HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-APR-12 4EI0 TITLE CRYSTAL STRUCTURE OF A DUF4466 FAMILY PROTEIN (PARMER_03218) FROM TITLE 2 PARABACTEROIDES MERDAE ATCC 43184 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES MERDAE; SOURCE 3 ORGANISM_TAXID: 411477; SOURCE 4 STRAIN: ATCC 43184; SOURCE 5 GENE: PARMER_03218; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF14725 FAMILY PROTEIN, DUF4466, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4EI0 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4EI0 1 JRNL REVDAT 3 15-NOV-17 4EI0 1 REMARK REVDAT 2 24-DEC-14 4EI0 1 TITLE REVDAT 1 30-MAY-12 4EI0 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (PARMER_03218) JRNL TITL 2 FROM PARABACTEROIDES MERDAE ATCC 43184 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 47345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4795 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3142 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6521 ; 1.702 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7738 ; 1.185 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 6.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;39.406 ;25.437 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 804 ;13.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5398 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 934 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 171 REMARK 3 RESIDUE RANGE : A 172 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5300 44.7454 13.8564 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0331 REMARK 3 T33: 0.0386 T12: -0.0045 REMARK 3 T13: 0.0103 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4439 L22: 1.0994 REMARK 3 L33: 2.2565 L12: -0.2180 REMARK 3 L13: 0.3598 L23: -1.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.0055 S13: -0.0034 REMARK 3 S21: -0.1028 S22: 0.0834 S23: 0.0703 REMARK 3 S31: 0.0303 S32: -0.2345 S33: -0.1004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 171 REMARK 3 RESIDUE RANGE : B 172 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2096 43.6154 77.7522 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.0644 REMARK 3 T33: 0.1254 T12: 0.0092 REMARK 3 T13: -0.0357 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.7108 L22: 0.7156 REMARK 3 L33: 2.7459 L12: 0.2354 REMARK 3 L13: -0.7396 L23: -0.6815 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0395 S13: -0.0668 REMARK 3 S21: 0.0219 S22: 0.0225 S23: 0.0419 REMARK 3 S31: -0.0063 S32: -0.2738 S33: -0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.GLYCEROL (GOL) FROM THE CRYSTALLIZATION SOLUTION HAS BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 4EI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.469 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% GLYCEROL, 19.0% POLYETHYLENE REMARK 280 GLYCOL 4000, 19.0% 2-PROPANOL, 0.1M SODIUM CITRATE PH 5.6, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.34750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.93950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.34750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.37450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.93950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 CYS A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 LYS A 31 REMARK 465 ASP A 32 REMARK 465 GLY B 0 REMARK 465 CYS B 23 REMARK 465 ASP B 24 REMARK 465 ASP B 25 REMARK 465 ASP B 26 REMARK 465 PRO B 27 REMARK 465 VAL B 28 REMARK 465 LEU B 29 REMARK 465 LEU B 30 REMARK 465 LYS B 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 ASP B 32 CG OD1 OD2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 LYS B 287 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 311 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU B 192 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 311 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 184 69.46 -103.66 REMARK 500 SER A 227 -136.36 52.31 REMARK 500 LEU A 261 70.90 -119.97 REMARK 500 LYS A 287 54.02 -93.40 REMARK 500 GLU A 298 -8.54 81.25 REMARK 500 SER B 35 45.22 -85.02 REMARK 500 LYS B 184 72.70 -103.63 REMARK 500 SER B 227 -136.24 50.33 REMARK 500 LYS B 287 50.47 -91.57 REMARK 500 GLU B 298 -7.57 81.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 419245 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 23-333) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4EI0 A 23 333 UNP A7AIG2 A7AIG2_9PORP 23 333 DBREF 4EI0 B 23 333 UNP A7AIG2 A7AIG2_9PORP 23 333 SEQADV 4EI0 GLY A 0 UNP A7AIG2 EXPRESSION TAG SEQADV 4EI0 GLY B 0 UNP A7AIG2 EXPRESSION TAG SEQRES 1 A 312 GLY CYS ASP ASP ASP PRO VAL LEU LEU LYS ASP PRO VAL SEQRES 2 A 312 SER ALA LEU SER ASN ASP CYS ILE LYS ARG SER LEU PRO SEQRES 3 A 312 VAL ALA PRO ASN ILE VAL GLY ASN GLU ILE GLU PHE ALA SEQRES 4 A 312 TYR ALA MSE ALA ILE PRO ASN GLU LEU GLY LYS LEU SER SEQRES 5 A 312 SER ALA GLN VAL VAL SER SER ILE ALA GLY ALA THR GLY SEQRES 6 A 312 THR TYR PHE ASP PRO ASN SER TYR TYR THR ASN SER SER SEQRES 7 A 312 GLY GLN ASP ILE PRO VAL LYS VAL CYS SER ASP SER GLN SEQRES 8 A 312 THR ASN GLY THR THR THR VAL ILE ASP PHE THR VAL ASP SEQRES 9 A 312 THR CYS ALA ALA THR LEU ARG TYR TYR TYR ILE ILE PRO SEQRES 10 A 312 GLU GLU ALA ARG GLY LYS ASP VAL GLN PHE SER PHE SER SEQRES 11 A 312 VAL LYS ALA SER ASN GLY GLN VAL ALA GLU TYR LYS LEU SEQRES 12 A 312 GLY PRO TYR LYS ILE SER LYS MSE ASP MSE ALA LYS ASN SEQRES 13 A 312 LEU SER VAL THR ASN ASP LYS CYS TYR LEU SER PHE LEU SEQRES 14 A 312 ASN GLU GLY GLU ALA VAL HIS ILE TYR SER LYS ALA ASP SEQRES 15 A 312 LEU GLN ALA ASN PRO SER LEU ALA ALA LYS ILE ASP ILE SEQRES 16 A 312 MSE TYR ALA TYR SER GLU LYS SER ASP LEU SER HIS ALA SEQRES 17 A 312 PHE TYR THR SER SER SER PRO LYS GLU TYR MSE GLY GLY SEQRES 18 A 312 THR GLU LEU PRO SER GLY PHE VAL ASN ASN THR LYS MSE SEQRES 19 A 312 ILE LYS VAL TYR GLY LEU GLN ASP ARG GLN LEU SER ASP SEQRES 20 A 312 LEU GLN TYR SER LYS PHE ILE ASP ASP LEU ASP PHE GLU SEQRES 21 A 312 THR ILE ASP MSE SER LYS CYS THR ASN TYR ILE LEU GLY SEQRES 22 A 312 LEU LYS GLU GLU ALA GLY ALA TRP VAL GLU THR ALA ASP SEQRES 23 A 312 GLY LYS TYR ARG ALA TYR VAL TYR ILE ASN LYS ALA SER SEQRES 24 A 312 ALA SER GLU VAL THR VAL SER VAL LYS ARG TYR LYS MSE SEQRES 1 B 312 GLY CYS ASP ASP ASP PRO VAL LEU LEU LYS ASP PRO VAL SEQRES 2 B 312 SER ALA LEU SER ASN ASP CYS ILE LYS ARG SER LEU PRO SEQRES 3 B 312 VAL ALA PRO ASN ILE VAL GLY ASN GLU ILE GLU PHE ALA SEQRES 4 B 312 TYR ALA MSE ALA ILE PRO ASN GLU LEU GLY LYS LEU SER SEQRES 5 B 312 SER ALA GLN VAL VAL SER SER ILE ALA GLY ALA THR GLY SEQRES 6 B 312 THR TYR PHE ASP PRO ASN SER TYR TYR THR ASN SER SER SEQRES 7 B 312 GLY GLN ASP ILE PRO VAL LYS VAL CYS SER ASP SER GLN SEQRES 8 B 312 THR ASN GLY THR THR THR VAL ILE ASP PHE THR VAL ASP SEQRES 9 B 312 THR CYS ALA ALA THR LEU ARG TYR TYR TYR ILE ILE PRO SEQRES 10 B 312 GLU GLU ALA ARG GLY LYS ASP VAL GLN PHE SER PHE SER SEQRES 11 B 312 VAL LYS ALA SER ASN GLY GLN VAL ALA GLU TYR LYS LEU SEQRES 12 B 312 GLY PRO TYR LYS ILE SER LYS MSE ASP MSE ALA LYS ASN SEQRES 13 B 312 LEU SER VAL THR ASN ASP LYS CYS TYR LEU SER PHE LEU SEQRES 14 B 312 ASN GLU GLY GLU ALA VAL HIS ILE TYR SER LYS ALA ASP SEQRES 15 B 312 LEU GLN ALA ASN PRO SER LEU ALA ALA LYS ILE ASP ILE SEQRES 16 B 312 MSE TYR ALA TYR SER GLU LYS SER ASP LEU SER HIS ALA SEQRES 17 B 312 PHE TYR THR SER SER SER PRO LYS GLU TYR MSE GLY GLY SEQRES 18 B 312 THR GLU LEU PRO SER GLY PHE VAL ASN ASN THR LYS MSE SEQRES 19 B 312 ILE LYS VAL TYR GLY LEU GLN ASP ARG GLN LEU SER ASP SEQRES 20 B 312 LEU GLN TYR SER LYS PHE ILE ASP ASP LEU ASP PHE GLU SEQRES 21 B 312 THR ILE ASP MSE SER LYS CYS THR ASN TYR ILE LEU GLY SEQRES 22 B 312 LEU LYS GLU GLU ALA GLY ALA TRP VAL GLU THR ALA ASP SEQRES 23 B 312 GLY LYS TYR ARG ALA TYR VAL TYR ILE ASN LYS ALA SER SEQRES 24 B 312 ALA SER GLU VAL THR VAL SER VAL LYS ARG TYR LYS MSE MODRES 4EI0 MSE A 63 MET SELENOMETHIONINE MODRES 4EI0 MSE A 172 MET SELENOMETHIONINE MODRES 4EI0 MSE A 174 MET SELENOMETHIONINE MODRES 4EI0 MSE A 217 MET SELENOMETHIONINE MODRES 4EI0 MSE A 240 MET SELENOMETHIONINE MODRES 4EI0 MSE A 255 MET SELENOMETHIONINE MODRES 4EI0 MSE A 285 MET SELENOMETHIONINE MODRES 4EI0 MSE A 333 MET SELENOMETHIONINE MODRES 4EI0 MSE B 63 MET SELENOMETHIONINE MODRES 4EI0 MSE B 172 MET SELENOMETHIONINE MODRES 4EI0 MSE B 174 MET SELENOMETHIONINE MODRES 4EI0 MSE B 217 MET SELENOMETHIONINE MODRES 4EI0 MSE B 240 MET SELENOMETHIONINE MODRES 4EI0 MSE B 255 MET SELENOMETHIONINE MODRES 4EI0 MSE B 285 MET SELENOMETHIONINE MODRES 4EI0 MSE B 333 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 172 8 HET MSE A 174 8 HET MSE A 217 8 HET MSE A 240 8 HET MSE A 255 8 HET MSE A 285 8 HET MSE A 333 9 HET MSE B 63 8 HET MSE B 172 8 HET MSE B 174 8 HET MSE B 217 8 HET MSE B 240 8 HET MSE B 255 8 HET MSE B 285 8 HET MSE B 333 9 HET GOL A 400 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *355(H2 O) HELIX 1 1 PRO A 138 ARG A 142 5 5 HELIX 2 2 SER A 200 ASN A 207 1 8 HELIX 3 3 PRO A 208 ILE A 214 5 7 HELIX 4 4 PRO A 236 MSE A 240 5 5 HELIX 5 5 ASP A 263 ASP A 268 1 6 HELIX 6 6 ASP A 276 ILE A 283 1 8 HELIX 7 7 PRO B 138 ARG B 142 5 5 HELIX 8 8 SER B 200 ASN B 207 1 8 HELIX 9 9 PRO B 208 ILE B 214 5 7 HELIX 10 10 PRO B 236 MSE B 240 5 5 HELIX 11 11 ASP B 263 ASP B 268 1 6 HELIX 12 12 ASP B 276 ILE B 283 1 8 SHEET 1 A 4 SER A 38 LYS A 43 0 SHEET 2 A 4 GLU A 56 ALA A 64 -1 O ALA A 64 N SER A 38 SHEET 3 A 4 ALA A 128 ILE A 136 -1 O LEU A 131 N TYR A 61 SHEET 4 A 4 TYR A 88 PHE A 89 -1 N TYR A 88 O TYR A 134 SHEET 1 B 5 GLN A 112 ASN A 114 0 SHEET 2 B 5 THR A 117 ASP A 121 -1 O THR A 117 N ASN A 114 SHEET 3 B 5 LEU A 72 SER A 79 -1 N VAL A 77 O THR A 118 SHEET 4 B 5 ASP A 145 ALA A 154 -1 O LYS A 153 N SER A 73 SHEET 5 B 5 VAL A 159 LYS A 168 -1 O TYR A 162 N PHE A 150 SHEET 1 C 2 ASN A 92 THR A 96 0 SHEET 2 C 2 ASP A 102 LYS A 106 -1 O ILE A 103 N TYR A 95 SHEET 1 D 5 ASP A 173 VAL A 180 0 SHEET 2 D 5 VAL A 324 LYS A 332 -1 O VAL A 326 N LEU A 178 SHEET 3 D 5 TYR A 310 ALA A 319 -1 N ARG A 311 O TYR A 331 SHEET 4 D 5 GLY A 300 GLU A 304 -1 N VAL A 303 O ALA A 312 SHEET 5 D 5 LYS A 254 VAL A 258 -1 N VAL A 258 O GLY A 300 SHEET 1 E 5 HIS A 197 TYR A 199 0 SHEET 2 E 5 TYR A 186 SER A 188 -1 N TYR A 186 O TYR A 199 SHEET 3 E 5 ILE A 216 TYR A 220 -1 O ILE A 216 N LEU A 187 SHEET 4 E 5 HIS A 228 TYR A 231 -1 O TYR A 231 N MSE A 217 SHEET 5 E 5 TYR A 291 ILE A 292 -1 O ILE A 292 N PHE A 230 SHEET 1 F 4 SER B 38 LYS B 43 0 SHEET 2 F 4 GLU B 56 ALA B 64 -1 O ALA B 62 N ASP B 40 SHEET 3 F 4 ALA B 128 ILE B 136 -1 O LEU B 131 N TYR B 61 SHEET 4 F 4 TYR B 88 PHE B 89 -1 N TYR B 88 O TYR B 134 SHEET 1 G 5 GLN B 112 ASN B 114 0 SHEET 2 G 5 THR B 117 ASP B 121 -1 O THR B 117 N ASN B 114 SHEET 3 G 5 LEU B 72 SER B 79 -1 N VAL B 77 O THR B 118 SHEET 4 G 5 ASP B 145 ALA B 154 -1 O LYS B 153 N SER B 73 SHEET 5 G 5 VAL B 159 LYS B 168 -1 O TYR B 162 N PHE B 150 SHEET 1 H 2 ASN B 92 THR B 96 0 SHEET 2 H 2 ASP B 102 LYS B 106 -1 O ILE B 103 N TYR B 95 SHEET 1 I 5 ASP B 173 VAL B 180 0 SHEET 2 I 5 GLU B 323 LYS B 332 -1 O VAL B 326 N LEU B 178 SHEET 3 I 5 TYR B 310 SER B 320 -1 N ARG B 311 O TYR B 331 SHEET 4 I 5 ALA B 299 GLU B 304 -1 N VAL B 303 O ALA B 312 SHEET 5 I 5 LYS B 254 TYR B 259 -1 N LYS B 254 O GLU B 304 SHEET 1 J 5 HIS B 197 TYR B 199 0 SHEET 2 J 5 TYR B 186 SER B 188 -1 N TYR B 186 O TYR B 199 SHEET 3 J 5 ILE B 216 TYR B 220 -1 O ILE B 216 N LEU B 187 SHEET 4 J 5 HIS B 228 TYR B 231 -1 O TYR B 231 N MSE B 217 SHEET 5 J 5 TYR B 291 LEU B 295 -1 O LEU B 295 N HIS B 228 LINK C ALA A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N ALA A 64 1555 1555 1.32 LINK C LYS A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N ASP A 173 1555 1555 1.31 LINK C ASP A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ALA A 175 1555 1555 1.34 LINK C ILE A 216 N MSE A 217 1555 1555 1.32 LINK C MSE A 217 N TYR A 218 1555 1555 1.32 LINK C TYR A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N GLY A 241 1555 1555 1.32 LINK C LYS A 254 N MSE A 255 1555 1555 1.32 LINK C MSE A 255 N ILE A 256 1555 1555 1.33 LINK C ASP A 284 N MSE A 285 1555 1555 1.33 LINK C MSE A 285 N SER A 286 1555 1555 1.33 LINK C LYS A 332 N MSE A 333 1555 1555 1.33 LINK C ALA B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N ALA B 64 1555 1555 1.33 LINK C LYS B 171 N MSE B 172 1555 1555 1.32 LINK C MSE B 172 N ASP B 173 1555 1555 1.33 LINK C ASP B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N ALA B 175 1555 1555 1.33 LINK C ILE B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N TYR B 218 1555 1555 1.33 LINK C TYR B 239 N MSE B 240 1555 1555 1.34 LINK C MSE B 240 N GLY B 241 1555 1555 1.33 LINK C LYS B 254 N MSE B 255 1555 1555 1.32 LINK C MSE B 255 N ILE B 256 1555 1555 1.34 LINK C ASP B 284 N MSE B 285 1555 1555 1.33 LINK C MSE B 285 N SER B 286 1555 1555 1.34 LINK C LYS B 332 N MSE B 333 1555 1555 1.33 CISPEP 1 GLY A 165 PRO A 166 0 14.67 CISPEP 2 GLY B 165 PRO B 166 0 13.34 SITE 1 AC1 8 ILE A 52 VAL A 53 ASP A 173 MSE A 174 SITE 2 AC1 8 GLY A 193 HOH A 528 HOH A 570 HOH A 676 CRYST1 62.749 85.879 128.695 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007770 0.00000