data_4EIE # _entry.id 4EIE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.339 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4EIE RCSB RCSB071656 WWPDB D_1000071656 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3DR0 'The same protein at 1.23 A resolution' unspecified PDB 4EIC . unspecified PDB 4EID . unspecified PDB 4EIF . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4EIE _pdbx_database_status.recvd_initial_deposition_date 2012-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Krzywda, S.' 1 'Bialek, W.' 2 'Zatwarnicki, P.' 3 'Jaskolski, M.' 4 'Szczepaniak, A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Cytochrome c6 and c6C from Synechococcus sp. PCC 7002 - structure and function.' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Deeply branching c6-like cytochromes of cyanobacteria.' Biochemistry 47 5515 5522 2008 BICHAW US 0006-2960 0033 ? 18439023 10.1021/bi701973g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bialek, W.' 1 ? primary 'Krzywda, S.' 2 ? primary 'Zatwarnicki, P.' 3 ? primary 'Jaskolski, M.' 4 ? primary 'Szczepaniak, A.' 5 ? 1 'Bialek, W.' 6 ? 1 'Nelson, M.' 7 ? 1 'Tamiola, K.' 8 ? 1 'Kallas, T.' 9 ? 1 'Szczepaniak, A.' 10 ? # _cell.entry_id 4EIE _cell.length_a 56.130 _cell.length_b 56.130 _cell.length_c 49.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EIE _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytochrome c6' 9412.511 1 ? ? 'UNP Residues 29-115' ? 2 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 5 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative cytochrome c6-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQ SQTDWKS ; _entity_poly.pdbx_seq_one_letter_code_can ;ADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQ SQTDWKS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 LEU n 1 4 ASP n 1 5 GLN n 1 6 GLY n 1 7 ALA n 1 8 GLN n 1 9 ILE n 1 10 PHE n 1 11 GLU n 1 12 ALA n 1 13 HIS n 1 14 CYS n 1 15 ALA n 1 16 GLY n 1 17 CYS n 1 18 HIS n 1 19 LEU n 1 20 ASN n 1 21 GLY n 1 22 GLY n 1 23 ASN n 1 24 ILE n 1 25 VAL n 1 26 ARG n 1 27 ARG n 1 28 GLY n 1 29 LYS n 1 30 ASN n 1 31 LEU n 1 32 LYS n 1 33 LYS n 1 34 ARG n 1 35 ALA n 1 36 MET n 1 37 ALA n 1 38 LYS n 1 39 ASN n 1 40 GLY n 1 41 TYR n 1 42 THR n 1 43 SER n 1 44 VAL n 1 45 GLU n 1 46 ALA n 1 47 ILE n 1 48 ALA n 1 49 ASN n 1 50 LEU n 1 51 VAL n 1 52 THR n 1 53 GLN n 1 54 GLY n 1 55 LYS n 1 56 GLY n 1 57 ASN n 1 58 MET n 1 59 SER n 1 60 ALA n 1 61 TYR n 1 62 GLY n 1 63 ASP n 1 64 LYS n 1 65 LEU n 1 66 SER n 1 67 SER n 1 68 GLU n 1 69 GLU n 1 70 ILE n 1 71 GLN n 1 72 ALA n 1 73 VAL n 1 74 SER n 1 75 GLN n 1 76 TYR n 1 77 VAL n 1 78 LEU n 1 79 GLN n 1 80 GLN n 1 81 SER n 1 82 GLN n 1 83 THR n 1 84 ASP n 1 85 TRP n 1 86 LYS n 1 87 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'petJ, petJ2, SYNPCC7002_A2391' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 27264 / PCC 7002 / PR-6' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechococcus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 668369 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5a _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUCPF2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'co-expression with pEC86' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KX15_SYNP2 _struct_ref.pdbx_db_accession Q8KX15 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQ SQTDWKS ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4EIE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 87 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8KX15 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 115 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 87 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4EIE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.78 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein solution: 15 mg/ml cytochrome c6C in 0.1 M TRIS pH 7.5, 0.2 M NaCl and 1 mM PMSF; Precipitant solution: 2 M NaCl and 2 M (NH4)2SO4. pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR555 FLAT PANEL' _diffrn_detector.pdbx_collection_date 2010-07-13 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Ge _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8149 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8149 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4EIE _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 21.04 _reflns.d_resolution_high 1.03 _reflns.number_obs 39532 _reflns.number_all 39532 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 23.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.03 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.832 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 13.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4EIE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 38488 _refine.ls_number_reflns_all 38488 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.84 _refine.ls_d_res_high 1.03 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.13671 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13602 _refine.ls_R_factor_R_free 0.16344 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.6 _refine.ls_number_reflns_R_free 1017 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.B_iso_mean 9.113 _refine.aniso_B[1][1] -0.07 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[3][3] 0.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.023 _refine.pdbx_overall_ESU_R_Free 0.025 _refine.overall_SU_ML 0.014 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.602 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 621 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 798 _refine_hist.d_res_high 1.03 _refine_hist.d_res_low 19.84 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 709 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 458 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.898 2.104 ? 966 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.223 3.000 ? 1118 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.711 5.000 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.742 25.882 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.648 15.000 ? 119 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.953 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.139 0.200 ? 98 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 786 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 125 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.816 1.500 ? 410 'X-RAY DIFFRACTION' ? r_mcbond_other 0.617 1.500 ? 172 'X-RAY DIFFRACTION' ? r_mcangle_it 2.567 2.000 ? 655 'X-RAY DIFFRACTION' ? r_scbond_it 3.146 3.000 ? 299 'X-RAY DIFFRACTION' ? r_scangle_it 4.395 4.500 ? 310 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.373 3.000 ? 1167 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.030 _refine_ls_shell.d_res_low 1.057 _refine_ls_shell.number_reflns_R_work 2813 _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4EIE _struct.title 'Crystal structure of cytochrome c6C from Synechococcus sp. PCC 7002' _struct.pdbx_descriptor 'Cytochrome c6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EIE _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'cytochrome c6C, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? CYS A 14 ? ASP A 4 CYS A 14 1 ? 11 HELX_P HELX_P2 2 CYS A 14 ? LEU A 19 ? CYS A 14 LEU A 19 1 ? 6 HELX_P HELX_P3 3 ASN A 20 ? GLY A 22 ? ASN A 20 GLY A 22 5 ? 3 HELX_P HELX_P4 4 LYS A 32 ? GLY A 40 ? LYS A 32 GLY A 40 1 ? 9 HELX_P HELX_P5 5 SER A 43 ? GLY A 54 ? SER A 43 GLY A 54 1 ? 12 HELX_P HELX_P6 6 SER A 66 ? THR A 83 ? SER A 66 THR A 83 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 14 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 14 A HEC 101 1_555 ? ? ? ? ? ? ? 1.845 ? ? covale2 covale none ? A CYS 17 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 17 A HEC 101 1_555 ? ? ? ? ? ? ? 1.848 ? ? metalc1 metalc ? ? A GLN 8 OE1 ? ? ? 1_555 H NA . NA ? ? A GLN 8 A NA 107 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc2 metalc ? ? A GLU 11 OE1 ? ? ? 1_555 H NA . NA ? ? A GLU 11 A NA 107 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc3 metalc ? ? A HIS 18 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 18 A HEC 101 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc4 metalc ? ? A VAL 25 O ? ? ? 1_555 I NA . NA ? ? A VAL 25 A NA 108 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc5 metalc ? ? A MET 58 SD ? ? ? 1_555 B HEC . FE ? ? A MET 58 A HEC 101 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc6 metalc ? ? A ASP 63 O ? ? ? 1_555 J NA . NA ? ? A ASP 63 A NA 109 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc7 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 106 A HOH 297 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc8 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 106 A HOH 306 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc9 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 107 A HOH 226 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc10 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 108 A HOH 240 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc11 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 108 A HOH 290 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc12 metalc ? ? J NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 109 A HOH 236 1_555 ? ? ? ? ? ? ? 2.618 ? ? metalc13 metalc ? ? J NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 109 A HOH 241 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc14 metalc ? ? J NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 109 A HOH 281 1_555 ? ? ? ? ? ? ? 2.520 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEC 101 ? 22 'BINDING SITE FOR RESIDUE HEC A 101' AC2 Software A CL 102 ? 4 'BINDING SITE FOR RESIDUE CL A 102' AC3 Software A CL 103 ? 1 'BINDING SITE FOR RESIDUE CL A 103' AC4 Software A CL 104 ? 4 'BINDING SITE FOR RESIDUE CL A 104' AC5 Software A CL 105 ? 1 'BINDING SITE FOR RESIDUE CL A 105' AC6 Software A NA 106 ? 4 'BINDING SITE FOR RESIDUE NA A 106' AC7 Software A NA 107 ? 4 'BINDING SITE FOR RESIDUE NA A 107' AC8 Software A NA 108 ? 6 'BINDING SITE FOR RESIDUE NA A 108' AC9 Software A NA 109 ? 6 'BINDING SITE FOR RESIDUE NA A 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 HIS A 13 ? HIS A 13 . ? 1_555 ? 2 AC1 22 CYS A 14 ? CYS A 14 . ? 1_555 ? 3 AC1 22 CYS A 17 ? CYS A 17 . ? 1_555 ? 4 AC1 22 HIS A 18 ? HIS A 18 . ? 1_555 ? 5 AC1 22 ASN A 23 ? ASN A 23 . ? 1_555 ? 6 AC1 22 ARG A 26 ? ARG A 26 . ? 1_555 ? 7 AC1 22 LYS A 29 ? LYS A 29 . ? 1_555 ? 8 AC1 22 ASN A 30 ? ASN A 30 . ? 1_555 ? 9 AC1 22 LEU A 31 ? LEU A 31 . ? 1_555 ? 10 AC1 22 ALA A 35 ? ALA A 35 . ? 1_555 ? 11 AC1 22 ASN A 39 ? ASN A 39 . ? 1_555 ? 12 AC1 22 TYR A 41 ? TYR A 41 . ? 1_555 ? 13 AC1 22 LEU A 50 ? LEU A 50 . ? 1_555 ? 14 AC1 22 VAL A 51 ? VAL A 51 . ? 1_555 ? 15 AC1 22 LYS A 55 ? LYS A 55 . ? 1_555 ? 16 AC1 22 ASN A 57 ? ASN A 57 . ? 7_555 ? 17 AC1 22 MET A 58 ? MET A 58 . ? 1_555 ? 18 AC1 22 TYR A 61 ? TYR A 61 . ? 1_555 ? 19 AC1 22 HOH K . ? HOH A 207 . ? 1_555 ? 20 AC1 22 HOH K . ? HOH A 255 . ? 1_555 ? 21 AC1 22 HOH K . ? HOH A 303 . ? 1_555 ? 22 AC1 22 HOH K . ? HOH A 313 . ? 1_555 ? 23 AC2 4 ARG A 26 ? ARG A 26 . ? 1_555 ? 24 AC2 4 ASN A 57 ? ASN A 57 . ? 1_555 ? 25 AC2 4 HOH K . ? HOH A 207 . ? 1_555 ? 26 AC2 4 HOH K . ? HOH A 301 . ? 7_555 ? 27 AC3 1 ILE A 9 ? ILE A 9 . ? 1_555 ? 28 AC4 4 SER A 59 ? SER A 59 . ? 1_555 ? 29 AC4 4 SER A 59 ? SER A 59 . ? 7_555 ? 30 AC4 4 ALA A 60 ? ALA A 60 . ? 1_555 ? 31 AC4 4 ALA A 60 ? ALA A 60 . ? 7_555 ? 32 AC5 1 GLN A 5 ? GLN A 5 . ? 1_555 ? 33 AC6 4 HOH K . ? HOH A 229 . ? 7_555 ? 34 AC6 4 HOH K . ? HOH A 230 . ? 7_555 ? 35 AC6 4 HOH K . ? HOH A 297 . ? 1_555 ? 36 AC6 4 HOH K . ? HOH A 306 . ? 1_555 ? 37 AC7 4 GLN A 8 ? GLN A 8 . ? 1_555 ? 38 AC7 4 GLU A 11 ? GLU A 11 . ? 1_555 ? 39 AC7 4 HOH K . ? HOH A 226 . ? 1_555 ? 40 AC7 4 HOH K . ? HOH A 320 . ? 4_555 ? 41 AC8 6 VAL A 25 ? VAL A 25 . ? 1_555 ? 42 AC8 6 NA J . ? NA A 109 . ? 5_555 ? 43 AC8 6 HOH K . ? HOH A 212 . ? 7_555 ? 44 AC8 6 HOH K . ? HOH A 240 . ? 1_555 ? 45 AC8 6 HOH K . ? HOH A 241 . ? 5_555 ? 46 AC8 6 HOH K . ? HOH A 290 . ? 1_555 ? 47 AC9 6 ASP A 63 ? ASP A 63 . ? 1_555 ? 48 AC9 6 NA I . ? NA A 108 . ? 5_545 ? 49 AC9 6 HOH K . ? HOH A 212 . ? 3_545 ? 50 AC9 6 HOH K . ? HOH A 236 . ? 1_555 ? 51 AC9 6 HOH K . ? HOH A 241 . ? 1_555 ? 52 AC9 6 HOH K . ? HOH A 281 . ? 1_555 ? # _database_PDB_matrix.entry_id 4EIE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4EIE _atom_sites.fract_transf_matrix[1][1] 0.017816 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017816 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020145 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL FE H N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 LYS 86 86 ? ? ? A . n A 1 87 SER 87 87 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 101 91 HEC HEM A . C 3 CL 1 102 1 CL CL A . D 3 CL 1 103 2 CL CL A . E 3 CL 1 104 3 CL CL A . F 3 CL 1 105 4 CL CL A . G 4 NA 1 106 5 NA NA A . H 4 NA 1 107 6 NA NA A . I 4 NA 1 108 7 NA NA A . J 4 NA 1 109 8 NA NA A . K 5 HOH 1 201 9 HOH HOH A . K 5 HOH 2 202 10 HOH HOH A . K 5 HOH 3 203 11 HOH HOH A . K 5 HOH 4 204 12 HOH HOH A . K 5 HOH 5 205 13 HOH HOH A . K 5 HOH 6 206 14 HOH HOH A . K 5 HOH 7 207 15 HOH HOH A . K 5 HOH 8 208 16 HOH HOH A . K 5 HOH 9 209 17 HOH HOH A . K 5 HOH 10 210 18 HOH HOH A . K 5 HOH 11 211 19 HOH HOH A . K 5 HOH 12 212 20 HOH HOH A . K 5 HOH 13 213 21 HOH HOH A . K 5 HOH 14 214 22 HOH HOH A . K 5 HOH 15 215 23 HOH HOH A . K 5 HOH 16 216 24 HOH HOH A . K 5 HOH 17 217 25 HOH HOH A . K 5 HOH 18 218 26 HOH HOH A . K 5 HOH 19 219 27 HOH HOH A . K 5 HOH 20 220 28 HOH HOH A . K 5 HOH 21 221 29 HOH HOH A . K 5 HOH 22 222 30 HOH HOH A . K 5 HOH 23 223 31 HOH HOH A . K 5 HOH 24 224 32 HOH HOH A . K 5 HOH 25 225 33 HOH HOH A . K 5 HOH 26 226 34 HOH HOH A . K 5 HOH 27 227 35 HOH HOH A . K 5 HOH 28 228 36 HOH HOH A . K 5 HOH 29 229 37 HOH HOH A . K 5 HOH 30 230 38 HOH HOH A . K 5 HOH 31 231 39 HOH HOH A . K 5 HOH 32 232 40 HOH HOH A . K 5 HOH 33 233 41 HOH HOH A . K 5 HOH 34 234 42 HOH HOH A . K 5 HOH 35 235 43 HOH HOH A . K 5 HOH 36 236 44 HOH HOH A . K 5 HOH 37 237 45 HOH HOH A . K 5 HOH 38 238 46 HOH HOH A . K 5 HOH 39 239 47 HOH HOH A . K 5 HOH 40 240 48 HOH HOH A . K 5 HOH 41 241 49 HOH HOH A . K 5 HOH 42 242 50 HOH HOH A . K 5 HOH 43 243 51 HOH HOH A . K 5 HOH 44 244 52 HOH HOH A . K 5 HOH 45 245 53 HOH HOH A . K 5 HOH 46 246 54 HOH HOH A . K 5 HOH 47 247 55 HOH HOH A . K 5 HOH 48 248 56 HOH HOH A . K 5 HOH 49 249 57 HOH HOH A . K 5 HOH 50 250 58 HOH HOH A . K 5 HOH 51 251 59 HOH HOH A . K 5 HOH 52 252 60 HOH HOH A . K 5 HOH 53 253 61 HOH HOH A . K 5 HOH 54 254 62 HOH HOH A . K 5 HOH 55 255 63 HOH HOH A . K 5 HOH 56 256 64 HOH HOH A . K 5 HOH 57 257 65 HOH HOH A . K 5 HOH 58 258 66 HOH HOH A . K 5 HOH 59 259 67 HOH HOH A . K 5 HOH 60 260 68 HOH HOH A . K 5 HOH 61 261 69 HOH HOH A . K 5 HOH 62 262 70 HOH HOH A . K 5 HOH 63 263 71 HOH HOH A . K 5 HOH 64 264 72 HOH HOH A . K 5 HOH 65 265 73 HOH HOH A . K 5 HOH 66 266 74 HOH HOH A . K 5 HOH 67 267 75 HOH HOH A . K 5 HOH 68 268 76 HOH HOH A . K 5 HOH 69 269 77 HOH HOH A . K 5 HOH 70 270 78 HOH HOH A . K 5 HOH 71 271 79 HOH HOH A . K 5 HOH 72 272 80 HOH HOH A . K 5 HOH 73 273 81 HOH HOH A . K 5 HOH 74 274 82 HOH HOH A . K 5 HOH 75 275 83 HOH HOH A . K 5 HOH 76 276 84 HOH HOH A . K 5 HOH 77 277 85 HOH HOH A . K 5 HOH 78 278 86 HOH HOH A . K 5 HOH 79 279 87 HOH HOH A . K 5 HOH 80 280 88 HOH HOH A . K 5 HOH 81 281 89 HOH HOH A . K 5 HOH 82 282 90 HOH HOH A . K 5 HOH 83 283 91 HOH HOH A . K 5 HOH 84 284 92 HOH HOH A . K 5 HOH 85 285 93 HOH HOH A . K 5 HOH 86 286 94 HOH HOH A . K 5 HOH 87 287 95 HOH HOH A . K 5 HOH 88 288 96 HOH HOH A . K 5 HOH 89 289 97 HOH HOH A . K 5 HOH 90 290 98 HOH HOH A . K 5 HOH 91 291 99 HOH HOH A . K 5 HOH 92 292 100 HOH HOH A . K 5 HOH 93 293 101 HOH HOH A . K 5 HOH 94 294 102 HOH HOH A . K 5 HOH 95 295 103 HOH HOH A . K 5 HOH 96 296 104 HOH HOH A . K 5 HOH 97 297 105 HOH HOH A . K 5 HOH 98 298 106 HOH HOH A . K 5 HOH 99 299 107 HOH HOH A . K 5 HOH 100 300 108 HOH HOH A . K 5 HOH 101 301 109 HOH HOH A . K 5 HOH 102 302 110 HOH HOH A . K 5 HOH 103 303 111 HOH HOH A . K 5 HOH 104 304 112 HOH HOH A . K 5 HOH 105 305 113 HOH HOH A . K 5 HOH 106 306 114 HOH HOH A . K 5 HOH 107 307 115 HOH HOH A . K 5 HOH 108 308 116 HOH HOH A . K 5 HOH 109 309 117 HOH HOH A . K 5 HOH 110 310 118 HOH HOH A . K 5 HOH 111 311 119 HOH HOH A . K 5 HOH 112 312 121 HOH HOH A . K 5 HOH 113 313 122 HOH HOH A . K 5 HOH 114 314 123 HOH HOH A . K 5 HOH 115 315 124 HOH HOH A . K 5 HOH 116 316 125 HOH HOH A . K 5 HOH 117 317 126 HOH HOH A . K 5 HOH 118 318 127 HOH HOH A . K 5 HOH 119 319 128 HOH HOH A . K 5 HOH 120 320 129 HOH HOH A . K 5 HOH 121 321 130 HOH HOH A . K 5 HOH 122 322 131 HOH HOH A . K 5 HOH 123 323 132 HOH HOH A . K 5 HOH 124 324 133 HOH HOH A . K 5 HOH 125 325 134 HOH HOH A . K 5 HOH 126 326 135 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 104 ? E CL . 2 1 A HOH 235 ? K HOH . 3 1 A HOH 254 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLN 8 ? A GLN 8 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 88.6 ? 2 OE1 ? A GLN 8 ? A GLN 8 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O ? K HOH . ? A HOH 226 ? 1_555 83.0 ? 3 OE1 ? A GLU 11 ? A GLU 11 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O ? K HOH . ? A HOH 226 ? 1_555 97.5 ? 4 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NA ? B HEC . ? A HEC 101 ? 1_555 90.8 ? 5 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NB ? B HEC . ? A HEC 101 ? 1_555 89.8 ? 6 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NB ? B HEC . ? A HEC 101 ? 1_555 90.5 ? 7 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 87.3 ? 8 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 178.0 ? 9 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 NC ? B HEC . ? A HEC 101 ? 1_555 90.2 ? 10 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 91.5 ? 11 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 89.8 ? 12 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 178.7 ? 13 NC ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 ND ? B HEC . ? A HEC 101 ? 1_555 89.6 ? 14 NE2 ? A HIS 18 ? A HIS 18 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 176.2 ? 15 NA ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 86.0 ? 16 NB ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 92.2 ? 17 NC ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 95.9 ? 18 ND ? B HEC . ? A HEC 101 ? 1_555 FE ? B HEC . ? A HEC 101 ? 1_555 SD ? A MET 58 ? A MET 58 ? 1_555 86.5 ? 19 O ? A VAL 25 ? A VAL 25 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? K HOH . ? A HOH 240 ? 1_555 103.5 ? 20 O ? A VAL 25 ? A VAL 25 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 88.6 ? 21 O ? K HOH . ? A HOH 240 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? K HOH . ? A HOH 290 ? 1_555 76.9 ? 22 O ? A ASP 63 ? A ASP 63 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 236 ? 1_555 96.1 ? 23 O ? A ASP 63 ? A ASP 63 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 241 ? 1_555 81.3 ? 24 O ? K HOH . ? A HOH 236 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 241 ? 1_555 175.0 ? 25 O ? A ASP 63 ? A ASP 63 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 281 ? 1_555 89.7 ? 26 O ? K HOH . ? A HOH 236 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 281 ? 1_555 97.0 ? 27 O ? K HOH . ? A HOH 241 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 O ? K HOH . ? A HOH 281 ? 1_555 87.2 ? 28 O ? K HOH . ? A HOH 297 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? K HOH . ? A HOH 306 ? 1_555 100.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-10 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 2 0 2021-03-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_detector 2 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' atom_site 4 3 'Structure model' atom_site_anisotrop 5 3 'Structure model' chem_comp 6 3 'Structure model' diffrn_source 7 3 'Structure model' entity 8 3 'Structure model' pdbx_entity_nonpoly 9 3 'Structure model' pdbx_nonpoly_scheme 10 3 'Structure model' pdbx_struct_conn_angle 11 3 'Structure model' pdbx_struct_special_symmetry 12 3 'Structure model' struct_conn 13 3 'Structure model' struct_conn_type 14 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_detector.detector' 2 3 'Structure model' '_atom_site.B_iso_or_equiv' 3 3 'Structure model' '_atom_site.Cartn_x' 4 3 'Structure model' '_atom_site.Cartn_y' 5 3 'Structure model' '_atom_site.Cartn_z' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.label_atom_id' 9 3 'Structure model' '_atom_site.label_comp_id' 10 3 'Structure model' '_atom_site.occupancy' 11 3 'Structure model' '_atom_site.type_symbol' 12 3 'Structure model' '_atom_site_anisotrop.U[1][1]' 13 3 'Structure model' '_atom_site_anisotrop.U[1][2]' 14 3 'Structure model' '_atom_site_anisotrop.U[1][3]' 15 3 'Structure model' '_atom_site_anisotrop.U[2][2]' 16 3 'Structure model' '_atom_site_anisotrop.U[2][3]' 17 3 'Structure model' '_atom_site_anisotrop.U[3][3]' 18 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 19 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 20 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 21 3 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 22 3 'Structure model' '_atom_site_anisotrop.type_symbol' 23 3 'Structure model' '_chem_comp.formula' 24 3 'Structure model' '_chem_comp.formula_weight' 25 3 'Structure model' '_chem_comp.id' 26 3 'Structure model' '_chem_comp.name' 27 3 'Structure model' '_chem_comp.pdbx_synonyms' 28 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 29 3 'Structure model' '_entity.formula_weight' 30 3 'Structure model' '_entity.pdbx_description' 31 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 32 3 'Structure model' '_pdbx_entity_nonpoly.name' 33 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 34 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 35 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 36 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 37 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 38 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 39 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 40 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 41 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 42 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 43 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 44 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 45 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 46 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 47 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 48 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 49 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 50 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 51 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 52 3 'Structure model' '_pdbx_struct_conn_angle.value' 53 3 'Structure model' '_struct_conn.conn_type_id' 54 3 'Structure model' '_struct_conn.id' 55 3 'Structure model' '_struct_conn.pdbx_dist_value' 56 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 57 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 58 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 59 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 60 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 61 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 62 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 63 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 64 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 65 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 66 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 67 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 68 3 'Structure model' '_struct_conn_type.id' 69 3 'Structure model' '_struct_site.details' 70 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 71 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 72 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AUTOMAR 'data collection' . ? 1 Auto-Rickshaw phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HB3 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 288 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A LYS 86 ? A LYS 86 5 1 Y 1 A SER 87 ? A SER 87 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 'CHLORIDE ION' CL 4 'SODIUM ION' NA 5 water HOH #