HEADER HYDROLASE 30-MAR-12 4EGE TITLE CRYSTAL STRUCTURE OF DIPEPTIDASE PEPE FROM MYCOBACTERIUM ULCERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDASE PEPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS; SOURCE 3 ORGANISM_TAXID: 362242; SOURCE 4 STRAIN: AGY99; SOURCE 5 GENE: PEPE, MUL_2321; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4EGE 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 4EGE 1 JRNL REVDAT 1 25-APR-12 4EGE 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 22014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1380 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2705 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2791 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3810 ; 1.489 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;32.595 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;12.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2145 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6079 32.2564 -16.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.1660 REMARK 3 T33: 0.0496 T12: 0.0015 REMARK 3 T13: 0.0187 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 3.2929 L22: 1.2007 REMARK 3 L33: 3.3482 L12: -0.0201 REMARK 3 L13: 1.5505 L23: -0.4066 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0855 S13: -0.0515 REMARK 3 S21: -0.0846 S22: 0.1105 S23: 0.1267 REMARK 3 S31: 0.1256 S32: -0.2874 S33: -0.1242 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5302 24.3706 -15.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.1774 REMARK 3 T33: 0.1250 T12: -0.0312 REMARK 3 T13: 0.0127 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 2.6217 L22: 5.9857 REMARK 3 L33: 3.6334 L12: -0.9541 REMARK 3 L13: -0.3323 L23: -1.6670 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.4609 S13: -0.3719 REMARK 3 S21: -0.2323 S22: 0.1710 S23: 0.0516 REMARK 3 S31: 0.1330 S32: -0.3244 S33: -0.1521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6464 30.9970 -11.1061 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.0430 REMARK 3 T33: 0.0319 T12: 0.0029 REMARK 3 T13: 0.0048 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.7230 L22: 2.2718 REMARK 3 L33: 1.3926 L12: 0.3385 REMARK 3 L13: -0.1526 L23: -0.3890 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.1756 S13: -0.0163 REMARK 3 S21: -0.0498 S22: -0.0162 S23: -0.0893 REMARK 3 S31: -0.0152 S32: -0.0921 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6094 28.0128 -4.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0848 REMARK 3 T33: 0.0771 T12: 0.0397 REMARK 3 T13: -0.0218 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 3.3857 L22: 1.6696 REMARK 3 L33: 1.6386 L12: 0.9242 REMARK 3 L13: -0.7540 L23: -1.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.0380 S13: -0.2610 REMARK 3 S21: -0.1463 S22: -0.0017 S23: 0.0619 REMARK 3 S31: 0.1943 S32: 0.0214 S33: -0.0126 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5918 36.8816 5.2473 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.1450 REMARK 3 T33: 0.0362 T12: -0.0070 REMARK 3 T13: -0.0099 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.2635 L22: 1.4568 REMARK 3 L33: 1.4263 L12: 0.3575 REMARK 3 L13: -0.3393 L23: -0.4316 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: -0.3025 S13: 0.0285 REMARK 3 S21: 0.0806 S22: -0.1568 S23: 0.0585 REMARK 3 S31: -0.1218 S32: -0.0028 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5449 39.8487 -1.2075 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0909 REMARK 3 T33: 0.0384 T12: 0.0052 REMARK 3 T13: -0.0039 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.4962 L22: 1.2795 REMARK 3 L33: 1.0535 L12: 0.2767 REMARK 3 L13: -0.1605 L23: 0.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.1100 S13: 0.1104 REMARK 3 S21: 0.0224 S22: -0.0339 S23: 0.0053 REMARK 3 S31: -0.1205 S32: 0.0432 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4EGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973962 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22015 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WN1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.50, 200 REMARK 280 MM ZINC ACETATE, 10% (V/V) ISOPROPANOL, 40 MG/ML REMARK 280 MYULA.01407.A.A1 PS00805, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.12000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.21000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.56000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.21000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.68000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.21000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.56000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.68000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -425.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LEU A 360 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 335 UNK UNX A 420 1.89 REMARK 500 UNK UNX A 418 UNK UNX A 420 1.99 REMARK 500 ND1 HIS A 214 UNK UNX A 424 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 49 -83.97 -124.70 REMARK 500 ASP A 242 98.31 -170.94 REMARK 500 GLU A 335 57.42 -150.38 REMARK 500 ARG A 343 -71.52 -120.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE1 REMARK 620 2 HOH A 628 O 109.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 415 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 HOH A 629 O 129.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 416 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 NE2 REMARK 620 2 HOH A 637 O 89.7 REMARK 620 3 HOH A 638 O 96.2 126.3 REMARK 620 4 HOH A 648 O 97.3 127.1 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 412 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 230 OD1 REMARK 620 2 ASP A 230 OD2 54.9 REMARK 620 3 ASP A 242 OD1 93.4 146.6 REMARK 620 4 GLU A 349 OE1 99.2 98.2 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 HIS A 306 NE2 92.6 REMARK 620 3 GLU A 335 OE2 161.0 86.4 REMARK 620 4 GLU A 349 OE2 87.5 124.0 77.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYULA.01407.A RELATED DB: TARGETTRACK DBREF 4EGE A 1 374 UNP A0PQS3 A0PQS3_MYCUA 1 374 SEQADV 4EGE GLY A -3 UNP A0PQS3 EXPRESSION TAG SEQADV 4EGE PRO A -2 UNP A0PQS3 EXPRESSION TAG SEQADV 4EGE GLY A -1 UNP A0PQS3 EXPRESSION TAG SEQADV 4EGE SER A 0 UNP A0PQS3 EXPRESSION TAG SEQRES 1 A 378 GLY PRO GLY SER MET ASP SER GLY ARG PHE ASP THR ALA SEQRES 2 A 378 VAL TYR ALA ARG ARG LEU ALA ALA ALA ALA ALA ALA THR SEQRES 3 A 378 GLU GLN ALA GLY LEU ALA GLY LEU VAL ILE THR PRO GLY SEQRES 4 A 378 TYR ASP LEU ARG TYR LEU ILE GLY SER ARG ALA ASP THR SEQRES 5 A 378 PHE GLU ARG LEU THR ALA LEU VAL LEU PRO ALA SER GLY SEQRES 6 A 378 VAL PRO THR ILE VAL LEU PRO ARG LEU GLU LEU ALA SER SEQRES 7 A 378 LEU LYS GLU SER ALA ALA SER ASP LEU GLY VAL CYS VAL SEQRES 8 A 378 ARG ASP TRP VAL ASP GLY ASP ASP PRO TYR GLN LEU VAL SEQRES 9 A 378 ALA VAL ALA LEU GLY GLY ALA PRO ALA ALA THR ALA VAL SEQRES 10 A 378 THR ASP SER MET PRO ALA LEU HIS LEU LEU PRO LEU ALA SEQRES 11 A 378 ASP ALA LEU GLY VAL LEU PRO VAL LEU ALA THR ASP VAL SEQRES 12 A 378 LEU ARG GLN LEU ARG MET VAL LYS GLU ALA ALA GLU VAL SEQRES 13 A 378 ASP ALA LEU ALA LYS ALA GLY ALA ALA ILE ASP ARG VAL SEQRES 14 A 378 HIS ALA ARG VAL PRO ALA PHE LEU VAL PRO GLY ARG THR SEQRES 15 A 378 GLU ALA GLN VAL ALA ALA ASP ILE ALA GLU ALA ILE VAL SEQRES 16 A 378 ALA GLU GLY HIS SER ALA VAL ALA PHE VAL ILE VAL GLY SEQRES 17 A 378 SER GLY PRO HIS GLY ALA ASP PRO HIS HIS GLY TYR SER SEQRES 18 A 378 ASP ARG LYS LEU GLN VAL GLY ASP ILE VAL VAL VAL ASP SEQRES 19 A 378 ILE GLY GLY THR TYR GLU PRO GLY TYR TYR SER ASP SER SEQRES 20 A 378 THR ARG THR TYR SER ILE GLY ASP PRO SER PRO ASP VAL SEQRES 21 A 378 ALA GLN GLN TYR SER ALA LEU GLN ARG ALA GLN ARG ALA SEQRES 22 A 378 ALA VAL ASP ALA VAL ARG PRO GLY VAL THR ALA ALA GLN SEQRES 23 A 378 VAL ASP ALA ALA ALA ARG ASP VAL LEU ALA ASP ALA GLY SEQRES 24 A 378 LEU ALA GLU TYR PHE VAL HIS ARG THR GLY HIS GLY ILE SEQRES 25 A 378 GLY LEU CYS VAL HIS GLU GLU PRO TYR ILE VAL ALA GLY SEQRES 26 A 378 ASN GLU LEU PRO LEU VAL ALA GLY MET ALA PHE SER ILE SEQRES 27 A 378 GLU PRO GLY ILE TYR PHE PRO GLY ARG TRP GLY ALA ARG SEQRES 28 A 378 ILE GLU ASP ILE VAL VAL VAL THR GLU ASN GLY ALA LEU SEQRES 29 A 378 SER VAL ASN ASN ARG PRO HIS GLU LEU MET VAL VAL PRO SEQRES 30 A 378 VAL HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET ZN A 409 1 HET ZN A 410 1 HET ZN A 411 1 HET ZN A 412 1 HET ZN A 413 1 HET ZN A 414 1 HET ZN A 415 1 HET ZN A 416 1 HET ZN A 417 1 HET UNX A 418 1 HET UNX A 419 1 HET UNX A 420 1 HET UNX A 421 1 HET UNX A 422 1 HET UNX A 423 1 HET UNX A 424 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 ZN 9(ZN 2+) FORMUL 19 UNX 7(X) FORMUL 26 HOH *163(H2 O) HELIX 1 1 ASP A 7 ALA A 25 1 19 HELIX 2 2 GLY A 35 GLY A 43 1 9 HELIX 3 3 LEU A 70 GLU A 77 5 8 HELIX 4 4 ASP A 95 LEU A 104 1 10 HELIX 5 5 PRO A 118 GLY A 130 1 13 HELIX 6 6 ALA A 136 MET A 145 1 10 HELIX 7 7 GLU A 148 LEU A 173 1 26 HELIX 8 8 THR A 178 GLU A 193 1 16 HELIX 9 9 PRO A 207 ASP A 211 5 5 HELIX 10 10 SER A 253 VAL A 274 1 22 HELIX 11 11 THR A 279 ALA A 294 1 16 HELIX 12 12 LEU A 296 PHE A 300 5 5 SHEET 1 A 6 CYS A 86 TRP A 90 0 SHEET 2 A 6 THR A 64 PRO A 68 1 N ILE A 65 O CYS A 86 SHEET 3 A 6 ALA A 54 PRO A 58 -1 N VAL A 56 O THR A 64 SHEET 4 A 6 GLY A 29 ILE A 32 -1 N ILE A 32 O LEU A 55 SHEET 5 A 6 THR A 111 VAL A 113 1 O ALA A 112 N VAL A 31 SHEET 6 A 6 VAL A 134 LEU A 135 1 O VAL A 134 N VAL A 113 SHEET 1 B 3 ALA A 197 SER A 205 0 SHEET 2 B 3 ILE A 226 TYR A 235 -1 O VAL A 228 N GLY A 204 SHEET 3 B 3 TYR A 239 TYR A 240 -1 N TYR A 239 O TYR A 235 SHEET 1 C 4 ALA A 197 SER A 205 0 SHEET 2 C 4 ILE A 226 TYR A 235 -1 O VAL A 228 N GLY A 204 SHEET 3 C 4 SER A 243 ILE A 249 -1 O TYR A 247 N VAL A 227 SHEET 4 C 4 MET A 370 VAL A 372 1 O VAL A 372 N SER A 248 SHEET 1 D 2 GLY A 305 GLY A 307 0 SHEET 2 D 2 GLU A 314 ILE A 318 -1 O ILE A 318 N GLY A 305 SHEET 1 E 3 ALA A 331 ILE A 334 0 SHEET 2 E 3 ASP A 350 THR A 355 -1 O VAL A 352 N PHE A 332 SHEET 3 E 3 GLY A 358 SER A 361 -1 O GLY A 358 N THR A 355 SHEET 1 F 2 GLY A 337 PHE A 340 0 SHEET 2 F 2 TRP A 344 ARG A 347 -1 O TRP A 344 N PHE A 340 LINK OD2 ASP A 37 ZN ZN A 413 1555 1555 2.51 LINK OE1 GLU A 50 ZN ZN A 414 1555 1555 2.00 LINK OE1 GLU A 71 ZN ZN A 417 1555 1555 2.29 LINK SG CYS A 86 ZN ZN A 415 1555 1555 2.41 LINK NE2 HIS A 208 ZN ZN A 416 1555 1555 2.06 LINK OD1 ASP A 230 ZN ZN A 412 1555 1555 2.12 LINK OD2 ASP A 230 ZN ZN A 412 1555 1555 2.60 LINK OD2 ASP A 242 ZN ZN A 411 1555 1555 2.03 LINK OD1 ASP A 242 ZN ZN A 412 1555 1555 1.96 LINK NE2 HIS A 306 ZN ZN A 411 1555 1555 2.10 LINK OE2 GLU A 335 ZN ZN A 411 1555 1555 2.21 LINK OE2 GLU A 349 ZN ZN A 411 1555 1555 2.13 LINK OE1 GLU A 349 ZN ZN A 412 1555 1555 2.11 LINK ND1 HIS A 367 ZN ZN A 410 1555 1555 2.13 LINK OE1 GLU A 368 ZN ZN A 409 1555 1555 1.93 LINK ZN ZN A 414 O HOH A 628 1555 1555 1.98 LINK ZN ZN A 415 O HOH A 629 1555 1555 2.13 LINK ZN ZN A 416 O HOH A 637 1555 1555 2.67 LINK ZN ZN A 416 O HOH A 638 1555 1555 2.15 LINK ZN ZN A 416 O HOH A 648 1555 1555 2.38 CISPEP 1 ALA A 107 PRO A 108 0 -2.45 CISPEP 2 GLU A 236 PRO A 237 0 4.34 CISPEP 3 GLU A 315 PRO A 316 0 -2.75 SITE 1 AC1 4 GLU A 23 GLN A 24 GLN A 222 VAL A 223 SITE 1 AC2 2 GLN A 264 ARG A 265 SITE 1 AC3 2 ASP A 272 ASP A 289 SITE 1 AC4 5 TYR A 36 ARG A 144 CYS A 311 HIS A 313 SITE 2 AC4 5 ZN A 413 SITE 1 AC5 3 ALA A 149 VAL A 152 HOH A 655 SITE 1 AC6 3 GLY A 61 VAL A 62 VAL A 374 SITE 1 AC7 8 PRO A 34 ASP A 47 THR A 48 PHE A 49 SITE 2 AC7 8 PRO A 118 HIS A 121 HOH A 531 HOH A 547 SITE 1 AC8 3 ASP A 94 GLU A 368 ZN A 410 SITE 1 AC9 3 ARG A 268 HIS A 367 ZN A 409 SITE 1 BC1 5 ASP A 242 HIS A 306 GLU A 335 GLU A 349 SITE 2 BC1 5 ZN A 412 SITE 1 BC2 5 ASP A 230 ASP A 242 THR A 244 GLU A 349 SITE 2 BC2 5 ZN A 411 SITE 1 BC3 5 ASP A 37 ASP A 115 EDO A 405 HOH A 604 SITE 2 BC3 5 HOH A 663 SITE 1 BC4 4 GLU A 50 HIS A 313 HOH A 598 HOH A 628 SITE 1 BC5 3 CYS A 86 ASP A 251 HOH A 629 SITE 1 BC6 4 HIS A 208 HOH A 637 HOH A 638 HOH A 648 SITE 1 BC7 4 GLU A 71 HIS A 213 HOH A 606 HOH A 607 CRYST1 120.420 120.420 58.240 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017170 0.00000