HEADER METHIONINE-BINDING PROTEIN 28-MAR-12 4EF2 TITLE CRYSTAL STRUCTURE OF A PHEROMONE COB1 PRECURSOR/LIPOPROTEIN, YAEC TITLE 2 FAMILY (EF2496) FROM ENTEROCOCCUS FAECALIS V583 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE COB1/LIPOPROTEIN, YAEC FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 GENE: EF_2496; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PERIPLASMIC METHIONINE BINDING PROTEIN, NLPA LIPOPROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, METHIONINE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-NOV-24 4EF2 1 REMARK REVDAT 4 01-FEB-23 4EF2 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4EF2 1 JRNL REVDAT 2 15-NOV-17 4EF2 1 REMARK REVDAT 1 25-APR-12 4EF2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PHEROMONE COB1 PRECURSOR/LIPOPROTEIN, JRNL TITL 2 YAEC FAMILY (EF2496) FROM ENTEROCOCCUS FAECALIS V583 AT 2.10 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 28794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.82000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 4.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.455 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3911 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2556 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5319 ; 1.858 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6330 ; 1.465 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;39.808 ;26.322 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;12.346 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4315 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 693 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 861 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2331 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1863 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1610 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 14 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7178 10.2518 31.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.0813 REMARK 3 T33: 0.0193 T12: 0.0334 REMARK 3 T13: 0.0008 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.7455 L22: 3.9108 REMARK 3 L33: 0.9602 L12: 1.9690 REMARK 3 L13: 0.3546 L23: 0.1895 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.1070 S13: -0.0231 REMARK 3 S21: -0.1610 S22: 0.1149 S23: 0.1501 REMARK 3 S31: 0.0073 S32: -0.0961 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1908 37.8049 6.9745 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.3254 REMARK 3 T33: 0.0965 T12: -0.0115 REMARK 3 T13: -0.0423 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.6085 L22: 3.9902 REMARK 3 L33: 1.9495 L12: 0.9029 REMARK 3 L13: -0.2991 L23: -1.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.0327 S13: -0.3265 REMARK 3 S21: -0.0505 S22: 0.0540 S23: 0.2357 REMARK 3 S31: 0.1577 S32: -0.2892 S33: -0.1124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 3 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.PEG FRAGMENTS (PEG, PGE AND PE8) FROM THE CRYSTALLIZATION REMARK 3 SOLUTION AND CHLORIDE (CL) FROM THE PURIFICATION BUFFER HAVE REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 3 6.SELENO-METHIONINE (MSE) HAS BEEN MODELED AT THE PUTATIVE REMARK 3 ACTIVE SITE BASED ON PUTATIVE ASSIGNMENT OF FUNCTION FROM REMARK 3 PROTEIN STRUCTURE COMPARISONS AND ANOMALOUS DIFFERENCE REMARK 3 FOURIER ELECTRON DENSITY MAPS. REMARK 3 7.RAMACHANDRAN OUTLIERS AT PHE84 IN BOTH PROTEIN ARE REMARK 3 SUPPORTED BY ELECTRON DENSITY AND LIE IN THE VICINITY OF THE REMARK 3 PUTATIVE ACTIVE SITE. REMARK 3 8.NCS RESTRAINTS WERE APPLIED USING REFMAC'S LOCAL NCS OPTION REMARK 3 (NCSR LOCAL). REMARK 3 NCS GROUP 1 CHAIN A (30-270 TO CHAIN B (30-270) COUNT: 8183, RMS: REMARK 3 0.12, WEIGHT: 0.05. REMARK 4 REMARK 4 4EF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97966,0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0% POLYETHYLENE GLYCOL 400, 0.1M REMARK 280 CHES PH 9.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.11250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.90750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.84550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.90750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.11250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.84550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 271 REMARK 465 GLU A 272 REMARK 465 GLY B 0 REMARK 465 ASP B 28 REMARK 465 ASP B 29 REMARK 465 ASN B 271 REMARK 465 GLU B 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 214 CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 244 CD CE NZ REMARK 470 LYS A 248 CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 SER B 30 OG REMARK 470 VAL B 31 CG1 CG2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 LYS B 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 47 CG HIS A 47 CD2 0.058 REMARK 500 TRP A 263 CE2 TRP A 263 CD2 0.087 REMARK 500 HIS B 47 CG HIS B 47 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 98 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS B 222 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 -25.81 -168.59 REMARK 500 ASP A 170 -79.15 -95.72 REMARK 500 PHE B 84 -22.53 -166.60 REMARK 500 ASP B 170 -80.56 -93.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE8 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420196 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 28-272) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4EF2 A 28 272 UNP Q831K8 Q831K8_ENTFA 28 272 DBREF 4EF2 B 28 272 UNP Q831K8 Q831K8_ENTFA 28 272 SEQADV 4EF2 GLY A 0 UNP Q831K8 EXPRESSION TAG SEQADV 4EF2 GLY B 0 UNP Q831K8 EXPRESSION TAG SEQRES 1 A 246 GLY ASP ASP SER VAL LEU LYS VAL GLY ALA SER PRO VAL SEQRES 2 A 246 PRO HIS ALA GLU ILE LEU GLU HIS VAL LYS PRO LEU LEU SEQRES 3 A 246 GLU LYS GLU GLY VAL LYS LEU GLU VAL THR THR TYR THR SEQRES 4 A 246 ASP TYR VAL LEU PRO ASN LYS ALA LEU GLU SER GLY ASP SEQRES 5 A 246 ILE ASP ALA ASN TYR PHE GLN HIS VAL PRO PHE PHE ASN SEQRES 6 A 246 GLU ALA VAL LYS GLU ASN ASP TYR ASP PHE VAL ASN ALA SEQRES 7 A 246 GLY ALA ILE HIS LEU GLU PRO VAL GLY LEU TYR SER LYS SEQRES 8 A 246 LYS TYR LYS SER LEU GLN GLU ILE PRO ASP GLY SER THR SEQRES 9 A 246 ILE TYR VAL SER SER SER VAL SER ASP TRP PRO ARG VAL SEQRES 10 A 246 LEU THR ILE LEU GLU ASP ALA GLY LEU ILE THR LEU LYS SEQRES 11 A 246 GLU GLY VAL ASP ARG THR THR ALA THR PHE ASP ASP ILE SEQRES 12 A 246 ASP LYS ASN THR LYS LYS LEU LYS PHE ASN HIS GLU SER SEQRES 13 A 246 ASP PRO ALA ILE MSE THR THR LEU TYR ASP ASN GLU GLU SEQRES 14 A 246 GLY ALA ALA VAL LEU ILE ASN SER ASN PHE ALA VAL ASP SEQRES 15 A 246 GLN GLY LEU ASN PRO LYS LYS ASP ALA ILE ALA LEU GLU SEQRES 16 A 246 LYS GLU SER SER PRO TYR ALA ASN ILE ILE ALA VAL ARG SEQRES 17 A 246 LYS GLU ASP GLU ASN ASN GLU ASN VAL LYS LYS LEU VAL SEQRES 18 A 246 LYS VAL LEU ARG SER LYS GLU VAL GLN ASP TRP ILE THR SEQRES 19 A 246 LYS LYS TRP ASN GLY ALA ILE VAL PRO VAL ASN GLU SEQRES 1 B 246 GLY ASP ASP SER VAL LEU LYS VAL GLY ALA SER PRO VAL SEQRES 2 B 246 PRO HIS ALA GLU ILE LEU GLU HIS VAL LYS PRO LEU LEU SEQRES 3 B 246 GLU LYS GLU GLY VAL LYS LEU GLU VAL THR THR TYR THR SEQRES 4 B 246 ASP TYR VAL LEU PRO ASN LYS ALA LEU GLU SER GLY ASP SEQRES 5 B 246 ILE ASP ALA ASN TYR PHE GLN HIS VAL PRO PHE PHE ASN SEQRES 6 B 246 GLU ALA VAL LYS GLU ASN ASP TYR ASP PHE VAL ASN ALA SEQRES 7 B 246 GLY ALA ILE HIS LEU GLU PRO VAL GLY LEU TYR SER LYS SEQRES 8 B 246 LYS TYR LYS SER LEU GLN GLU ILE PRO ASP GLY SER THR SEQRES 9 B 246 ILE TYR VAL SER SER SER VAL SER ASP TRP PRO ARG VAL SEQRES 10 B 246 LEU THR ILE LEU GLU ASP ALA GLY LEU ILE THR LEU LYS SEQRES 11 B 246 GLU GLY VAL ASP ARG THR THR ALA THR PHE ASP ASP ILE SEQRES 12 B 246 ASP LYS ASN THR LYS LYS LEU LYS PHE ASN HIS GLU SER SEQRES 13 B 246 ASP PRO ALA ILE MSE THR THR LEU TYR ASP ASN GLU GLU SEQRES 14 B 246 GLY ALA ALA VAL LEU ILE ASN SER ASN PHE ALA VAL ASP SEQRES 15 B 246 GLN GLY LEU ASN PRO LYS LYS ASP ALA ILE ALA LEU GLU SEQRES 16 B 246 LYS GLU SER SER PRO TYR ALA ASN ILE ILE ALA VAL ARG SEQRES 17 B 246 LYS GLU ASP GLU ASN ASN GLU ASN VAL LYS LYS LEU VAL SEQRES 18 B 246 LYS VAL LEU ARG SER LYS GLU VAL GLN ASP TRP ILE THR SEQRES 19 B 246 LYS LYS TRP ASN GLY ALA ILE VAL PRO VAL ASN GLU MODRES 4EF2 MSE A 187 MET SELENOMETHIONINE MODRES 4EF2 MSE B 187 MET SELENOMETHIONINE HET MSE A 187 8 HET MSE B 187 8 HET MSE A 301 9 HET CL A 302 1 HET PGE A 303 10 HET PEG A 304 7 HET MSE B 301 9 HET PEG B 302 7 HET PE8 B 303 25 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 CL CL 1- FORMUL 5 PGE C6 H14 O4 FORMUL 6 PEG 2(C4 H10 O3) FORMUL 9 PE8 C16 H34 O9 FORMUL 10 HOH *98(H2 O) HELIX 1 1 PRO A 40 GLU A 55 1 16 HELIX 2 2 VAL A 68 SER A 76 1 9 HELIX 3 3 VAL A 87 ASP A 98 1 12 HELIX 4 4 SER A 121 ILE A 125 5 5 HELIX 5 5 SER A 136 SER A 138 5 3 HELIX 6 6 ASP A 139 ALA A 150 1 12 HELIX 7 7 ASP A 160 ALA A 164 5 5 HELIX 8 8 THR A 165 ASP A 167 5 3 HELIX 9 9 ASP A 183 ALA A 185 5 3 HELIX 10 10 ILE A 186 ASN A 193 1 8 HELIX 11 11 ASN A 202 GLN A 209 1 8 HELIX 12 12 ASN A 212 ALA A 217 1 6 HELIX 13 13 SER A 224 TYR A 227 5 4 HELIX 14 14 GLU A 236 GLU A 238 5 3 HELIX 15 15 ASN A 240 SER A 252 1 13 HELIX 16 16 SER A 252 TRP A 263 1 12 HELIX 17 17 PRO B 40 GLU B 55 1 16 HELIX 18 18 VAL B 68 SER B 76 1 9 HELIX 19 19 VAL B 87 ASP B 98 1 12 HELIX 20 20 SER B 121 ILE B 125 5 5 HELIX 21 21 SER B 136 SER B 138 5 3 HELIX 22 22 ASP B 139 ALA B 150 1 12 HELIX 23 23 THR B 165 ASP B 167 5 3 HELIX 24 24 ASP B 183 ALA B 185 5 3 HELIX 25 25 ILE B 186 ASN B 193 1 8 HELIX 26 26 ASN B 202 GLN B 209 1 8 HELIX 27 27 ASN B 212 ALA B 217 1 6 HELIX 28 28 SER B 224 PRO B 226 5 3 HELIX 29 29 GLU B 236 GLU B 238 5 3 HELIX 30 30 ASN B 240 SER B 252 1 13 HELIX 31 31 SER B 252 TRP B 263 1 12 SHEET 1 A 6 LYS A 58 THR A 63 0 SHEET 2 A 6 VAL A 31 ALA A 36 1 N LEU A 32 O LYS A 58 SHEET 3 A 6 ALA A 81 HIS A 86 1 O ALA A 81 N GLY A 35 SHEET 4 A 6 ASN A 229 ARG A 234 -1 O ILE A 230 N GLN A 85 SHEET 5 A 6 PHE A 101 LEU A 109 -1 N HIS A 108 O ASN A 229 SHEET 6 A 6 VAL A 268 PRO A 269 -1 O VAL A 268 N LEU A 109 SHEET 1 B 5 LYS A 177 SER A 182 0 SHEET 2 B 5 THR A 130 SER A 134 1 N VAL A 133 O ASN A 179 SHEET 3 B 5 ALA A 198 ILE A 201 1 O ALA A 198 N TYR A 132 SHEET 4 B 5 GLY A 113 TYR A 115 -1 N TYR A 115 O VAL A 199 SHEET 5 B 5 ALA A 219 LEU A 220 -1 O ALA A 219 N LEU A 114 SHEET 1 C 2 ILE A 153 LEU A 155 0 SHEET 2 C 2 ILE A 169 ASN A 172 -1 O ASP A 170 N THR A 154 SHEET 1 D 6 LYS B 58 THR B 63 0 SHEET 2 D 6 VAL B 31 ALA B 36 1 N VAL B 34 O THR B 62 SHEET 3 D 6 ALA B 81 HIS B 86 1 O TYR B 83 N GLY B 35 SHEET 4 D 6 ALA B 228 ARG B 234 -1 O ILE B 230 N GLN B 85 SHEET 5 D 6 PHE B 101 LEU B 109 -1 N HIS B 108 O ASN B 229 SHEET 6 D 6 VAL B 268 PRO B 269 -1 O VAL B 268 N LEU B 109 SHEET 1 E 5 LYS B 177 SER B 182 0 SHEET 2 E 5 THR B 130 SER B 134 1 N VAL B 133 O ASN B 179 SHEET 3 E 5 ALA B 198 ILE B 201 1 O LEU B 200 N TYR B 132 SHEET 4 E 5 GLY B 113 TYR B 115 -1 N TYR B 115 O VAL B 199 SHEET 5 E 5 ALA B 219 LEU B 220 -1 O ALA B 219 N LEU B 114 SHEET 1 F 2 ILE B 153 LEU B 155 0 SHEET 2 F 2 ILE B 169 ASN B 172 -1 O ASP B 170 N THR B 154 LINK C ILE A 186 N MSE A 187 1555 1555 1.34 LINK C MSE A 187 N THR A 188 1555 1555 1.33 LINK C ILE B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N THR B 188 1555 1555 1.34 CISPEP 1 VAL A 39 PRO A 40 0 -4.59 CISPEP 2 VAL B 39 PRO B 40 0 -2.24 CISPEP 3 VAL B 39 PRO B 40 0 -0.37 SITE 1 AC1 3 ALA A 106 ARG A 251 PGE A 303 SITE 1 AC2 2 ASN A 103 CL A 302 SITE 1 AC3 4 TYR A 132 LYS A 248 ARG A 251 SER A 252 SITE 1 AC4 5 SER B 116 LYS B 117 TYR B 119 LYS B 120 SITE 2 AC4 5 ASP B 216 SITE 1 AC5 8 THR A 145 ARG A 161 GLU A 223 PRO A 226 SITE 2 AC5 8 TYR A 227 GLU B 254 ASP B 257 LYS B 261 CRYST1 46.225 75.691 143.815 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006953 0.00000