HEADER HYDROLASE 26-MAR-12 4ECP TITLE X-RAY CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATE PPA FROM TITLE 2 MYCOBACTERIUM LEPRAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYROPHOSPHATE PHOSPHO-HYDROLASE, PPASE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM LEPRAE; SOURCE 3 ORGANISM_TAXID: 1769; SOURCE 4 GENE: PPA, ML0210, MLCB2548.21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SSGCID,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 3 13-SEP-23 4ECP 1 REMARK SEQADV REVDAT 2 24-JAN-18 4ECP 1 AUTHOR REVDAT 1 18-APR-12 4ECP 0 JRNL AUTH J.W.FAIRMAN,J.ABENDROTH,B.L.STAKER,L.STEWART JRNL TITL X-RAY CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATE PPA FROM JRNL TITL 2 MYCOBACTERIUM LEPRAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : -0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2682 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3649 ; 1.396 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;24.877 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;11.893 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;11.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2111 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0463 8.6236 10.4808 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.1237 REMARK 3 T33: 0.0794 T12: -0.0049 REMARK 3 T13: -0.0259 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9773 L22: 1.4953 REMARK 3 L33: 1.8273 L12: -0.4757 REMARK 3 L13: 0.1525 L23: -0.4617 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.2496 S13: 0.0782 REMARK 3 S21: 0.1751 S22: 0.0896 S23: 0.0219 REMARK 3 S31: -0.0759 S32: -0.2799 S33: -0.0890 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4790 2.0094 14.3528 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.1000 REMARK 3 T33: 0.0870 T12: -0.0248 REMARK 3 T13: -0.0460 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.0579 L22: 1.7028 REMARK 3 L33: 3.3448 L12: 0.0091 REMARK 3 L13: -0.8484 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.3849 S13: 0.1504 REMARK 3 S21: 0.1970 S22: 0.0421 S23: -0.0369 REMARK 3 S31: -0.0436 S32: -0.1094 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9909 9.6326 11.5683 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.2036 REMARK 3 T33: 0.1500 T12: -0.0055 REMARK 3 T13: -0.0508 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.4550 L22: 8.5706 REMARK 3 L33: 1.6713 L12: 1.0436 REMARK 3 L13: 0.2124 L23: -0.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.2598 S13: 0.1084 REMARK 3 S21: 0.3207 S22: -0.0749 S23: 0.2526 REMARK 3 S31: -0.1024 S32: -0.0802 S33: 0.0566 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4562 7.2885 3.6981 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0860 REMARK 3 T33: 0.1001 T12: -0.0096 REMARK 3 T13: -0.0304 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.7497 L22: 2.7472 REMARK 3 L33: 1.7574 L12: -0.9169 REMARK 3 L13: 0.2060 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: 0.0434 S13: -0.0290 REMARK 3 S21: 0.0254 S22: -0.0674 S23: -0.0909 REMARK 3 S31: 0.0544 S32: 0.0714 S33: 0.0255 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4604 4.0479 21.7499 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.2812 REMARK 3 T33: 0.1311 T12: -0.0348 REMARK 3 T13: -0.1413 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 11.7145 L22: 3.7979 REMARK 3 L33: 15.3757 L12: -1.7453 REMARK 3 L13: -8.0147 L23: 2.9714 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -1.2125 S13: 0.0555 REMARK 3 S21: 0.5900 S22: -0.0365 S23: -0.5632 REMARK 3 S31: 0.1497 S32: 0.4737 S33: -0.0034 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 31 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0207 8.8040 -20.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.0815 REMARK 3 T33: 0.1018 T12: 0.0243 REMARK 3 T13: 0.0158 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.9593 L22: 3.1321 REMARK 3 L33: 0.5538 L12: -1.0492 REMARK 3 L13: 0.2103 L23: -0.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: 0.2369 S13: 0.0353 REMARK 3 S21: -0.3539 S22: -0.1002 S23: -0.2101 REMARK 3 S31: 0.1999 S32: 0.0993 S33: -0.0234 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3455 15.3962 -19.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.0599 REMARK 3 T33: 0.0986 T12: -0.0031 REMARK 3 T13: 0.0288 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.2316 L22: 1.8292 REMARK 3 L33: 4.2786 L12: -1.3476 REMARK 3 L13: 2.2665 L23: -1.7556 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: 0.2666 S13: 0.1507 REMARK 3 S21: -0.3340 S22: -0.0913 S23: -0.2090 REMARK 3 S31: 0.2114 S32: 0.2803 S33: -0.0682 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2367 20.4851 -16.5713 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0679 REMARK 3 T33: 0.0833 T12: -0.0030 REMARK 3 T13: 0.0047 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 1.5492 L22: 3.6271 REMARK 3 L33: 1.5769 L12: 1.0371 REMARK 3 L13: 0.4219 L23: -0.2022 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: 0.1442 S13: 0.0299 REMARK 3 S21: -0.1113 S22: -0.0732 S23: -0.0242 REMARK 3 S31: 0.1176 S32: -0.0241 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9987 20.6787 -9.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0607 REMARK 3 T33: 0.1028 T12: -0.0168 REMARK 3 T13: -0.0115 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 8.1376 L22: 5.1198 REMARK 3 L33: 1.6103 L12: -5.3047 REMARK 3 L13: 2.3438 L23: -2.1031 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0980 S13: 0.0853 REMARK 3 S21: -0.0187 S22: -0.0028 S23: -0.1302 REMARK 3 S31: -0.0370 S32: 0.1908 S33: 0.0319 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9281 27.0873 -24.7245 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.0848 REMARK 3 T33: 0.1221 T12: 0.0010 REMARK 3 T13: 0.0834 T23: 0.0782 REMARK 3 L TENSOR REMARK 3 L11: 2.6097 L22: 5.1725 REMARK 3 L33: 4.3545 L12: 0.0385 REMARK 3 L13: -0.3789 L23: -0.4562 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: 0.3386 S13: 0.2323 REMARK 3 S21: -0.6228 S22: -0.0792 S23: -0.3627 REMARK 3 S31: 0.0460 S32: 0.2055 S33: 0.1566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4ECP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, 100 MM CAPS PH 10.50, 35.04 REMARK 280 MG/ML MYLEA.01382.A.A1 PW34776, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.59000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.98165 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.11333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.59000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.98165 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.11333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.59000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.98165 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.11333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.96331 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.22667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.96331 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.22667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.96331 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 HIS A 162 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 HIS A 100 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 0 CG SD CE REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ASN B 98 CG OD1 ND2 REMARK 470 HIS B 100 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 13 O HOH A 309 2.15 REMARK 500 OE1 GLN B 13 O HOH B 343 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 -158.97 -101.07 REMARK 500 ASP A 84 -158.92 -130.29 REMARK 500 LEU B 66 -159.88 -100.73 REMARK 500 ASP B 84 -158.46 -126.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYLEA.01382.A RELATED DB: TARGETTRACK DBREF 4ECP A 2 162 UNP O69540 IPYR_MYCLE 2 162 DBREF 4ECP B 2 162 UNP O69540 IPYR_MYCLE 2 162 SEQADV 4ECP GLY A -4 UNP O69540 EXPRESSION TAG SEQADV 4ECP PRO A -3 UNP O69540 EXPRESSION TAG SEQADV 4ECP GLY A -2 UNP O69540 EXPRESSION TAG SEQADV 4ECP SER A -1 UNP O69540 EXPRESSION TAG SEQADV 4ECP MET A 0 UNP O69540 EXPRESSION TAG SEQADV 4ECP VAL A 1 UNP O69540 EXPRESSION TAG SEQADV 4ECP GLY B -4 UNP O69540 EXPRESSION TAG SEQADV 4ECP PRO B -3 UNP O69540 EXPRESSION TAG SEQADV 4ECP GLY B -2 UNP O69540 EXPRESSION TAG SEQADV 4ECP SER B -1 UNP O69540 EXPRESSION TAG SEQADV 4ECP MET B 0 UNP O69540 EXPRESSION TAG SEQADV 4ECP VAL B 1 UNP O69540 EXPRESSION TAG SEQRES 1 A 167 GLY PRO GLY SER MET VAL GLN PHE ASP VAL THR ILE GLU SEQRES 2 A 167 ILE PRO LYS GLY GLN ARG ASN LYS TYR GLU VAL ASP HIS SEQRES 3 A 167 LYS THR GLY ARG VAL ARG LEU ASP ARG TYR LEU TYR THR SEQRES 4 A 167 PRO MET ALA TYR PRO THR ASP TYR GLY PHE ILE GLU ASP SEQRES 5 A 167 THR LEU GLY GLU ASP GLY ASP PRO LEU ASP ALA LEU VAL SEQRES 6 A 167 LEU LEU PRO GLU PRO LEU PHE PRO GLY VAL LEU VAL GLU SEQRES 7 A 167 ALA ARG PRO VAL GLY MET PHE ARG MET VAL ASP GLU HIS SEQRES 8 A 167 GLY GLY ASP ASP LYS VAL LEU CYS VAL PRO VAL ASN ASP SEQRES 9 A 167 HIS ARG TRP ASP HIS ILE HIS GLY ILE ILE ASP VAL PRO SEQRES 10 A 167 THR PHE GLU LEU ASP ALA ILE LYS HIS PHE PHE VAL HIS SEQRES 11 A 167 TYR LYS ASP LEU GLU PRO GLY LYS PHE VAL LYS ALA ALA SEQRES 12 A 167 ASP TRP VAL GLY ARG ASP GLU ALA GLU ALA GLU VAL GLN SEQRES 13 A 167 ARG SER VAL GLU ARG PHE LYS ALA GLY GLY HIS SEQRES 1 B 167 GLY PRO GLY SER MET VAL GLN PHE ASP VAL THR ILE GLU SEQRES 2 B 167 ILE PRO LYS GLY GLN ARG ASN LYS TYR GLU VAL ASP HIS SEQRES 3 B 167 LYS THR GLY ARG VAL ARG LEU ASP ARG TYR LEU TYR THR SEQRES 4 B 167 PRO MET ALA TYR PRO THR ASP TYR GLY PHE ILE GLU ASP SEQRES 5 B 167 THR LEU GLY GLU ASP GLY ASP PRO LEU ASP ALA LEU VAL SEQRES 6 B 167 LEU LEU PRO GLU PRO LEU PHE PRO GLY VAL LEU VAL GLU SEQRES 7 B 167 ALA ARG PRO VAL GLY MET PHE ARG MET VAL ASP GLU HIS SEQRES 8 B 167 GLY GLY ASP ASP LYS VAL LEU CYS VAL PRO VAL ASN ASP SEQRES 9 B 167 HIS ARG TRP ASP HIS ILE HIS GLY ILE ILE ASP VAL PRO SEQRES 10 B 167 THR PHE GLU LEU ASP ALA ILE LYS HIS PHE PHE VAL HIS SEQRES 11 B 167 TYR LYS ASP LEU GLU PRO GLY LYS PHE VAL LYS ALA ALA SEQRES 12 B 167 ASP TRP VAL GLY ARG ASP GLU ALA GLU ALA GLU VAL GLN SEQRES 13 B 167 ARG SER VAL GLU ARG PHE LYS ALA GLY GLY HIS HET EDO A 201 4 HET EDO A 202 4 HET EDO B 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *173(H2 O) HELIX 1 1 ASP A 99 ASP A 103 5 5 HELIX 2 2 GLY A 107 VAL A 111 5 5 HELIX 3 3 PRO A 112 TYR A 126 1 15 HELIX 4 4 ARG A 143 ALA A 159 1 17 HELIX 5 5 ASP B 99 ASP B 103 5 5 HELIX 6 6 GLY B 107 VAL B 111 5 5 HELIX 7 7 PRO B 112 TYR B 126 1 15 HELIX 8 8 ARG B 143 GLY B 160 1 18 SHEET 1 A 7 VAL A 135 GLY A 142 0 SHEET 2 A 7 LEU A 71 ASP A 84 -1 N ARG A 81 O ASP A 139 SHEET 3 A 7 GLY A 87 PRO A 96 -1 O LEU A 93 N VAL A 77 SHEET 4 A 7 ASP A 57 VAL A 60 1 N LEU A 59 O VAL A 92 SHEET 5 A 7 ASP A 41 ILE A 45 -1 N GLY A 43 O ALA A 58 SHEET 6 A 7 PHE A 3 ILE A 9 -1 N GLU A 8 O TYR A 42 SHEET 7 A 7 LEU A 71 ASP A 84 -1 O ALA A 74 N PHE A 3 SHEET 1 B 2 ASN A 15 VAL A 19 0 SHEET 2 B 2 VAL A 26 TYR A 31 -1 O ARG A 30 N LYS A 16 SHEET 1 C 7 VAL B 135 GLY B 142 0 SHEET 2 C 7 LEU B 71 ASP B 84 -1 N ARG B 81 O ASP B 139 SHEET 3 C 7 GLY B 87 PRO B 96 -1 O GLY B 87 N ASP B 84 SHEET 4 C 7 ASP B 57 VAL B 60 1 N LEU B 59 O VAL B 92 SHEET 5 C 7 ASP B 41 ILE B 45 -1 N GLY B 43 O ALA B 58 SHEET 6 C 7 PHE B 3 ILE B 9 -1 N GLU B 8 O TYR B 42 SHEET 7 C 7 LEU B 71 ASP B 84 -1 O ALA B 74 N PHE B 3 SHEET 1 D 2 ASN B 15 VAL B 19 0 SHEET 2 D 2 VAL B 26 TYR B 31 -1 O ASP B 29 N LYS B 16 SITE 1 AC1 5 ASP A 52 ASP A 57 ASP A 89 HOH A 306 SITE 2 AC1 5 HOH A 307 SITE 1 AC2 6 GLY A 107 ILE A 108 ILE A 109 GLY A 142 SITE 2 AC2 6 ARG A 143 HOH A 378 SITE 1 AC3 6 ASP B 52 ASP B 57 ASP B 89 HOH B 319 SITE 2 AC3 6 HOH B 349 HOH B 364 CRYST1 121.180 121.180 66.340 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008252 0.004764 0.000000 0.00000 SCALE2 0.000000 0.009529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015074 0.00000