306 LEU B 307 -1 O LEU B 307 N VAL B 298 SHEET 1 C 3 PHE C 289 TYR C 291 0 SHEET 2 C 3 VAL C 298 CYS C 300 -1 O LYS C 299 N TYR C 290 SHEET 3 C 3 GLY C 306 LEU C 307 -1 O LEU C 307 N VAL C 298 SHEET 1 D 3 PHE D 289 TYR D 291 0 SHEET 2 D 3 VAL D 298 CYS D 300 -1 O LYS D 299 N TYR D 290 SHEET 3 D 3 GLY D 306 LEU D 307 -1 O LEU D 307 N VAL D 298 LINK SG CYS A 300 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 303 ZN ZN A 401 1555 1555 2.32 LINK NE2 HIS A 320 ZN ZN A 401 1555 1555 2.03 LINK SG CYS A 327 ZN ZN A 401 1555 1555 2.45 LINK SG CYS B 303 ZN ZN B 401 1555 1555 2.39 LINK NE2 HIS B 320 ZN ZN B 401 1555 1555 2.04 LINK SG CYS B 327 ZN ZN B 401 1555 1555 2.22 LINK SG CYS C 300 ZN ZN C 401 1555 1555 2.24 LINK SG CYS C 303 ZN ZN C 401 1555 1555 2.28 LINK NE2 HIS C 320 ZN ZN C 401 1555 1555 2.12 LINK SG CYS C 327 ZN ZN C 401 1555 1555 2.16 LINK SG CYS D 300 ZN ZN D 401 1555 1555 2.41 LINK SG CYS D 303 ZN ZN D 401 1555 1555 2.17 LINK NE2 HIS D 320 ZN ZN D 401 1555 1555 2.04 LINK SG CYS D 327 ZN ZN D 401 1555 1555 2.35 SITE 1 AC1 4 CYS A 300 CYS A 303 HIS A 320 CYS A 327 SITE 1 AC2 4 CYS B 300 CYS B 303 HIS B 320 CYS B 327 SITE 1 AC3 4 CYS C 300 CYS C 303 HIS C 320 CYS C 327 SITE 1 AC4 21 ASP A 297 VAL A 298 LYS A 299 GLY A 306 SITE 2 AC4 21 LEU A 307 ARG A 308 CYS A 309 ASP A 314 SITE 3 AC4 21 GLU A 319 TRP A 323 LEU A 353 ASP C 297 SITE 4 AC4 21 GLY C 306 LEU C 307 ARG C 308 CYS C 309 SITE 5 AC4 21 GLU C 311 ASP C 314 GLU C 319 TRP C 323 SITE 6 AC4 21 THR C 356 SITE 1 AC5 4 CYS D 300 CYS D 303 HIS D 320 CYS D 327 SITE 1 AC6 20 ASP B 297 GLY B 306 LEU B 307 ARG B 308 SITE 2 AC6 20 CYS B 309 ASP B 314 GLU B 319 TRP B 323 SITE 3 AC6 20 LEU B 353 ASP D 297 GLY D 306 LEU D 307 SITE 4 AC6 20 ARG D 308 CYS D 309 ASP D 314 GLU D 319 SITE 5 AC6 20 TRP D 323 LEU D 353 HOH D 525 HOH D 529 CRYST1 79.110 81.310 96.880 90.00 95.67 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012641 0.000000 0.001255 0.00000 SCALE2 0.000000 0.012299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010373 0.00000