HEADER ISOMERASE 28-MAR-12 4EF0 TITLE CRYSTAL STRUCTURE OF THE FIRST CATALYTIC DOMAIN OF PROTEIN DISULFIDE TITLE 2 ISOMERASE P5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 27-140; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM PROTEIN 5, ER PROTEIN 5, ERP5, PROTEIN COMPND 6 DISULFIDE ISOMERASE P5, THIOREDOXIN DOMAIN-CONTAINING PROTEIN 7; COMPND 7 EC: 5.3.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDIA6, ERP5, P5, TXNDC7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS THIOREDOXIN-LIKE FOLD, DISULFIDE BOND ISOMERIZATION, BIP, ENDOPLASMIC KEYWDS 2 RETICULUM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.VINAIK,G.KOZLOV,K.GEHRING REVDAT 2 13-SEP-23 4EF0 1 SEQADV REVDAT 1 03-APR-13 4EF0 0 JRNL AUTH R.VINAIK,G.KOZLOV,K.GEHRING JRNL TITL CRYSTAL STRUCTURE OF THE FIRST CATALYTIC DOMAIN OF PROTEIN JRNL TITL 2 DISULFIDE ISOMERASE P5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 42790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2566 ; 0.936 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 5.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;30.722 ;23.908 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;12.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1451 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 838 ; 0.170 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1259 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 262 ; 0.070 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.101 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 0.387 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1880 ; 0.655 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 783 ; 1.122 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 676 ; 1.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3255 4.3165 -15.1574 REMARK 3 T TENSOR REMARK 3 T11: -0.0339 T22: 0.0194 REMARK 3 T33: 0.0862 T12: -0.0129 REMARK 3 T13: 0.0545 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 3.6122 L22: 4.2258 REMARK 3 L33: 5.3235 L12: -0.5894 REMARK 3 L13: 1.7822 L23: 1.2397 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.3369 S13: -0.2283 REMARK 3 S21: -0.1522 S22: 0.2889 S23: -0.4671 REMARK 3 S31: -0.0214 S32: 0.5635 S33: -0.2571 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0626 8.6010 -14.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0341 REMARK 3 T33: 0.0393 T12: -0.0128 REMARK 3 T13: 0.0078 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.7980 L22: 2.4335 REMARK 3 L33: 1.2809 L12: 0.4376 REMARK 3 L13: 0.2673 L23: 0.6781 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.0614 S13: -0.0614 REMARK 3 S21: -0.1579 S22: 0.0564 S23: 0.0301 REMARK 3 S31: -0.0195 S32: 0.0329 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5708 -6.4149 -15.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: -0.0478 REMARK 3 T33: 0.1166 T12: 0.0088 REMARK 3 T13: 0.0480 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.2733 L22: 2.3467 REMARK 3 L33: 3.5709 L12: 0.4819 REMARK 3 L13: 1.7489 L23: 2.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: 0.0617 S13: -0.4490 REMARK 3 S21: 0.5317 S22: 0.1297 S23: 0.1656 REMARK 3 S31: 0.2229 S32: 0.2046 S33: -0.2876 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9759 0.5990 -6.2147 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0084 REMARK 3 T33: 0.0583 T12: -0.0030 REMARK 3 T13: -0.0090 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 7.1668 L22: 1.3652 REMARK 3 L33: 5.3141 L12: 1.5997 REMARK 3 L13: 5.5458 L23: 1.1904 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: -0.3261 S13: -0.3952 REMARK 3 S21: 0.2121 S22: -0.0309 S23: -0.2387 REMARK 3 S31: 0.2818 S32: -0.1273 S33: -0.1343 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6920 10.8413 -4.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0388 REMARK 3 T33: 0.0242 T12: -0.0125 REMARK 3 T13: 0.0256 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.7641 L22: 1.2605 REMARK 3 L33: 1.0144 L12: 0.3814 REMARK 3 L13: 0.8688 L23: 0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0097 S13: -0.1064 REMARK 3 S21: 0.1188 S22: 0.0109 S23: 0.0171 REMARK 3 S31: 0.0000 S32: -0.0560 S33: 0.0138 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4070 10.2342 6.5632 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0423 REMARK 3 T33: -0.0249 T12: 0.0043 REMARK 3 T13: -0.0763 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 32.9290 L22: 5.9561 REMARK 3 L33: 7.2195 L12: -5.2430 REMARK 3 L13: 3.9533 L23: 1.4821 REMARK 3 S TENSOR REMARK 3 S11: -0.2894 S12: -1.9196 S13: -0.4911 REMARK 3 S21: 0.6280 S22: 0.4448 S23: -0.1243 REMARK 3 S31: 0.3198 S32: -0.6649 S33: -0.1553 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2364 28.0068 -0.1448 REMARK 3 T TENSOR REMARK 3 T11: 0.0167 T22: 0.0396 REMARK 3 T33: 0.0361 T12: -0.0137 REMARK 3 T13: -0.0162 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.0847 L22: 0.6740 REMARK 3 L33: 2.4316 L12: 0.5125 REMARK 3 L13: 0.6998 L23: 0.6937 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0259 S13: -0.0779 REMARK 3 S21: -0.0155 S22: 0.0699 S23: -0.1404 REMARK 3 S31: 0.0683 S32: 0.1639 S33: -0.0919 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4033 20.5978 10.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: -0.0003 REMARK 3 T33: 0.0105 T12: -0.0068 REMARK 3 T13: -0.0848 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 7.7601 L22: 8.3090 REMARK 3 L33: 7.1637 L12: 3.5814 REMARK 3 L13: 4.3019 L23: 3.8435 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.2472 S13: -0.1917 REMARK 3 S21: 0.5665 S22: -0.0874 S23: -0.4147 REMARK 3 S31: 0.1157 S32: 0.0403 S33: -0.0383 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8334 28.8819 0.7671 REMARK 3 T TENSOR REMARK 3 T11: 0.0316 T22: 0.0490 REMARK 3 T33: 0.0233 T12: -0.0260 REMARK 3 T13: -0.0161 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.5621 L22: 2.4231 REMARK 3 L33: 1.4871 L12: 1.1837 REMARK 3 L13: -0.1082 L23: 0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: 0.0568 S13: 0.0171 REMARK 3 S21: 0.0221 S22: -0.0065 S23: -0.0841 REMARK 3 S31: -0.1652 S32: 0.1860 S33: -0.0573 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0292 33.2891 2.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0296 REMARK 3 T33: 0.0265 T12: -0.0006 REMARK 3 T13: -0.0148 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.5699 L22: 1.7610 REMARK 3 L33: 5.6522 L12: 0.1680 REMARK 3 L13: 2.1074 L23: 0.9986 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.1807 S13: 0.2090 REMARK 3 S21: 0.0125 S22: -0.0845 S23: 0.0607 REMARK 3 S31: -0.2198 S32: -0.2552 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5370 23.0405 6.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0519 REMARK 3 T33: -0.0185 T12: -0.0149 REMARK 3 T13: 0.0108 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 5.7247 L22: 2.3727 REMARK 3 L33: 6.3655 L12: -0.4421 REMARK 3 L13: 4.5690 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: -0.3100 S13: -0.0515 REMARK 3 S21: 0.1695 S22: 0.1329 S23: -0.1072 REMARK 3 S31: -0.1597 S32: 0.0945 S33: -0.0260 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 136 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): -32.5073 25.0211 -6.7724 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0040 REMARK 3 T33: 0.0029 T12: 0.0063 REMARK 3 T13: 0.0078 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 13.7095 L22: 6.3549 REMARK 3 L33: 4.3729 L12: 3.6960 REMARK 3 L13: 3.0136 L23: -0.3481 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: -0.2569 S13: 0.5613 REMARK 3 S21: 0.2065 S22: -0.0874 S23: 0.3975 REMARK 3 S31: -0.4037 S32: -0.3445 S33: 0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03400 REMARK 200 FOR THE DATA SET : 34.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F8U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SUCCINIC ACID, 15%(W/V) PEG REMARK 280 3350, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.92600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.48504 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.07533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.92600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.48504 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.07533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.92600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.48504 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.07533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.97009 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 30.15067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.97009 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.15067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.97009 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 30.15067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 141 REMARK 465 GLU A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 LEU B 141 REMARK 465 GLU B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 26 SD CE REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 MET B 26 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 -51.45 -122.78 REMARK 500 ARG A 118 34.86 -97.28 REMARK 500 VAL B 75 -52.95 -120.15 REMARK 500 ARG B 118 42.12 -97.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 4EF0 A 27 140 UNP Q15084 PDIA6_HUMAN 27 140 DBREF 4EF0 B 27 140 UNP Q15084 PDIA6_HUMAN 27 140 SEQADV 4EF0 MET A 26 UNP Q15084 INITIATING METHIONINE SEQADV 4EF0 LEU A 141 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 GLU A 142 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 143 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 144 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 145 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 146 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 147 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS A 148 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 MET B 26 UNP Q15084 INITIATING METHIONINE SEQADV 4EF0 LEU B 141 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 GLU B 142 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 143 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 144 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 145 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 146 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 147 UNP Q15084 EXPRESSION TAG SEQADV 4EF0 HIS B 148 UNP Q15084 EXPRESSION TAG SEQRES 1 A 123 MET VAL ILE GLU LEU THR PRO SER ASN PHE ASN ARG GLU SEQRES 2 A 123 VAL ILE GLN SER ASP SER LEU TRP LEU VAL GLU PHE TYR SEQRES 3 A 123 ALA PRO TRP CYS GLY HIS CYS GLN ARG LEU THR PRO GLU SEQRES 4 A 123 TRP LYS LYS ALA ALA THR ALA LEU LYS ASP VAL VAL LYS SEQRES 5 A 123 VAL GLY ALA VAL ASP ALA ASP LYS HIS HIS SER LEU GLY SEQRES 6 A 123 GLY GLN TYR GLY VAL GLN GLY PHE PRO THR ILE LYS ILE SEQRES 7 A 123 PHE GLY SER ASN LYS ASN ARG PRO GLU ASP TYR GLN GLY SEQRES 8 A 123 GLY ARG THR GLY GLU ALA ILE VAL ASP ALA ALA LEU SER SEQRES 9 A 123 ALA LEU ARG GLN LEU VAL LYS ASP ARG LEU GLY LEU GLU SEQRES 10 A 123 HIS HIS HIS HIS HIS HIS SEQRES 1 B 123 MET VAL ILE GLU LEU THR PRO SER ASN PHE ASN ARG GLU SEQRES 2 B 123 VAL ILE GLN SER ASP SER LEU TRP LEU VAL GLU PHE TYR SEQRES 3 B 123 ALA PRO TRP CYS GLY HIS CYS GLN ARG LEU THR PRO GLU SEQRES 4 B 123 TRP LYS LYS ALA ALA THR ALA LEU LYS ASP VAL VAL LYS SEQRES 5 B 123 VAL GLY ALA VAL ASP ALA ASP LYS HIS HIS SER LEU GLY SEQRES 6 B 123 GLY GLN TYR GLY VAL GLN GLY PHE PRO THR ILE LYS ILE SEQRES 7 B 123 PHE GLY SER ASN LYS ASN ARG PRO GLU ASP TYR GLN GLY SEQRES 8 B 123 GLY ARG THR GLY GLU ALA ILE VAL ASP ALA ALA LEU SER SEQRES 9 B 123 ALA LEU ARG GLN LEU VAL LYS ASP ARG LEU GLY LEU GLU SEQRES 10 B 123 HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *351(H2 O) HELIX 1 1 ASN A 34 VAL A 39 1 6 HELIX 2 2 CYS A 55 LEU A 72 1 18 HELIX 3 3 HIS A 86 TYR A 93 1 8 HELIX 4 4 THR A 119 GLY A 140 1 22 HELIX 5 5 ASN B 34 VAL B 39 1 6 HELIX 6 6 CYS B 55 LEU B 72 1 18 HELIX 7 7 HIS B 86 TYR B 93 1 8 HELIX 8 8 THR B 119 GLY B 140 1 22 SHEET 1 A 5 ILE A 28 LEU A 30 0 SHEET 2 A 5 LYS A 77 ASP A 82 1 O ALA A 80 N LEU A 30 SHEET 3 A 5 TRP A 46 TYR A 51 1 N LEU A 47 O GLY A 79 SHEET 4 A 5 THR A 100 PHE A 104 -1 O THR A 100 N PHE A 50 SHEET 5 A 5 GLU A 112 ASP A 113 -1 O GLU A 112 N ILE A 103 SHEET 1 B 5 ILE B 28 LEU B 30 0 SHEET 2 B 5 LYS B 77 ASP B 82 1 O ALA B 80 N LEU B 30 SHEET 3 B 5 TRP B 46 TYR B 51 1 N LEU B 47 O GLY B 79 SHEET 4 B 5 THR B 100 PHE B 104 -1 O THR B 100 N PHE B 50 SHEET 5 B 5 GLU B 112 TYR B 114 -1 O GLU B 112 N ILE B 103 CISPEP 1 PHE A 98 PRO A 99 0 -7.23 CISPEP 2 PHE B 98 PRO B 99 0 -9.23 CRYST1 129.852 129.852 45.226 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007701 0.004446 0.000000 0.00000 SCALE2 0.000000 0.008892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022111 0.00000