HEADER TRANSFERASE 04-APR-12 4EHW TITLE CRYSTAL STRUCTURE OF LPXK FROM AQUIFEX AEOLICUS AT 2.3 ANGSTROM TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAACYLDISACCHARIDE 4'-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPID A 4'-KINASE; COMPND 5 EC: 2.7.1.130; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: AQ_1656, LPXK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET42B KEYWDS MEMBRANE PROTEIN, KINASE, LIPID A, P-LOOP, P-LOOP CONTAINING KEYWDS 2 NUCLEOSIDE TRIPHOSPHATE HYDROLASE, DISACCHARIDE-1-PHOSPHATE 4'- KEYWDS 3 KINASE, MEMBRANE, TRANSFERASE, LIPID METABOLISM, KEYWDS 4 TETRAACYLDISACCHARIDE 4'-KINASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.EMPTAGE,K.D.DAUGHTRY,C.W.PEMBLE IV,C.R.H.RAETZ REVDAT 2 28-FEB-24 4EHW 1 REMARK SEQADV REVDAT 1 29-AUG-12 4EHW 0 JRNL AUTH R.P.EMPTAGE,K.D.DAUGHTRY,C.W.PEMBLE,C.R.RAETZ JRNL TITL CRYSTAL STRUCTURE OF LPXK, THE 4'-KINASE OF LIPID A JRNL TITL 2 BIOSYNTHESIS AND ATYPICAL P-LOOP KINASE FUNCTIONING AT THE JRNL TITL 3 MEMBRANE INTERFACE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 12956 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22826246 JRNL DOI 10.1073/PNAS.1206072109 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 29334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8743 - 6.3161 0.99 1464 163 0.2201 0.2312 REMARK 3 2 6.3161 - 5.0253 0.99 1366 153 0.2262 0.2297 REMARK 3 3 5.0253 - 4.3936 0.98 1337 147 0.1572 0.1842 REMARK 3 4 4.3936 - 3.9935 0.96 1299 145 0.1779 0.2054 REMARK 3 5 3.9935 - 3.7081 0.98 1307 147 0.1986 0.2458 REMARK 3 6 3.7081 - 3.4901 0.98 1300 148 0.2079 0.2651 REMARK 3 7 3.4901 - 3.3156 0.96 1291 142 0.2286 0.2702 REMARK 3 8 3.3156 - 3.1716 0.94 1251 139 0.2203 0.3183 REMARK 3 9 3.1716 - 3.0497 0.93 1231 134 0.2594 0.3126 REMARK 3 10 3.0497 - 2.9446 0.92 1206 135 0.2639 0.3101 REMARK 3 11 2.9446 - 2.8526 0.90 1201 132 0.2910 0.3044 REMARK 3 12 2.8526 - 2.7712 0.91 1201 130 0.3054 0.4190 REMARK 3 13 2.7712 - 2.6983 0.92 1215 136 0.3326 0.3863 REMARK 3 14 2.6983 - 2.6326 0.94 1243 135 0.3515 0.3430 REMARK 3 15 2.6326 - 2.5728 0.93 1223 136 0.3797 0.4478 REMARK 3 16 2.5728 - 2.5181 0.93 1195 137 0.3719 0.4530 REMARK 3 17 2.5181 - 2.4677 0.94 1229 141 0.3618 0.3757 REMARK 3 18 2.4677 - 2.4212 0.94 1234 138 0.3360 0.3572 REMARK 3 19 2.4212 - 2.3780 0.93 1209 137 0.3543 0.4296 REMARK 3 20 2.3780 - 2.3377 0.94 1215 141 0.3463 0.3942 REMARK 3 21 2.3377 - 2.3000 0.90 1169 132 0.3526 0.3681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 80.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90150 REMARK 3 B22 (A**2) : 2.90150 REMARK 3 B33 (A**2) : -5.80300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2664 REMARK 3 ANGLE : 1.095 3566 REMARK 3 CHIRALITY : 0.075 382 REMARK 3 PLANARITY : 0.004 438 REMARK 3 DIHEDRAL : 17.001 1025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 8:81) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4622 83.2052 60.4667 REMARK 3 T TENSOR REMARK 3 T11: 0.4618 T22: 0.3794 REMARK 3 T33: 0.4302 T12: -0.0245 REMARK 3 T13: -0.0900 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.3661 L22: 0.4872 REMARK 3 L33: 1.7794 L12: -0.0069 REMARK 3 L13: 0.4332 L23: 0.8006 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.0030 S13: -0.5702 REMARK 3 S21: 0.1724 S22: -0.0282 S23: 0.0797 REMARK 3 S31: 0.5364 S32: -0.2740 S33: -0.0862 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 82:212) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5786 85.4376 60.7575 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.4356 REMARK 3 T33: 0.2534 T12: -0.0138 REMARK 3 T13: -0.0108 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.5273 L22: 1.7347 REMARK 3 L33: 1.3319 L12: 0.1754 REMARK 3 L13: 1.7090 L23: 0.1589 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.1654 S13: -0.0431 REMARK 3 S21: 0.2189 S22: -0.1870 S23: -0.0100 REMARK 3 S31: 0.2156 S32: -0.4543 S33: 0.0358 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 213:262) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1267 75.1959 55.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.8421 T22: 0.7481 REMARK 3 T33: 0.3717 T12: -0.1241 REMARK 3 T13: 0.1355 T23: 0.1108 REMARK 3 L TENSOR REMARK 3 L11: 3.4976 L22: 1.7570 REMARK 3 L33: 0.4658 L12: -0.0027 REMARK 3 L13: 0.1702 L23: 0.8723 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -1.3205 S13: 0.0208 REMARK 3 S21: 0.8985 S22: -0.4774 S23: 0.0034 REMARK 3 S31: 0.9216 S32: -0.0333 S33: -0.2699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 263:315) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8271 85.3064 55.2714 REMARK 3 T TENSOR REMARK 3 T11: 0.3743 T22: 0.5258 REMARK 3 T33: 0.2634 T12: -0.0416 REMARK 3 T13: 0.0508 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8501 L22: 1.5767 REMARK 3 L33: 0.9988 L12: 0.8785 REMARK 3 L13: 1.1719 L23: 0.7562 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.2164 S13: 0.2482 REMARK 3 S21: 0.4141 S22: -0.0809 S23: 0.2707 REMARK 3 S31: 0.1612 S32: -0.4991 S33: 0.0636 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.3L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.27 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.83 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIR SOLUTION CONTAINED 60% REMARK 280 MPD AND 0.1 M HEPES PH 7.5. THE DROP CONTAINED ~3-4 MG/ML REMARK 280 PROTEIN, 36% MPD, 60 MM HEPES PH 7.5, 10 MM HEPES PH 8.0, 0.3 M REMARK 280 NACL, 8% GLYCEROL, 0.8 MM DTT, AND ~0.1% DDM, SITTING DROP, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.95200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.59550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.59550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.97600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.59550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.59550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.92800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.59550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.59550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.97600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.59550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.59550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.92800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.95200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 63 -6.01 -55.73 REMARK 500 TYR A 74 -145.61 64.54 REMARK 500 CYS A 210 -170.71 177.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EHX RELATED DB: PDB REMARK 900 RELATED ID: 4EHY RELATED DB: PDB DBREF 4EHW A 1 315 UNP O67572 LPXK_AQUAE 1 315 SEQADV 4EHW SER A -1 UNP O67572 EXPRESSION TAG SEQADV 4EHW HIS A 0 UNP O67572 EXPRESSION TAG SEQRES 1 A 317 SER HIS MET LEU ARG SER SER LEU LEU PRO PHE SER TYR SEQRES 2 A 317 LEU TYR GLU LYS ILE ILE ASN PHE ARG ASN THR LEU TYR SEQRES 3 A 317 ASP LYS GLY PHE LEU LYS ILE LYS LYS LEU PRO VAL PRO SEQRES 4 A 317 VAL ILE SER VAL GLY ASN LEU SER VAL GLY GLY SER GLY SEQRES 5 A 317 LYS THR SER PHE VAL MET TYR LEU ALA ASP LEU LEU LYS SEQRES 6 A 317 ASP LYS ARG VAL CYS ILE LEU SER ARG GLY TYR LYS ARG SEQRES 7 A 317 LYS SER LYS GLY THR LEU ILE VAL SER GLU TYR GLY ASN SEQRES 8 A 317 LEU LYS VAL SER TRP GLU GLU ALA GLY ASP GLU PRO TYR SEQRES 9 A 317 LEU MET ALA LYS LEU LEU PRO HIS VAL SER VAL VAL ALA SEQRES 10 A 317 SER GLU ASP ARG TYR LYS GLY GLY LEU LEU ALA LEU GLU SEQRES 11 A 317 LYS LEU SER PRO GLU VAL PHE ILE LEU ASP ASP GLY PHE SEQRES 12 A 317 GLN HIS ARG LYS LEU HIS ARG ASP LEU ASN ILE LEU LEU SEQRES 13 A 317 LEU LYS LYS LYS ASP LEU LYS ASP ARG LEU LEU PRO ALA SEQRES 14 A 317 GLY ASN LEU ARG GLU PRO LEU LYS GLU ILE ARG ARG ALA SEQRES 15 A 317 ASP ALA LEU VAL LEU THR TYR GLN GLU VAL GLU PRO PHE SEQRES 16 A 317 GLU PHE PHE THR GLY LYS PRO THR PHE LYS MET PHE ARG SEQRES 17 A 317 GLU PHE CYS CYS LEU LEU ASN SER ASP PHE GLU GLU VAL SEQRES 18 A 317 PRO PHE ASP ILE LEU LYS GLU ARG GLU VAL ILE ALA PHE SEQRES 19 A 317 SER GLY LEU GLY ASP ASN GLY GLN PHE ARG LYS VAL LEU SEQRES 20 A 317 LYS ASN LEU GLY ILE LYS VAL LYS GLU PHE MET SER PHE SEQRES 21 A 317 PRO ASP HIS TYR ASP TYR SER ASP PHE THR PRO GLU GLU SEQRES 22 A 317 GLY GLU ILE TYR LEU THR THR PRO LYS ASP LEU ILE LYS SEQRES 23 A 317 LEU GLN GLY TYR GLU ASN VAL PHE ALA LEU ASN PHE LYS SEQRES 24 A 317 VAL LYS LEU GLU ARG GLU GLU LYS LEU LYS LYS LEU ILE SEQRES 25 A 317 TYR ARG ILE PHE TYR HET GOL A 400 6 HET GOL A 401 6 HET MPD A 402 8 HET MPD A 403 8 HET GOL A 404 6 HET MPD A 405 8 HET GOL A 406 6 HET GOL A 407 6 HET MPD A 408 8 HET GOL A 409 6 HETNAM GOL GLYCEROL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 6(C3 H8 O3) FORMUL 4 MPD 4(C6 H14 O2) FORMUL 12 HOH *89(H2 O) HELIX 1 1 PHE A 9 LYS A 26 1 18 HELIX 2 2 GLY A 50 LEU A 62 1 13 HELIX 3 3 SER A 93 GLY A 98 1 6 HELIX 4 4 GLY A 98 LEU A 108 1 11 HELIX 5 5 ASP A 118 SER A 131 1 14 HELIX 6 6 LYS A 157 LYS A 161 1 5 HELIX 7 7 PRO A 173 ALA A 180 5 8 HELIX 8 8 PRO A 220 LYS A 225 5 6 HELIX 9 9 GLY A 239 LEU A 248 1 10 HELIX 10 10 THR A 278 ILE A 283 1 6 HELIX 11 11 ARG A 302 ARG A 312 1 11 HELIX 12 12 ILE A 313 TYR A 315 5 3 SHEET 1 A10 ASN A 89 LEU A 90 0 SHEET 2 A10 LEU A 82 GLU A 86 -1 N GLU A 86 O ASN A 89 SHEET 3 A10 SER A 112 ALA A 115 -1 O ALA A 115 N LEU A 82 SHEET 4 A10 VAL A 67 SER A 71 1 N ILE A 69 O SER A 112 SHEET 5 A10 VAL A 134 LEU A 137 1 O ILE A 136 N LEU A 70 SHEET 6 A10 VAL A 38 ASN A 43 1 N ILE A 39 O LEU A 137 SHEET 7 A10 LEU A 150 LYS A 156 1 O LEU A 154 N GLY A 42 SHEET 8 A10 ALA A 182 THR A 186 1 O VAL A 184 N LEU A 155 SHEET 9 A10 THR A 201 LEU A 212 1 O PHE A 202 N LEU A 183 SHEET 10 A10 GLU A 218 VAL A 219 -1 O VAL A 219 N LEU A 211 SHEET 1 B13 ASN A 89 LEU A 90 0 SHEET 2 B13 LEU A 82 GLU A 86 -1 N GLU A 86 O ASN A 89 SHEET 3 B13 SER A 112 ALA A 115 -1 O ALA A 115 N LEU A 82 SHEET 4 B13 VAL A 67 SER A 71 1 N ILE A 69 O SER A 112 SHEET 5 B13 VAL A 134 LEU A 137 1 O ILE A 136 N LEU A 70 SHEET 6 B13 VAL A 38 ASN A 43 1 N ILE A 39 O LEU A 137 SHEET 7 B13 LEU A 150 LYS A 156 1 O LEU A 154 N GLY A 42 SHEET 8 B13 ALA A 182 THR A 186 1 O VAL A 184 N LEU A 155 SHEET 9 B13 THR A 201 LEU A 212 1 O PHE A 202 N LEU A 183 SHEET 10 B13 VAL A 291 LEU A 300 -1 O LYS A 297 N GLU A 207 SHEET 11 B13 ILE A 274 THR A 277 1 N TYR A 275 O PHE A 292 SHEET 12 B13 VAL A 229 SER A 233 1 N ILE A 230 O ILE A 274 SHEET 13 B13 VAL A 252 SER A 257 1 O GLU A 254 N ALA A 231 CISPEP 1 LEU A 165 PRO A 166 0 0.87 SITE 1 AC1 2 GLU A 189 ARG A 206 SITE 1 AC2 6 LYS A 30 ASP A 266 PHE A 267 THR A 268 SITE 2 AC2 6 HOH A 550 HOH A 551 SITE 1 AC3 5 GLY A 48 LYS A 156 LYS A 158 TYR A 187 SITE 2 AC3 5 GLU A 191 SITE 1 AC4 3 THR A 278 PRO A 279 HOH A 507 SITE 1 AC5 1 ASN A 295 SITE 1 AC6 2 ARG A 178 PHE A 216 SITE 1 AC7 2 LYS A 26 PHE A 28 SITE 1 AC8 6 GLY A 27 PHE A 28 SER A 265 ASP A 266 SITE 2 AC8 6 PHE A 267 THR A 268 CRYST1 101.191 101.191 131.904 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007581 0.00000